EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000021300 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 3974 bases
Position: chrKQ547523.1:87513-91486
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000030309	CPSF73-100_C	PF11718.8	4.7e-55	1	1
ENSPLAP00000030309	Beta-Casp	PF10996.8	2.5e-19	1	1
ENSPLAP00000030309	RMMBL	PF07521.12	1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000031266	-	1218	-	ENSPLAP00000030309	405 (aa)	-	-

Gene Model

Click here to download ENSPLAG00000021300's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000021300's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000021300	-	100	79.506	ENSPLAG00000000882	cpsf3	58	79.506

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000021300	-	99	80.693	ENSG00000119203	CPSF3	62	80.693	Homo_sapiens
ENSPLAG00000021300	-	100	81.975	ENSAPOG00000022087	cpsf3	58	81.975	Acanthochromis_polyacanthus
ENSPLAG00000021300	-	99	81.436	ENSAMEG00000008493	CPSF3	59	81.436	Ailuropoda_melanoleuca
ENSPLAG00000021300	-	100	79.064	ENSACIG00000009846	cpsf3	63	79.064	Amphilophus_citrinellus
ENSPLAG00000021300	-	100	92.365	ENSACIG00000023663	CPSF3	64	92.365	Amphilophus_citrinellus
ENSPLAG00000021300	-	100	93.086	ENSAOCG00000010077	CPSF3	59	93.086	Amphiprion_ocellaris
ENSPLAG00000021300	-	100	81.728	ENSAOCG00000022056	cpsf3	58	81.728	Amphiprion_ocellaris
ENSPLAG00000021300	-	100	81.975	ENSAPEG00000019526	cpsf3	63	80.494	Amphiprion_percula
ENSPLAG00000021300	-	100	93.086	ENSAPEG00000021167	CPSF3	59	93.086	Amphiprion_percula
ENSPLAG00000021300	-	99	81.886	ENSATEG00000003959	cpsf3	63	80.397	Anabas_testudineus
ENSPLAG00000021300	-	100	80.494	ENSATEG00000014525	CPSF3	57	80.494	Anabas_testudineus
ENSPLAG00000021300	-	99	81.436	ENSAPLG00000006941	CPSF3	59	81.436	Anas_platyrhynchos
ENSPLAG00000021300	-	99	78.186	ENSACAG00000001759	CPSF3	64	78.186	Anolis_carolinensis
ENSPLAG00000021300	-	99	72.525	ENSANAG00000031254	CPSF3	59	72.525	Aotus_nancymaae
ENSPLAG00000021300	-	100	92.611	ENSACLG00000018846	CPSF3	64	92.611	Astatotilapia_calliptera
ENSPLAG00000021300	-	100	81.481	ENSACLG00000014484	cpsf3	63	80.741	Astatotilapia_calliptera
ENSPLAG00000021300	-	100	82.469	ENSAMXG00000004786	cpsf3	63	80.741	Astyanax_mexicanus
ENSPLAG00000021300	-	99	81.188	ENSBTAG00000019735	CPSF3	59	81.188	Bos_taurus
ENSPLAG00000021300	-	85	48.747	WBGene00013460	cpsf-3	50	48.747	Caenorhabditis_elegans
ENSPLAG00000021300	-	99	80.693	ENSCJAG00000006276	CPSF3	59	80.693	Callithrix_jacchus
