EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000021055 (Gene tree)
Gene ID: 106960131
Gene Symbol: tnrc6c1
Alias: -
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 26483 bases
Position: chrKQ546474.1:24319-50801
Accession: 106960131
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000030147	Ago_hook	PF10427.9	3.6e-08	1	1
ENSPLAP00000016770	Ago_hook	PF10427.9	2.6e-07	1	1
ENSPLAP00000016770	RRM_1	PF00076.22	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000025780	-	4611	-	ENSPLAP00000030147	1536 (aa)	-	-
ENSPLAT00000025819	-	5516	XM_015053074	ENSPLAP00000016770	1600 (aa)	XP_014908560	-

Gene Model

Click here to download ENSPLAG00000021055's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000021055's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000021055	tnrc6c1	100	54.120	ENSPLAG00000006992	tnrc6c2	95	57.518
ENSPLAG00000021055	tnrc6c1	54	36.635	ENSPLAG00000001418	-	52	33.825

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000021055	tnrc6c1	100	49.777	ENSG00000078687	TNRC6C	100	52.586	Homo_sapiens
ENSPLAG00000021055	tnrc6c1	100	86.052	ENSAPOG00000019749	tnrc6c1	94	86.115	Acanthochromis_polyacanthus
ENSPLAG00000021055	tnrc6c1	97	49.280	ENSAMEG00000013756	TNRC6C	93	49.741	Ailuropoda_melanoleuca
ENSPLAG00000021055	tnrc6c1	100	74.330	ENSACIG00000008075	tnrc6c1	93	75.778	Amphilophus_citrinellus
ENSPLAG00000021055	tnrc6c1	100	86.123	ENSAOCG00000023968	tnrc6c1	94	86.185	Amphiprion_ocellaris
ENSPLAG00000021055	tnrc6c1	100	86.123	ENSAPEG00000009020	tnrc6c1	94	86.185	Amphiprion_percula
ENSPLAG00000021055	tnrc6c1	97	50.977	ENSAPLG00000005456	TNRC6C	88	50.489	Anas_platyrhynchos
ENSPLAG00000021055	tnrc6c1	97	51.453	ENSACAG00000016198	TNRC6C	83	51.403	Anolis_carolinensis
ENSPLAG00000021055	tnrc6c1	100	49.580	ENSANAG00000021554	TNRC6C	100	48.487	Aotus_nancymaae
ENSPLAG00000021055	tnrc6c1	100	72.561	ENSACLG00000000424	tnrc6c1	93	73.979	Astatotilapia_calliptera
ENSPLAG00000021055	tnrc6c1	94	59.487	ENSBTAG00000018658	TNRC6C	100	49.972	Bos_taurus
ENSPLAG00000021055	tnrc6c1	100	49.972	ENSCJAG00000019431	TNRC6C	100	48.487	Callithrix_jacchus
ENSPLAG00000021055	tnrc6c1	97	50.493	ENSCAFG00000005224	TNRC6C	89	49.782	Canis_familiaris
ENSPLAG00000021055	tnrc6c1	97	50.634	ENSCAFG00020006661	TNRC6C	97	49.390	Canis_lupus_dingo
ENSPLAG00000021055	tnrc6c1	93	60.041	ENSCHIG00000026004	TNRC6C	97	51.863	Capra_hircus
ENSPLAG00000021055	tnrc6c1	97	51.399	ENSTSYG00000005403	TNRC6C	100	50.450	Carlito_syrichta
ENSPLAG00000021055	tnrc6c1	100	46.633	ENSCAPG00000007307	TNRC6C	89	46.435	Cavia_aperea
