EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000021089 (Gene tree)
Gene ID: 106946746
Gene Symbol: lsm12b
Alias: -
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 8894 bases
Position: chrKQ545518.1:285293-294186
Accession: 106946746
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000016816	AD	PF09793.9	1.4e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000025884	-	1479	XM_015031342	ENSPLAP00000016816	196 (aa)	XP_014886828	UPI0004438162

Gene Model

Click here to download ENSPLAG00000021089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000021089's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000021089	lsm12b	100	83.163	ENSG00000161654	LSM12	100	83.163	Homo_sapiens
ENSPLAG00000021089	lsm12b	100	96.939	ENSAPOG00000007907	lsm12b	100	96.939	Acanthochromis_polyacanthus
ENSPLAG00000021089	lsm12b	100	81.407	ENSAMEG00000018321	LSM12	100	81.407	Ailuropoda_melanoleuca
ENSPLAG00000021089	lsm12b	100	94.898	ENSACIG00000008538	lsm12b	100	94.898	Amphilophus_citrinellus
ENSPLAG00000021089	lsm12b	100	96.939	ENSAOCG00000021847	lsm12b	88	96.939	Amphiprion_ocellaris
ENSPLAG00000021089	lsm12b	100	96.939	ENSAPEG00000002252	lsm12b	100	96.939	Amphiprion_percula
ENSPLAG00000021089	lsm12b	100	95.408	ENSATEG00000005705	lsm12b	100	95.408	Anabas_testudineus
ENSPLAG00000021089	lsm12b	100	82.143	ENSACAG00000004618	LSM12	100	82.143	Anolis_carolinensis
ENSPLAG00000021089	lsm12b	100	83.163	ENSANAG00000029011	LSM12	100	84.685	Aotus_nancymaae
ENSPLAG00000021089	lsm12b	100	95.408	ENSACLG00000026332	lsm12b	100	95.408	Astatotilapia_calliptera
ENSPLAG00000021089	lsm12b	100	84.694	ENSAMXG00000036117	lsm12a	91	84.694	Astyanax_mexicanus
ENSPLAG00000021089	lsm12b	100	92.857	ENSAMXG00000032952	lsm12b	100	92.857	Astyanax_mexicanus
ENSPLAG00000021089	lsm12b	100	83.163	ENSBTAG00000016252	LSM12	100	83.163	Bos_taurus
ENSPLAG00000021089	lsm12b	100	83.163	ENSCJAG00000048480	LSM12	100	84.685	Callithrix_jacchus
ENSPLAG00000021089	lsm12b	100	83.163	ENSCAFG00000014379	LSM12	92	83.163	Canis_familiaris
ENSPLAG00000021089	lsm12b	100	83.163	ENSCAFG00020012173	LSM12	100	83.163	Canis_lupus_dingo
ENSPLAG00000021089	lsm12b	100	83.163	ENSCHIG00000018175	LSM12	100	83.163	Capra_hircus
ENSPLAG00000021089	lsm12b	100	83.163	ENSTSYG00000036361	LSM12	100	83.163	Carlito_syrichta
ENSPLAG00000021089	lsm12b	83	79.012	ENSCAPG00000009647	LSM12	89	79.012	Cavia_aperea
ENSPLAG00000021089	lsm12b	100	82.143	ENSCPOG00000012860	LSM12	100	83.784	Cavia_porcellus
ENSPLAG00000021089	lsm12b	100	83.163	ENSCCAG00000032905	LSM12	100	84.685	Cebus_capucinus
ENSPLAG00000021089	lsm12b	100	83.163	ENSCATG00000030577	-	100	84.685	Cercocebus_atys
ENSPLAG00000021089	lsm12b	100	82.653	ENSCLAG00000015759	LSM12	100	83.784	Chinchilla_lanigera
ENSPLAG00000021089	lsm12b	100	83.673	ENSCSAG00000003486	LSM12	100	83.673	Chlorocebus_sabaeus
ENSPLAG00000021089	lsm12b	56	84.404	ENSCHOG00000001198	LSM12	100	84.404	Choloepus_hoffmanni