ENSPLAG00000021300	-	99	81.436	ENSCAFG00000003375	CPSF3	56	81.436	Canis_familiaris
ENSPLAG00000021300	-	84	84.164	ENSCAFG00020026799	CPSF3	55	84.164	Canis_lupus_dingo
ENSPLAG00000021300	-	99	81.188	ENSCHIG00000013973	CPSF3	59	81.188	Capra_hircus
ENSPLAG00000021300	-	99	80.693	ENSTSYG00000002967	CPSF3	59	80.693	Carlito_syrichta
ENSPLAG00000021300	-	99	80.941	ENSCAPG00000013851	CPSF3	61	80.941	Cavia_aperea
ENSPLAG00000021300	-	99	80.941	ENSCPOG00000011299	CPSF3	59	80.941	Cavia_porcellus
ENSPLAG00000021300	-	99	80.446	ENSCCAG00000036730	CPSF3	60	80.446	Cebus_capucinus
ENSPLAG00000021300	-	99	77.723	ENSCATG00000014770	CPSF3	52	88.449	Cercocebus_atys
ENSPLAG00000021300	-	99	81.188	ENSCLAG00000002727	CPSF3	59	81.188	Chinchilla_lanigera
ENSPLAG00000021300	-	99	67.327	ENSCSAG00000007125	CPSF3	56	67.327	Chlorocebus_sabaeus
ENSPLAG00000021300	-	99	48.762	ENSCHOG00000000180	CPSF3	61	48.762	Choloepus_hoffmanni
ENSPLAG00000021300	-	99	81.436	ENSCPBG00000014074	CPSF3	58	81.436	Chrysemys_picta_bellii
ENSPLAG00000021300	-	99	59.314	ENSCING00000007214	-	58	59.314	Ciona_intestinalis
ENSPLAG00000021300	-	99	75.245	ENSCANG00000034435	CPSF3	61	75.245	Colobus_angolensis_palliatus
ENSPLAG00000021300	-	99	80.941	ENSCGRG00001013134	Cpsf3	59	80.941	Cricetulus_griseus_chok1gshd
ENSPLAG00000021300	-	99	80.941	ENSCGRG00000018319	Cpsf3	59	80.941	Cricetulus_griseus_crigri
ENSPLAG00000021300	-	100	88.177	ENSCSEG00000002021	CPSF3	63	88.177	Cynoglossus_semilaevis
ENSPLAG00000021300	-	79	74.295	ENSCVAG00000022039	-	94	74.295	Cyprinodon_variegatus
ENSPLAG00000021300	-	100	95.556	ENSCVAG00000015067	CPSF3	59	95.556	Cyprinodon_variegatus
ENSPLAG00000021300	-	100	83.457	ENSDARG00000027649	cpsf3	59	83.457	Danio_rerio
ENSPLAG00000021300	-	99	80.247	ENSDNOG00000008940	CPSF3	56	80.247	Dasypus_novemcinctus
ENSPLAG00000021300	-	92	82.038	ENSDORG00000014263	Cpsf3	57	82.038	Dipodomys_ordii
ENSPLAG00000021300	-	100	57.389	FBgn0261065	Cpsf73	58	57.389	Drosophila_melanogaster
ENSPLAG00000021300	-	92	82.842	ENSETEG00000003893	CPSF3	57	82.842	Echinops_telfairi
ENSPLAG00000021300	-	99	66.509	ENSEBUG00000009018	cpsf3	59	67.136	Eptatretus_burgeri
ENSPLAG00000021300	-	99	81.436	ENSEASG00005003970	CPSF3	59	81.436	Equus_asinus_asinus
ENSPLAG00000021300	-	99	81.436	ENSECAG00000019911	CPSF3	59	81.436	Equus_caballus
ENSPLAG00000021300	-	99	67.822	ENSEEUG00000015422	CPSF3	59	67.822	Erinaceus_europaeus
ENSPLAG00000021300	-	99	85.891	ENSELUG00000013775	cpsf3	63	85.149	Esox_lucius
ENSPLAG00000021300	-	99	81.188	ENSFCAG00000007852	CPSF3	62	81.188	Felis_catus
