EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000019613 (Gene tree)
Gene ID: 106947524
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 3812 bases
Position: chrKQ545561.1:201987-205798
Accession: 106947524
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000015645	RRM_1	PF00076.22	1.7e-32	1	2
ENSPLAP00000015645	RRM_1	PF00076.22	1.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000024361	-	753	XM_015032582	ENSPLAP00000015645	250 (aa)	XP_014888068	UPI00072DD232

Gene Model

Click here to download ENSPLAG00000019613's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000019613's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000019613	-	65	38.021	ENSPLAG00000005508	srsf5a	72	34.766
ENSPLAG00000019613	-	100	100.000	ENSPLAG00000019553	-	100	100.000
ENSPLAG00000019613	-	63	43.575	ENSPLAG00000006480	srsf5b	60	43.243
ENSPLAG00000019613	-	67	46.023	ENSPLAG00000008812	srsf4	61	40.223
ENSPLAG00000019613	-	64	45.062	ENSPLAG00000009243	srsf6a	78	38.462
ENSPLAG00000019613	-	68	66.272	ENSPLAG00000022740	srsf9	69	66.092
ENSPLAG00000019613	-	71	87.293	ENSPLAG00000008416	srsf1b	89	70.886

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000019613	-	72	87.978	ENSACIG00000002623	-	96	88.587	Amphilophus_citrinellus
ENSPLAG00000019613	-	71	84.043	ENSACLG00000021693	-	75	83.511	Astatotilapia_calliptera
ENSPLAG00000019613	-	73	98.901	ENSACLG00000005676	-	73	98.889	Astatotilapia_calliptera
ENSPLAG00000019613	-	68	61.202	WBGene00004700	rsp-3	71	60.870	Caenorhabditis_elegans
ENSPLAG00000019613	-	67	71.598	ENSCING00000007375	-	71	70.833	Ciona_intestinalis
ENSPLAG00000019613	-	67	72.781	ENSCSAVG00000006093	-	85	71.598	Ciona_savignyi
ENSPLAG00000019613	-	68	68.571	FBgn0283477	SF2	69	67.416	Drosophila_melanogaster
ENSPLAG00000019613	-	71	80.791	ENSEBUG00000009582	-	93	68.889	Eptatretus_burgeri
ENSPLAG00000019613	-	71	85.326	ENSFHEG00000017425	-	97	84.865	Fundulus_heteroclitus
ENSPLAG00000019613	-	73	95.652	ENSGMOG00000010606	-	98	95.652	Gadus_morhua
ENSPLAG00000019613	-	100	99.600	ENSGAFG00000012721	-	100	99.600	Gambusia_affinis
ENSPLAG00000019613	-	71	85.405	ENSGAFG00000000609	-	90	69.710	Gambusia_affinis
ENSPLAG00000019613	-	73	97.268	ENSGACG00000011094	-	98	97.268	Gasterosteus_aculeatus
ENSPLAG00000019613	-	71	84.492	ENSHBUG00000015576	-	75	84.492	Haplochromis_burtoni
ENSPLAG00000019613	-	71	82.873	ENSHCOG00000008016	-	72	81.768	Hippocampus_comes
ENSPLAG00000019613	-	71	88.889	ENSMFAG00000034223	-	78	71.193	Macaca_fascicularis
ENSPLAG00000019613	-	73	98.901	ENSMZEG00005007947	-	73	98.889	Maylandia_zebra
ENSPLAG00000019613	-	72	83.957	ENSMZEG00005019071	-	98	84.043	Maylandia_zebra
ENSPLAG00000019613	-	71	87.222	ENSMMOG00000018849	-	73	87.222	Mola_mola
ENSPLAG00000019613	-	73	98.901	ENSNBRG00000019981	-	73	98.889	Neolamprologus_brichardi
ENSPLAG00000019613	-	71	85.955	ENSNBRG00000008134	-	72	85.106	Neolamprologus_brichardi
ENSPLAG00000019613	-	65	68.712	ENSOPRG00000004745	-	96	67.485	Ochotona_princeps
ENSPLAG00000019613	-	71	83.598	ENSONIG00000004857	-	75	84.656	Oreochromis_niloticus
ENSPLAG00000019613	-	67	55.689	ENSOCUG00000026856	-	95	53.529	Oryctolagus_cuniculus
ENSPLAG00000019613	-	71	87.845	ENSORLG00000005314	-	73	88.462	Oryzias_latipes
ENSPLAG00000019613	-	71	87.845	ENSORLG00015015497	-	73	88.462	Oryzias_latipes_hsok
ENSPLAG00000019613	-	71	86.022	ENSOMEG00000017711	-	73	86.631	Oryzias_melastigma
ENSPLAG00000019613	-	71	86.339	ENSPREG00000016792	-	90	70.293	Poecilia_reticulata
ENSPLAG00000019613	-	71	84.043	ENSPNYG00000020651	-	72	84.574	Pundamilia_nyererei
ENSPLAG00000019613	-	73	98.901	ENSPNYG00000017115	-	73	98.889	Pundamilia_nyererei
ENSPLAG00000019613	-	71	92.179	ENSSFOG00015004989	-	66	90.556	Scleropages_formosus
ENSPLAG00000019613	-	71	84.615	ENSSDUG00000003887	-	74	84.615	Seriola_dumerili
ENSPLAG00000019613	-	72	85.475	ENSTRUG00000017058	-	74	87.151	Takifugu_rubripes
ENSPLAG00000019613	-	72	82.222	ENSTNIG00000009993	-	75	83.333	Tetraodon_nigroviridis
ENSPLAG00000019613	-	71	85.955	ENSXCOG00000017888	-	89	70.563	Xiphophorus_couchianus
ENSPLAG00000019613	-	100	99.600	ENSXCOG00000009643	-	100	99.600	Xiphophorus_couchianus
ENSPLAG00000019613	-	71	85.870	ENSXMAG00000010797	-	90	70.000	Xiphophorus_maculatus