ENSPLAG00000021055	tnrc6c1	100	49.612	ENSCPOG00000000467	TNRC6C	97	49.416	Cavia_porcellus
ENSPLAG00000021055	tnrc6c1	100	51.024	ENSCCAG00000030524	TNRC6C	100	49.748	Cebus_capucinus
ENSPLAG00000021055	tnrc6c1	100	49.916	ENSCATG00000033135	TNRC6C	100	50.000	Cercocebus_atys
ENSPLAG00000021055	tnrc6c1	100	50.278	ENSCLAG00000011139	TNRC6C	89	50.139	Chinchilla_lanigera
ENSPLAG00000021055	tnrc6c1	100	49.916	ENSCSAG00000005167	TNRC6C	89	50.000	Chlorocebus_sabaeus
ENSPLAG00000021055	tnrc6c1	67	67.227	ENSCHOG00000000088	TNRC6C	65	67.227	Choloepus_hoffmanni
ENSPLAG00000021055	tnrc6c1	97	52.784	ENSCPBG00000027960	TNRC6C	97	52.398	Chrysemys_picta_bellii
ENSPLAG00000021055	tnrc6c1	100	50.056	ENSCANG00000041771	TNRC6C	100	50.140	Colobus_angolensis_palliatus
ENSPLAG00000021055	tnrc6c1	97	49.743	ENSCGRG00001022686	Tnrc6c	100	48.392	Cricetulus_griseus_chok1gshd
ENSPLAG00000021055	tnrc6c1	97	50.057	ENSCGRG00000018041	Tnrc6c	100	48.392	Cricetulus_griseus_crigri
ENSPLAG00000021055	tnrc6c1	100	78.034	ENSCSEG00000012744	tnrc6c1	90	78.144	Cynoglossus_semilaevis
ENSPLAG00000021055	tnrc6c1	100	60.671	ENSDARG00000076847	tnrc6c1	99	60.098	Danio_rerio
ENSPLAG00000021055	tnrc6c1	97	51.095	ENSDNOG00000003247	TNRC6C	88	51.745	Dasypus_novemcinctus
ENSPLAG00000021055	tnrc6c1	97	47.814	ENSDORG00000004558	Tnrc6c	100	46.963	Dipodomys_ordii
ENSPLAG00000021055	tnrc6c1	90	55.004	ENSETEG00000005527	TNRC6C	78	57.584	Echinops_telfairi
ENSPLAG00000021055	tnrc6c1	97	49.685	ENSEASG00005004799	TNRC6C	100	49.333	Equus_asinus_asinus
ENSPLAG00000021055	tnrc6c1	97	50.175	ENSECAG00000012486	TNRC6C	90	49.774	Equus_caballus
ENSPLAG00000021055	tnrc6c1	96	53.927	ENSEEUG00000010008	TNRC6C	87	55.971	Erinaceus_europaeus
ENSPLAG00000021055	tnrc6c1	100	49.021	ENSFCAG00000028358	TNRC6C	100	48.394	Felis_catus
ENSPLAG00000021055	tnrc6c1	97	50.200	ENSFALG00000000848	TNRC6C	97	50.598	Ficedula_albicollis
ENSPLAG00000021055	tnrc6c1	100	50.000	ENSFDAG00000010368	TNRC6C	97	49.582	Fukomys_damarensis
ENSPLAG00000021055	tnrc6c1	100	93.071	ENSFHEG00000002936	tnrc6c1	94	90.970	Fundulus_heteroclitus
ENSPLAG00000021055	tnrc6c1	97	52.378	ENSGALG00000001725	TNRC6C	97	52.760	Gallus_gallus
ENSPLAG00000021055	tnrc6c1	100	97.812	ENSGAFG00000019019	tnrc6c1	100	97.812	Gambusia_affinis
ENSPLAG00000021055	tnrc6c1	100	73.422	ENSGACG00000012320	tnrc6c1	88	74.444	Gasterosteus_aculeatus
ENSPLAG00000021055	tnrc6c1	97	52.734	ENSGAGG00000022043	TNRC6C	92	52.384	Gopherus_agassizii
ENSPLAG00000021055	tnrc6c1	100	49.860	ENSGGOG00000011304	TNRC6C	100	49.579	Gorilla_gorilla