ENSPLAG00000021300	-	99	81.188	ENSFALG00000006572	CPSF3	62	81.188	Ficedula_albicollis
ENSPLAG00000021300	-	99	79.506	ENSFDAG00000006317	CPSF3	59	79.506	Fukomys_damarensis
ENSPLAG00000021300	-	100	80.244	ENSFHEG00000012186	CPSF3	100	80.244	Fundulus_heteroclitus
ENSPLAG00000021300	-	100	79.506	ENSFHEG00000014774	cpsf3	58	79.506	Fundulus_heteroclitus
ENSPLAG00000021300	-	100	82.469	ENSGMOG00000003157	cpsf3	59	82.469	Gadus_morhua
ENSPLAG00000021300	-	99	80.693	ENSGALG00000016424	CPSF3	64	80.693	Gallus_gallus
ENSPLAG00000021300	-	100	80.000	ENSGAFG00000019449	cpsf3	63	80.000	Gambusia_affinis
ENSPLAG00000021300	-	100	99.012	ENSGAFG00000008016	CPSF3	59	99.012	Gambusia_affinis
ENSPLAG00000021300	-	99	81.683	ENSGAGG00000025583	CPSF3	80	81.683	Gopherus_agassizii
ENSPLAG00000021300	-	99	80.693	ENSGGOG00000001757	CPSF3	64	80.693	Gorilla_gorilla
ENSPLAG00000021300	-	100	81.481	ENSHBUG00000001188	cpsf3	63	80.741	Haplochromis_burtoni
ENSPLAG00000021300	-	100	88.395	ENSHBUG00000014332	CPSF3	100	88.395	Haplochromis_burtoni
ENSPLAG00000021300	-	99	80.693	ENSHGLG00000000666	CPSF3	59	80.693	Heterocephalus_glaber_female
ENSPLAG00000021300	-	99	80.693	ENSHGLG00100007765	CPSF3	59	80.693	Heterocephalus_glaber_male
ENSPLAG00000021300	-	99	89.578	ENSHCOG00000015957	CPSF3	58	89.578	Hippocampus_comes
ENSPLAG00000021300	-	99	80.893	ENSHCOG00000007251	cpsf3	58	80.893	Hippocampus_comes
ENSPLAG00000021300	-	100	81.481	ENSIPUG00000023488	cpsf3	63	79.259	Ictalurus_punctatus
ENSPLAG00000021300	-	99	80.693	ENSSTOG00000004476	CPSF3	59	80.693	Ictidomys_tridecemlineatus
ENSPLAG00000021300	-	99	79.950	ENSJJAG00000023415	Cpsf3	59	79.950	Jaculus_jaculus
ENSPLAG00000021300	-	100	93.333	ENSKMAG00000007317	CPSF3	59	93.333	Kryptolebias_marmoratus
ENSPLAG00000021300	-	100	79.506	ENSKMAG00000002806	cpsf3	58	79.506	Kryptolebias_marmoratus
ENSPLAG00000021300	-	92	82.258	ENSLBEG00000015018	-	99	82.258	Labrus_bergylta
ENSPLAG00000021300	-	99	70.050	ENSLBEG00000020569	cpsf3	52	70.050	Labrus_bergylta
ENSPLAG00000021300	-	92	93.817	ENSLBEG00000013492	CPSF3	56	93.817	Labrus_bergylta
ENSPLAG00000021300	-	100	70.197	ENSLACG00000008308	CPSF3	59	70.197	Latimeria_chalumnae
ENSPLAG00000021300	-	100	83.824	ENSLOCG00000016823	cpsf3	59	83.824	Lepisosteus_oculatus
ENSPLAG00000021300	-	99	80.941	ENSLAFG00000009467	CPSF3	59	80.941	Loxodonta_africana
ENSPLAG00000021300	-	99	80.446	ENSMFAG00000001339	CPSF3	62	80.446	Macaca_fascicularis
ENSPLAG00000021300	-	99	80.446	ENSMMUG00000018038	CPSF3	62	80.446	Macaca_mulatta