ENSPLAG00000021089	lsm12b	100	83.673	ENSCPBG00000027105	LSM12	100	83.673	Chrysemys_picta_bellii
ENSPLAG00000021089	lsm12b	100	83.163	ENSCANG00000043328	LSM12	100	84.685	Colobus_angolensis_palliatus
ENSPLAG00000021089	lsm12b	100	83.163	ENSCGRG00001002094	Lsm12	100	84.685	Cricetulus_griseus_chok1gshd
ENSPLAG00000021089	lsm12b	89	75.287	ENSCGRG00000004316	Lsm12	98	75.287	Cricetulus_griseus_crigri
ENSPLAG00000021089	lsm12b	100	95.408	ENSCSEG00000008434	lsm12b	100	95.408	Cynoglossus_semilaevis
ENSPLAG00000021089	lsm12b	100	98.469	ENSCVAG00000008755	lsm12b	100	98.469	Cyprinodon_variegatus
ENSPLAG00000021089	lsm12b	100	86.735	ENSDARG00000028848	lsm12a	100	86.735	Danio_rerio
ENSPLAG00000021089	lsm12b	100	92.857	ENSDARG00000109510	lsm12b	100	92.857	Danio_rerio
ENSPLAG00000021089	lsm12b	100	83.163	ENSDNOG00000002418	LSM12	91	83.163	Dasypus_novemcinctus
ENSPLAG00000021089	lsm12b	100	83.163	ENSDORG00000016381	Lsm12	100	84.685	Dipodomys_ordii
ENSPLAG00000021089	lsm12b	83	34.337	FBgn0030364	Lsm12	76	34.940	Drosophila_melanogaster
ENSPLAG00000021089	lsm12b	73	32.278	FBgn0036057	CG14164	83	32.278	Drosophila_melanogaster
ENSPLAG00000021089	lsm12b	88	75.723	ENSETEG00000011012	-	99	75.723	Echinops_telfairi
ENSPLAG00000021089	lsm12b	100	82.653	ENSETEG00000008374	LSM12	100	82.653	Echinops_telfairi
ENSPLAG00000021089	lsm12b	85	65.868	ENSEBUG00000016299	lsm12a	92	65.868	Eptatretus_burgeri
ENSPLAG00000021089	lsm12b	100	83.163	ENSEASG00005010155	LSM12	100	83.163	Equus_asinus_asinus
ENSPLAG00000021089	lsm12b	100	83.163	ENSECAG00000009071	LSM12	100	84.685	Equus_caballus
ENSPLAG00000021089	lsm12b	78	83.007	ENSEEUG00000002419	-	100	83.007	Erinaceus_europaeus
ENSPLAG00000021089	lsm12b	100	93.367	ENSELUG00000015538	lsm12b	100	88.776	Esox_lucius
ENSPLAG00000021089	lsm12b	100	91.837	ENSELUG00000000256	-	100	91.837	Esox_lucius
ENSPLAG00000021089	lsm12b	100	83.163	ENSFCAG00000037021	LSM12	100	83.163	Felis_catus
ENSPLAG00000021089	lsm12b	80	79.487	ENSFDAG00000008954	LSM12	91	79.487	Fukomys_damarensis
ENSPLAG00000021089	lsm12b	100	97.959	ENSFHEG00000019913	lsm12b	100	97.959	Fundulus_heteroclitus
ENSPLAG00000021089	lsm12b	81	95.570	ENSGMOG00000015449	lsm12b	100	95.570	Gadus_morhua
ENSPLAG00000021089	lsm12b	78	83.660	ENSGALG00000039803	LSM12	100	83.660	Gallus_gallus
ENSPLAG00000021089	lsm12b	100	98.980	ENSGAFG00000011829	lsm12b	100	98.980	Gambusia_affinis
ENSPLAG00000021089	lsm12b	81	96.203	ENSGACG00000003428	lsm12b	100	96.203	Gasterosteus_aculeatus
ENSPLAG00000021089	lsm12b	100	82.653	ENSGAGG00000021965	LSM12	100	82.653	Gopherus_agassizii
ENSPLAG00000021089	lsm12b	100	83.163	ENSGGOG00000010589	-	100	84.685	Gorilla_gorilla
ENSPLAG00000021089	lsm12b	85	94.611	ENSHBUG00000007667	lsm12b	74	94.611	Haplochromis_burtoni
ENSPLAG00000021089	lsm12b	100	83.163	ENSHGLG00000011411	LSM12	100	84.685	Heterocephalus_glaber_female
ENSPLAG00000021089	lsm12b	79	82.468	ENSHGLG00100000241	LSM12	82	82.468	Heterocephalus_glaber_male