ENSPLAG00000021055	tnrc6c1	100	81.009	ENSHBUG00000010846	tnrc6c1	100	81.308	Haplochromis_burtoni
ENSPLAG00000021055	tnrc6c1	100	49.778	ENSHGLG00000004809	TNRC6C	89	49.026	Heterocephalus_glaber_female
ENSPLAG00000021055	tnrc6c1	100	49.310	ENSHGLG00100012597	TNRC6C	89	48.671	Heterocephalus_glaber_male
ENSPLAG00000021055	tnrc6c1	100	61.851	ENSIPUG00000000818	tnrc6c1	89	61.933	Ictalurus_punctatus
ENSPLAG00000021055	tnrc6c1	100	49.612	ENSSTOG00000009101	TNRC6C	97	49.333	Ictidomys_tridecemlineatus
ENSPLAG00000021055	tnrc6c1	97	49.971	ENSJJAG00000017055	Tnrc6c	86	49.686	Jaculus_jaculus
ENSPLAG00000021055	tnrc6c1	100	80.050	ENSKMAG00000021023	tnrc6c1	100	80.671	Kryptolebias_marmoratus
ENSPLAG00000021055	tnrc6c1	92	68.333	ENSLACG00000015283	TNRC6C	92	68.333	Latimeria_chalumnae
ENSPLAG00000021055	tnrc6c1	99	76.316	ENSLOCG00000013377	tnrc6c1	85	76.170	Lepisosteus_oculatus
ENSPLAG00000021055	tnrc6c1	97	50.409	ENSLAFG00000011122	TNRC6C	96	49.773	Loxodonta_africana
ENSPLAG00000021055	tnrc6c1	100	49.916	ENSMFAG00000043943	TNRC6C	100	50.000	Macaca_fascicularis
ENSPLAG00000021055	tnrc6c1	100	49.916	ENSMMUG00000011924	TNRC6C	100	48.789	Macaca_mulatta
ENSPLAG00000021055	tnrc6c1	100	49.692	ENSMNEG00000030405	TNRC6C	100	48.733	Macaca_nemestrina
ENSPLAG00000021055	tnrc6c1	100	49.916	ENSMLEG00000033436	TNRC6C	100	50.000	Mandrillus_leucophaeus
ENSPLAG00000021055	tnrc6c1	100	82.056	ENSMAMG00000023613	tnrc6c1	100	79.169	Mastacembelus_armatus
ENSPLAG00000021055	tnrc6c1	100	81.110	ENSMZEG00005010920	tnrc6c1	94	79.451	Maylandia_zebra
ENSPLAG00000021055	tnrc6c1	90	66.784	ENSMGAG00000003906	TNRC6C	80	65.018	Meleagris_gallopavo
ENSPLAG00000021055	tnrc6c1	97	49.858	ENSMAUG00000021618	Tnrc6c	97	49.829	Mesocricetus_auratus
ENSPLAG00000021055	tnrc6c1	100	49.944	ENSMICG00000003952	TNRC6C	100	50.392	Microcebus_murinus
ENSPLAG00000021055	tnrc6c1	97	49.971	ENSMOCG00000015879	Tnrc6c	94	50.544	Microtus_ochrogaster
ENSPLAG00000021055	tnrc6c1	100	79.679	ENSMMOG00000005203	tnrc6c1	100	79.432	Mola_mola
ENSPLAG00000021055	tnrc6c1	97	50.423	ENSMODG00000001785	TNRC6C	83	50.411	Monodelphis_domestica
ENSPLAG00000021055	tnrc6c1	97	49.971	MGP_CAROLIEiJ_G0017465	Tnrc6c	94	50.086	Mus_caroli
ENSPLAG00000021055	tnrc6c1	97	49.857	ENSMUSG00000025571	Tnrc6c	94	50.086	Mus_musculus
ENSPLAG00000021055	tnrc6c1	97	49.914	MGP_PahariEiJ_G0018593	Tnrc6c	94	50.371	Mus_pahari
ENSPLAG00000021055	tnrc6c1	97	49.686	MGP_SPRETEiJ_G0018309	Tnrc6c	94	49.914	Mus_spretus
ENSPLAG00000021055	tnrc6c1	100	49.633	ENSMPUG00000013348	TNRC6C	85	51.195	Mustela_putorius_furo