ENSPLAG00000021300	-	91	78.919	ENSMNEG00000039447	CPSF3	59	78.919	Macaca_nemestrina
ENSPLAG00000021300	-	99	80.693	ENSMLEG00000026825	CPSF3	59	80.693	Mandrillus_leucophaeus
ENSPLAG00000021300	-	100	80.000	ENSMAMG00000003076	cpsf3	58	80.000	Mastacembelus_armatus
ENSPLAG00000021300	-	100	90.909	ENSMAMG00000008835	CPSF3	63	90.909	Mastacembelus_armatus
ENSPLAG00000021300	-	100	81.481	ENSMZEG00005014358	cpsf3	63	80.741	Maylandia_zebra
ENSPLAG00000021300	-	100	92.840	ENSMZEG00005006258	CPSF3	64	92.611	Maylandia_zebra
ENSPLAG00000021300	-	99	80.693	ENSMGAG00000013995	CPSF3	61	80.693	Meleagris_gallopavo
ENSPLAG00000021300	-	92	78.610	ENSMAUG00000000166	Cpsf3	99	78.610	Mesocricetus_auratus
ENSPLAG00000021300	-	99	76.427	ENSMICG00000002363	CPSF3	63	76.427	Microcebus_murinus
ENSPLAG00000021300	-	99	75.000	ENSMOCG00000020067	Cpsf3	57	75.000	Microtus_ochrogaster
ENSPLAG00000021300	-	100	50.728	ENSMMOG00000011923	CPSF3	63	50.122	Mola_mola
ENSPLAG00000021300	-	99	73.267	ENSMMOG00000018212	CPSF3	60	73.267	Mola_mola
ENSPLAG00000021300	-	99	79.075	ENSMODG00000014703	CPSF3	59	79.075	Monodelphis_domestica
ENSPLAG00000021300	-	99	87.901	ENSMALG00000011474	CPSF3	62	87.901	Monopterus_albus
ENSPLAG00000021300	-	100	82.222	ENSMALG00000016416	cpsf3	63	80.098	Monopterus_albus
ENSPLAG00000021300	-	99	81.436	MGP_CAROLIEiJ_G0017640	Cpsf3	59	81.436	Mus_caroli
ENSPLAG00000021300	-	99	81.436	ENSMUSG00000054309	Cpsf3	59	81.436	Mus_musculus
ENSPLAG00000021300	-	99	81.188	MGP_PahariEiJ_G0029397	Cpsf3	59	81.188	Mus_pahari
ENSPLAG00000021300	-	99	81.436	MGP_SPRETEiJ_G0018481	Cpsf3	59	81.436	Mus_spretus
ENSPLAG00000021300	-	99	81.481	ENSMPUG00000013213	CPSF3	59	81.481	Mustela_putorius_furo
ENSPLAG00000021300	-	99	80.988	ENSMLUG00000010636	CPSF3	59	80.988	Myotis_lucifugus
ENSPLAG00000021300	-	99	80.693	ENSNGAG00000019836	Cpsf3	59	80.693	Nannospalax_galili
ENSPLAG00000021300	-	100	92.611	ENSNBRG00000010525	CPSF3	64	92.611	Neolamprologus_brichardi
ENSPLAG00000021300	-	100	81.235	ENSNBRG00000004770	cpsf3	63	80.494	Neolamprologus_brichardi
ENSPLAG00000021300	-	99	80.446	ENSNLEG00000013359	CPSF3	62	80.446	Nomascus_leucogenys
ENSPLAG00000021300	-	91	60.270	ENSMEUG00000013117	-	54	60.270	Notamacropus_eugenii
ENSPLAG00000021300	-	91	79.515	ENSOPRG00000008902	CPSF3	54	79.515	Ochotona_princeps
ENSPLAG00000021300	-	99	80.941	ENSODEG00000003129	CPSF3	59	80.941	Octodon_degus
ENSPLAG00000021300	-	100	82.222	ENSONIG00000018812	cpsf3	58	82.222	Oreochromis_niloticus