ENSPLAG00000021089	lsm12b	100	94.898	ENSHCOG00000002094	lsm12b	100	94.898	Hippocampus_comes
ENSPLAG00000021089	lsm12b	99	82.990	ENSIPUG00000008936	lsm12a	99	82.990	Ictalurus_punctatus
ENSPLAG00000021089	lsm12b	100	91.837	ENSIPUG00000014800	lsm12	100	91.837	Ictalurus_punctatus
ENSPLAG00000021089	lsm12b	100	83.163	ENSSTOG00000007403	LSM12	100	84.685	Ictidomys_tridecemlineatus
ENSPLAG00000021089	lsm12b	100	82.143	ENSJJAG00000004364	-	100	83.784	Jaculus_jaculus
ENSPLAG00000021089	lsm12b	80	71.069	ENSJJAG00000014652	-	95	71.069	Jaculus_jaculus
ENSPLAG00000021089	lsm12b	96	74.737	ENSJJAG00000011793	-	100	74.737	Jaculus_jaculus
ENSPLAG00000021089	lsm12b	85	95.808	ENSKMAG00000007704	lsm12b	56	95.808	Kryptolebias_marmoratus
ENSPLAG00000021089	lsm12b	100	96.429	ENSLBEG00000027999	lsm12b	100	96.429	Labrus_bergylta
ENSPLAG00000021089	lsm12b	100	85.204	ENSLACG00000015981	LSM12	100	85.204	Latimeria_chalumnae
ENSPLAG00000021089	lsm12b	100	90.306	ENSLOCG00000013079	lsm12b	99	90.306	Lepisosteus_oculatus
ENSPLAG00000021089	lsm12b	100	83.163	ENSLAFG00000005202	LSM12	100	83.163	Loxodonta_africana
ENSPLAG00000021089	lsm12b	100	83.163	ENSMFAG00000031376	LSM12	100	84.685	Macaca_fascicularis
ENSPLAG00000021089	lsm12b	100	83.163	ENSMMUG00000006804	LSM12	100	84.685	Macaca_mulatta
ENSPLAG00000021089	lsm12b	65	72.414	ENSMMUG00000042106	-	100	72.414	Macaca_mulatta
ENSPLAG00000021089	lsm12b	100	83.163	ENSMNEG00000030594	-	100	84.685	Macaca_nemestrina
ENSPLAG00000021089	lsm12b	100	83.163	ENSMLEG00000039934	LSM12	100	84.685	Mandrillus_leucophaeus
ENSPLAG00000021089	lsm12b	100	96.939	ENSMAMG00000004279	lsm12b	100	96.939	Mastacembelus_armatus
ENSPLAG00000021089	lsm12b	100	95.408	ENSMZEG00005005754	lsm12b	100	95.408	Maylandia_zebra
ENSPLAG00000021089	lsm12b	100	83.673	ENSMICG00000037219	LSM12	100	85.586	Microcebus_murinus
ENSPLAG00000021089	lsm12b	100	71.939	ENSMOCG00000017015	-	86	71.939	Microtus_ochrogaster
ENSPLAG00000021089	lsm12b	100	83.163	ENSMOCG00000019878	-	100	84.685	Microtus_ochrogaster
ENSPLAG00000021089	lsm12b	100	96.429	ENSMMOG00000020848	lsm12b	100	96.429	Mola_mola
ENSPLAG00000021089	lsm12b	100	96.429	ENSMALG00000007578	lsm12b	100	96.429	Monopterus_albus
ENSPLAG00000021089	lsm12b	100	82.653	MGP_CAROLIEiJ_G0017241	Lsm12	100	83.784	Mus_caroli
ENSPLAG00000021089	lsm12b	100	83.163	ENSMUSG00000020922	Lsm12	100	84.685	Mus_musculus
ENSPLAG00000021089	lsm12b	100	76.526	MGP_PahariEiJ_G0018371	Lsm12	100	84.685	Mus_pahari
ENSPLAG00000021089	lsm12b	100	82.653	MGP_SPRETEiJ_G0018084	Lsm12	100	83.784	Mus_spretus
ENSPLAG00000021089	lsm12b	100	83.673	ENSMLUG00000006391	LSM12	100	83.673	Myotis_lucifugus
ENSPLAG00000021089	lsm12b	100	59.113	ENSNGAG00000015429	-	100	59.113	Nannospalax_galili
ENSPLAG00000021089	lsm12b	100	83.163	ENSNGAG00000001870	Lsm12	100	84.685	Nannospalax_galili
ENSPLAG00000021089	lsm12b	100	95.408	ENSNBRG00000006266	lsm12b	100	95.408	Neolamprologus_brichardi
ENSPLAG00000021089	lsm12b	100	83.163	ENSNLEG00000005580	-	100	84.685	Nomascus_leucogenys