ENSPLAG00000021055	tnrc6c1	97	47.671	ENSMLUG00000014431	TNRC6C	85	48.108	Myotis_lucifugus
ENSPLAG00000021055	tnrc6c1	100	49.282	ENSNGAG00000012203	Tnrc6c	89	49.062	Nannospalax_galili
ENSPLAG00000021055	tnrc6c1	100	81.246	ENSNBRG00000005344	tnrc6c1	94	81.858	Neolamprologus_brichardi
ENSPLAG00000021055	tnrc6c1	100	48.615	ENSNLEG00000000047	TNRC6C	89	48.334	Nomascus_leucogenys
ENSPLAG00000021055	tnrc6c1	94	56.381	ENSMEUG00000005104	TNRC6C	92	68.159	Notamacropus_eugenii
ENSPLAG00000021055	tnrc6c1	100	50.028	ENSODEG00000012499	TNRC6C	100	49.528	Octodon_degus
ENSPLAG00000021055	tnrc6c1	100	82.346	ENSONIG00000002210	tnrc6c1	100	82.221	Oreochromis_niloticus
ENSPLAG00000021055	tnrc6c1	78	51.652	ENSOANG00000009758	-	57	56.726	Ornithorhynchus_anatinus
ENSPLAG00000021055	tnrc6c1	77	54.532	ENSOCUG00000006122	TNRC6C	83	41.942	Oryctolagus_cuniculus
ENSPLAG00000021055	tnrc6c1	100	79.317	ENSORLG00000009837	tnrc6c1	100	84.116	Oryzias_latipes
ENSPLAG00000021055	tnrc6c1	100	79.193	ENSORLG00020016510	tnrc6c1	100	79.503	Oryzias_latipes_hni
ENSPLAG00000021055	tnrc6c1	78	76.307	ENSORLG00015000171	tnrc6c1	98	76.783	Oryzias_latipes_hsok
ENSPLAG00000021055	tnrc6c1	100	80.982	ENSOMEG00000000357	tnrc6c1	94	81.044	Oryzias_melastigma
ENSPLAG00000021055	tnrc6c1	97	50.349	ENSOGAG00000007197	TNRC6C	97	50.494	Otolemur_garnettii
ENSPLAG00000021055	tnrc6c1	93	48.373	ENSOARG00000006041	TNRC6C	86	48.294	Ovis_aries
ENSPLAG00000021055	tnrc6c1	100	49.663	ENSPPAG00000027160	TNRC6C	100	49.636	Pan_paniscus
ENSPLAG00000021055	tnrc6c1	100	48.965	ENSPPRG00000018881	TNRC6C	100	48.505	Panthera_pardus
ENSPLAG00000021055	tnrc6c1	84	54.535	ENSPTIG00000008791	TNRC6C	72	54.417	Panthera_tigris_altaica
ENSPLAG00000021055	tnrc6c1	100	49.719	ENSPTRG00000009699	TNRC6C	100	49.692	Pan_troglodytes
ENSPLAG00000021055	tnrc6c1	100	49.748	ENSPANG00000019994	TNRC6C	100	48.879	Papio_anubis
ENSPLAG00000021055	tnrc6c1	100	54.766	ENSPKIG00000005428	tnrc6c1	100	56.028	Paramormyrops_kingsleyae
ENSPLAG00000021055	tnrc6c1	97	50.659	ENSPSIG00000018069	TNRC6C	91	50.265	Pelodiscus_sinensis
ENSPLAG00000021055	tnrc6c1	92	77.605	ENSPMGG00000022911	tnrc6c1	98	77.689	Periophthalmus_magnuspinnatus
ENSPLAG00000021055	tnrc6c1	100	49.531	ENSPEMG00000009785	Tnrc6c	100	47.622	Peromyscus_maniculatus_bairdii
ENSPLAG00000021055	tnrc6c1	54	39.264	ENSPCIG00000017421	-	99	39.802	Phascolarctos_cinereus
ENSPLAG00000021055	tnrc6c1	100	99.812	ENSPFOG00000012560	tnrc6c1	99	91.586	Poecilia_formosa
ENSPLAG00000021055	tnrc6c1	100	49.831	ENSPPYG00000008679	TNRC6C	88	49.748	Pongo_abelii
ENSPLAG00000021055	tnrc6c1	86	66.222	ENSPCAG00000012510	TNRC6C	84	66.222	Procavia_capensis