ENSPLAG00000021300	-	99	81.436	ENSOANG00000008577	CPSF3	72	81.436	Ornithorhynchus_anatinus
ENSPLAG00000021300	-	99	80.941	ENSOCUG00000003728	CPSF3	59	80.941	Oryctolagus_cuniculus
ENSPLAG00000021300	-	100	80.494	ENSORLG00000018854	cpsf3	58	80.494	Oryzias_latipes
ENSPLAG00000021300	-	100	80.247	ENSORLG00020013331	cpsf3	63	77.778	Oryzias_latipes_hni
ENSPLAG00000021300	-	100	80.494	ENSORLG00015011017	cpsf3	63	78.025	Oryzias_latipes_hsok
ENSPLAG00000021300	-	100	80.988	ENSOMEG00000010647	cpsf3	56	80.988	Oryzias_melastigma
ENSPLAG00000021300	-	99	70.792	ENSOGAG00000001680	CPSF3	59	70.792	Otolemur_garnettii
ENSPLAG00000021300	-	99	81.188	ENSOARG00000015073	CPSF3	59	81.188	Ovis_aries
ENSPLAG00000021300	-	99	80.693	ENSPPAG00000042457	CPSF3	59	80.693	Pan_paniscus
ENSPLAG00000021300	-	99	81.188	ENSPPRG00000016790	CPSF3	62	81.188	Panthera_pardus
ENSPLAG00000021300	-	99	81.188	ENSPTIG00000003920	CPSF3	64	81.188	Panthera_tigris_altaica
ENSPLAG00000021300	-	99	80.693	ENSPTRG00000011638	CPSF3	59	80.693	Pan_troglodytes
ENSPLAG00000021300	-	99	80.446	ENSPANG00000016798	CPSF3	59	80.446	Papio_anubis
ENSPLAG00000021300	-	100	85.926	ENSPKIG00000023646	cpsf3	64	85.432	Paramormyrops_kingsleyae
ENSPLAG00000021300	-	99	81.436	ENSPSIG00000016144	CPSF3	59	81.436	Pelodiscus_sinensis
ENSPLAG00000021300	-	100	88.642	ENSPMGG00000015311	CPSF3	100	88.642	Periophthalmus_magnuspinnatus
ENSPLAG00000021300	-	85	83.673	ENSPMGG00000006141	-	59	83.673	Periophthalmus_magnuspinnatus
ENSPLAG00000021300	-	99	81.683	ENSPEMG00000017668	Cpsf3	59	81.683	Peromyscus_maniculatus_bairdii
ENSPLAG00000021300	-	99	81.188	ENSPCIG00000009823	CPSF3	60	81.188	Phascolarctos_cinereus
ENSPLAG00000021300	-	100	100.000	ENSPFOG00000010418	-	59	100.000	Poecilia_formosa
ENSPLAG00000021300	-	100	79.506	ENSPFOG00000015922	cpsf3	58	79.506	Poecilia_formosa
ENSPLAG00000021300	-	100	79.753	ENSPMEG00000018309	cpsf3	58	79.753	Poecilia_mexicana
ENSPLAG00000021300	-	55	99.554	ENSPMEG00000021555	CPSF3	88	99.554	Poecilia_mexicana
ENSPLAG00000021300	-	100	84.198	ENSPREG00000004482	CPSF3	56	84.198	Poecilia_reticulata
ENSPLAG00000021300	-	100	79.753	ENSPREG00000014875	cpsf3	63	79.753	Poecilia_reticulata
ENSPLAG00000021300	-	99	80.446	ENSPPYG00000012666	CPSF3	62	80.446	Pongo_abelii
ENSPLAG00000021300	-	99	80.988	ENSPVAG00000005324	CPSF3	59	80.988	Pteropus_vampyrus
ENSPLAG00000021300	-	100	81.481	ENSPNYG00000004405	cpsf3	63	80.741	Pundamilia_nyererei
ENSPLAG00000021300	-	78	95.899	ENSPNYG00000021047	CPSF3	53	95.899	Pundamilia_nyererei