ENSPLAG00000021089	lsm12b	85	82.530	ENSMEUG00000007501	-	100	82.530	Notamacropus_eugenii
ENSPLAG00000021089	lsm12b	100	83.163	ENSOPRG00000008552	LSM12	100	83.163	Ochotona_princeps
ENSPLAG00000021089	lsm12b	99	82.990	ENSODEG00000017998	-	99	82.990	Octodon_degus
ENSPLAG00000021089	lsm12b	100	75.510	ENSODEG00000007886	-	74	75.510	Octodon_degus
ENSPLAG00000021089	lsm12b	100	95.408	ENSONIG00000007933	lsm12b	100	95.408	Oreochromis_niloticus
ENSPLAG00000021089	lsm12b	99	77.436	ENSOCUG00000027889	-	100	77.436	Oryctolagus_cuniculus
ENSPLAG00000021089	lsm12b	99	76.923	ENSOCUG00000024823	-	100	76.923	Oryctolagus_cuniculus
ENSPLAG00000021089	lsm12b	99	77.949	ENSOCUG00000021254	-	100	77.949	Oryctolagus_cuniculus
ENSPLAG00000021089	lsm12b	100	81.407	ENSOCUG00000008566	-	100	81.407	Oryctolagus_cuniculus
ENSPLAG00000021089	lsm12b	100	95.408	ENSORLG00000011310	lsm12b	100	95.408	Oryzias_latipes
ENSPLAG00000021089	lsm12b	100	95.408	ENSORLG00020002060	lsm12b	92	95.408	Oryzias_latipes_hni
ENSPLAG00000021089	lsm12b	100	95.408	ENSORLG00015001647	lsm12b	92	95.408	Oryzias_latipes_hsok
ENSPLAG00000021089	lsm12b	100	95.918	ENSOMEG00000006184	lsm12b	92	95.918	Oryzias_melastigma
ENSPLAG00000021089	lsm12b	100	83.673	ENSOGAG00000010489	LSM12	100	83.673	Otolemur_garnettii
ENSPLAG00000021089	lsm12b	100	80.198	ENSOARG00000006589	LSM12	100	80.198	Ovis_aries
ENSPLAG00000021089	lsm12b	100	73.980	ENSPPAG00000034974	-	100	73.980	Pan_paniscus
ENSPLAG00000021089	lsm12b	100	83.163	ENSPPRG00000023420	LSM12	100	83.163	Panthera_pardus
ENSPLAG00000021089	lsm12b	78	83.007	ENSPTIG00000012704	-	82	83.007	Panthera_tigris_altaica
ENSPLAG00000021089	lsm12b	73	82.883	ENSPTIG00000014850	-	100	82.883	Panthera_tigris_altaica
ENSPLAG00000021089	lsm12b	100	83.163	ENSPTRG00000009261	LSM12	100	84.685	Pan_troglodytes
ENSPLAG00000021089	lsm12b	100	83.163	ENSPANG00000021315	-	100	84.685	Papio_anubis
ENSPLAG00000021089	lsm12b	100	92.857	ENSPKIG00000021058	lsm12b	100	92.857	Paramormyrops_kingsleyae
ENSPLAG00000021089	lsm12b	100	83.163	ENSPKIG00000017932	-	100	83.163	Paramormyrops_kingsleyae
ENSPLAG00000021089	lsm12b	100	95.408	ENSPMGG00000021344	lsm12b	100	95.408	Periophthalmus_magnuspinnatus
ENSPLAG00000021089	lsm12b	100	83.163	ENSPEMG00000012199	Lsm12	100	84.685	Peromyscus_maniculatus_bairdii
ENSPLAG00000021089	lsm12b	89	68.000	ENSPMAG00000005461	lsm12a	99	68.000	Petromyzon_marinus
ENSPLAG00000021089	lsm12b	100	83.163	ENSPCIG00000020244	LSM12	100	83.163	Phascolarctos_cinereus
ENSPLAG00000021089	lsm12b	100	100.000	ENSPFOG00000015930	lsm12b	100	100.000	Poecilia_formosa
ENSPLAG00000021089	lsm12b	100	100.000	ENSPMEG00000012961	lsm12b	100	100.000	Poecilia_mexicana
ENSPLAG00000021089	lsm12b	87	98.830	ENSPREG00000010236	lsm12b	95	98.830	Poecilia_reticulata
ENSPLAG00000021089	lsm12b	100	83.163	ENSPPYG00000008344	LSM12	100	83.163	Pongo_abelii
ENSPLAG00000021089	lsm12b	81	83.019	ENSPCAG00000008790	LSM12	100	83.019	Procavia_capensis