ENSPLAG00000021055	tnrc6c1	97	50.961	ENSPCOG00000021451	TNRC6C	100	50.309	Propithecus_coquereli
ENSPLAG00000021055	tnrc6c1	93	66.949	ENSPVAG00000002008	TNRC6C	93	66.949	Pteropus_vampyrus
ENSPLAG00000021055	tnrc6c1	100	81.044	ENSPNYG00000014477	tnrc6c1	100	81.779	Pundamilia_nyererei
ENSPLAG00000021055	tnrc6c1	97	49.544	ENSRNOG00000022395	Tnrc6c	97	50.143	Rattus_norvegicus
ENSPLAG00000021055	tnrc6c1	100	49.916	ENSRBIG00000027777	TNRC6C	100	50.000	Rhinopithecus_bieti
ENSPLAG00000021055	tnrc6c1	100	49.916	ENSRROG00000042912	TNRC6C	100	50.000	Rhinopithecus_roxellana
ENSPLAG00000021055	tnrc6c1	100	50.223	ENSSBOG00000023981	TNRC6C	100	49.860	Saimiri_boliviensis_boliviensis
ENSPLAG00000021055	tnrc6c1	57	64.034	ENSSHAG00000018330	-	100	63.762	Sarcophilus_harrisii
ENSPLAG00000021055	tnrc6c1	89	62.283	ENSSFOG00015004735	-	99	65.829	Scleropages_formosus
ENSPLAG00000021055	tnrc6c1	100	60.153	ENSSFOG00015006475	tnrc6c1	92	59.765	Scleropages_formosus
ENSPLAG00000021055	tnrc6c1	100	82.203	ENSSMAG00000012761	tnrc6c1	100	81.829	Scophthalmus_maximus
ENSPLAG00000021055	tnrc6c1	100	84.788	ENSSDUG00000002366	tnrc6c1	93	84.726	Seriola_dumerili
ENSPLAG00000021055	tnrc6c1	100	84.601	ENSSLDG00000025613	tnrc6c1	100	84.539	Seriola_lalandi_dorsalis
ENSPLAG00000021055	tnrc6c1	70	60.905	ENSSARG00000006816	TNRC6C	88	67.227	Sorex_araneus
ENSPLAG00000021055	tnrc6c1	85	54.391	ENSSPUG00000007341	TNRC6C	90	53.982	Sphenodon_punctatus
ENSPLAG00000021055	tnrc6c1	98	85.976	ENSSPAG00000014977	tnrc6c1	92	86.146	Stegastes_partitus
ENSPLAG00000021055	tnrc6c1	94	56.703	ENSSSCG00000034373	TNRC6C	97	49.087	Sus_scrofa
ENSPLAG00000021055	tnrc6c1	97	51.140	ENSTGUG00000007733	TNRC6C	94	50.657	Taeniopygia_guttata
ENSPLAG00000021055	tnrc6c1	100	76.012	ENSTRUG00000011685	tnrc6c1	100	71.858	Takifugu_rubripes
ENSPLAG00000021055	tnrc6c1	100	71.135	ENSTNIG00000005273	tnrc6c1	100	77.410	Tetraodon_nigroviridis
ENSPLAG00000021055	tnrc6c1	70	48.814	ENSTBEG00000005046	TNRC6C	100	49.545	Tupaia_belangeri
ENSPLAG00000021055	tnrc6c1	97	50.257	ENSTTRG00000010828	TNRC6C	94	50.859	Tursiops_truncatus
ENSPLAG00000021055	tnrc6c1	97	48.851	ENSUMAG00000013614	TNRC6C	87	50.000	Ursus_maritimus
ENSPLAG00000021055	tnrc6c1	58	49.314	ENSVPAG00000006765	-	95	52.988	Vicugna_pacos
ENSPLAG00000021055	tnrc6c1	97	51.300	ENSVVUG00000015268	TNRC6C	97	51.474	Vulpes_vulpes
ENSPLAG00000021055	tnrc6c1	97	49.398	ENSXETG00000019470	tnrc6c	97	48.653	Xenopus_tropicalis
ENSPLAG00000021055	tnrc6c1	100	97.750	ENSXMAG00000025971	tnrc6c1	100	97.750	Xiphophorus_maculatus