ENSPLAG00000021300	-	100	82.222	ENSPNAG00000023060	cpsf3	64	82.222	Pygocentrus_nattereri
ENSPLAG00000021300	-	100	81.034	ENSRNOG00000052418	Cpsf3	59	81.034	Rattus_norvegicus
ENSPLAG00000021300	-	99	75.248	ENSRBIG00000041615	CPSF3	61	75.248	Rhinopithecus_bieti
ENSPLAG00000021300	-	99	80.693	ENSRROG00000033792	CPSF3	59	80.693	Rhinopithecus_roxellana
ENSPLAG00000021300	-	79	35.401	YLR277C	YSH1	50	35.401	Saccharomyces_cerevisiae
ENSPLAG00000021300	-	99	75.000	ENSSBOG00000027263	CPSF3	59	75.000	Saimiri_boliviensis_boliviensis
ENSPLAG00000021300	-	99	80.941	ENSSHAG00000007024	CPSF3	59	80.941	Sarcophilus_harrisii
ENSPLAG00000021300	-	100	85.432	ENSSFOG00015002108	cpsf3	64	85.432	Scleropages_formosus
ENSPLAG00000021300	-	92	89.785	ENSSMAG00000020534	CPSF3	54	89.785	Scophthalmus_maximus
ENSPLAG00000021300	-	100	82.222	ENSSDUG00000002828	cpsf3	57	82.222	Seriola_dumerili
ENSPLAG00000021300	-	100	92.593	ENSSDUG00000018498	CPSF3	64	91.358	Seriola_dumerili
ENSPLAG00000021300	-	100	92.593	ENSSLDG00000005234	CPSF3	63	90.617	Seriola_lalandi_dorsalis
ENSPLAG00000021300	-	100	82.469	ENSSLDG00000008469	cpsf3	57	82.469	Seriola_lalandi_dorsalis
ENSPLAG00000021300	-	99	80.198	ENSSPUG00000015525	CPSF3	59	80.198	Sphenodon_punctatus
ENSPLAG00000021300	-	100	92.840	ENSSPAG00000002906	CPSF3	63	90.864	Stegastes_partitus
ENSPLAG00000021300	-	100	83.210	ENSSPAG00000018579	cpsf3	58	83.210	Stegastes_partitus
ENSPLAG00000021300	-	99	81.436	ENSSSCG00000020799	CPSF3	64	81.436	Sus_scrofa
ENSPLAG00000021300	-	99	80.941	ENSTGUG00000013016	CPSF3	59	80.941	Taeniopygia_guttata
ENSPLAG00000021300	-	99	79.950	ENSTRUG00000007030	cpsf3	97	78.713	Takifugu_rubripes
ENSPLAG00000021300	-	100	77.833	ENSTRUG00000013905	CPSF3	100	77.833	Takifugu_rubripes
ENSPLAG00000021300	-	99	77.970	ENSUAMG00000007535	CPSF3	58	77.970	Ursus_americanus
ENSPLAG00000021300	-	99	81.436	ENSUMAG00000003676	CPSF3	62	81.436	Ursus_maritimus
ENSPLAG00000021300	-	92	80.429	ENSVPAG00000008041	CPSF3	59	80.429	Vicugna_pacos
ENSPLAG00000021300	-	99	81.436	ENSVVUG00000002194	CPSF3	59	81.436	Vulpes_vulpes
ENSPLAG00000021300	-	99	78.519	ENSXETG00000008263	cpsf3	59	78.519	Xenopus_tropicalis
ENSPLAG00000021300	-	92	98.118	ENSXCOG00000000957	-	87	98.118	Xiphophorus_couchianus
ENSPLAG00000021300	-	100	80.000	ENSXCOG00000019695	cpsf3	58	80.000	Xiphophorus_couchianus
ENSPLAG00000021300	-	100	98.765	ENSXMAG00000027291	CPSF3	59	98.765	Xiphophorus_maculatus
ENSPLAG00000021300	-	100	79.753	ENSXMAG00000009784	cpsf3	62	79.753	Xiphophorus_maculatus