ENSPLAG00000021089	lsm12b	100	83.163	ENSPCOG00000027951	LSM12	100	84.685	Propithecus_coquereli
ENSPLAG00000021089	lsm12b	100	83.163	ENSPVAG00000013706	LSM12	100	83.163	Pteropus_vampyrus
ENSPLAG00000021089	lsm12b	100	95.408	ENSPNYG00000003386	lsm12b	100	95.408	Pundamilia_nyererei
ENSPLAG00000021089	lsm12b	100	92.347	ENSPNAG00000004186	lsm12b	100	92.347	Pygocentrus_nattereri
ENSPLAG00000021089	lsm12b	100	84.184	ENSPNAG00000018435	lsm12a	100	84.184	Pygocentrus_nattereri
ENSPLAG00000021089	lsm12b	100	83.163	ENSRNOG00000020894	Lsm12	100	83.163	Rattus_norvegicus
ENSPLAG00000021089	lsm12b	100	83.163	ENSRBIG00000027910	LSM12	100	84.685	Rhinopithecus_bieti
ENSPLAG00000021089	lsm12b	100	83.163	ENSRROG00000045530	-	100	84.685	Rhinopithecus_roxellana
ENSPLAG00000021089	lsm12b	99	51.546	ENSRROG00000000537	-	99	51.546	Rhinopithecus_roxellana
ENSPLAG00000021089	lsm12b	100	83.163	ENSSBOG00000025310	LSM12	100	84.685	Saimiri_boliviensis_boliviensis
ENSPLAG00000021089	lsm12b	81	81.646	ENSSHAG00000014914	LSM12	100	81.646	Sarcophilus_harrisii
ENSPLAG00000021089	lsm12b	100	92.347	ENSSFOG00015020392	lsm12a	100	92.347	Scleropages_formosus
ENSPLAG00000021089	lsm12b	100	92.347	ENSSFOG00015009612	lsm12	100	92.347	Scleropages_formosus
ENSPLAG00000021089	lsm12b	100	96.429	ENSSMAG00000008089	lsm12b	100	96.429	Scophthalmus_maximus
ENSPLAG00000021089	lsm12b	100	96.429	ENSSDUG00000012711	lsm12b	100	96.429	Seriola_dumerili
ENSPLAG00000021089	lsm12b	100	96.429	ENSSLDG00000007404	lsm12b	100	96.429	Seriola_lalandi_dorsalis
ENSPLAG00000021089	lsm12b	78	82.353	ENSSARG00000005537	LSM12	100	82.353	Sorex_araneus
ENSPLAG00000021089	lsm12b	100	83.673	ENSSPUG00000011984	LSM12	100	83.673	Sphenodon_punctatus
ENSPLAG00000021089	lsm12b	100	96.939	ENSSPAG00000017058	lsm12b	100	96.939	Stegastes_partitus
ENSPLAG00000021089	lsm12b	100	83.163	ENSSSCG00000032394	LSM12	100	83.163	Sus_scrofa
ENSPLAG00000021089	lsm12b	100	95.408	ENSTRUG00000007121	lsm12b	100	95.408	Takifugu_rubripes
ENSPLAG00000021089	lsm12b	100	94.898	ENSTNIG00000014436	lsm12b	100	94.898	Tetraodon_nigroviridis
ENSPLAG00000021089	lsm12b	100	80.612	ENSTBEG00000012392	-	100	80.612	Tupaia_belangeri
ENSPLAG00000021089	lsm12b	100	82.653	ENSTBEG00000012523	-	100	82.653	Tupaia_belangeri
ENSPLAG00000021089	lsm12b	100	83.163	ENSTTRG00000010433	LSM12	100	83.163	Tursiops_truncatus
ENSPLAG00000021089	lsm12b	100	83.163	ENSUAMG00000006313	LSM12	100	83.163	Ursus_americanus
ENSPLAG00000021089	lsm12b	81	80.380	ENSUMAG00000012987	LSM12	90	80.380	Ursus_maritimus
ENSPLAG00000021089	lsm12b	100	78.571	ENSVPAG00000011145	LSM12	100	78.571	Vicugna_pacos
ENSPLAG00000021089	lsm12b	100	83.163	ENSVVUG00000017581	LSM12	100	83.163	Vulpes_vulpes
ENSPLAG00000021089	lsm12b	82	60.000	ENSXETG00000003371	lsm12	77	60.000	Xenopus_tropicalis
ENSPLAG00000021089	lsm12b	100	98.980	ENSXCOG00000003994	lsm12b	100	98.980	Xiphophorus_couchianus
ENSPLAG00000021089	lsm12b	100	98.980	ENSXMAG00000020950	lsm12b	100	98.980	Xiphophorus_maculatus