EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000021653 (Gene tree)
Gene ID: 106962108
Gene Symbol: xrn1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 18729 bases
Position: chrKQ546687.1:129318-148046
Accession: 106962108
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000030520	XRN_N	PF03159.18	5.8e-97	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000031394	-	4873	XM_015056290	ENSPLAP00000030520	1551 (aa)	XP_014911776	UPI00072DB59D

Gene Model

Click here to download ENSPLAG00000021653's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000021653's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000021653	xrn1	99	64.013	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSPLAG00000021653	xrn1	98	81.706	ENSAPOG00000000622	xrn1	94	86.892	Acanthochromis_polyacanthus
ENSPLAG00000021653	xrn1	99	62.942	ENSAMEG00000012538	XRN1	91	62.407	Ailuropoda_melanoleuca
ENSPLAG00000021653	xrn1	99	83.149	ENSACIG00000001057	xrn1	89	88.770	Amphilophus_citrinellus
ENSPLAG00000021653	xrn1	99	83.667	ENSAOCG00000014097	xrn1	91	83.473	Amphiprion_ocellaris
ENSPLAG00000021653	xrn1	99	85.185	ENSAPEG00000006620	xrn1	95	84.990	Amphiprion_percula
ENSPLAG00000021653	xrn1	97	83.661	ENSATEG00000009752	xrn1	91	83.661	Anabas_testudineus
ENSPLAG00000021653	xrn1	97	63.277	ENSAPLG00000004905	XRN1	91	62.923	Anas_platyrhynchos
ENSPLAG00000021653	xrn1	99	62.738	ENSACAG00000004985	XRN1	91	62.508	Anolis_carolinensis
ENSPLAG00000021653	xrn1	99	64.331	ENSANAG00000029013	XRN1	99	73.175	Aotus_nancymaae
ENSPLAG00000021653	xrn1	99	84.935	ENSACLG00000004806	xrn1	90	84.805	Astatotilapia_calliptera
ENSPLAG00000021653	xrn1	99	70.860	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSPLAG00000021653	xrn1	99	64.150	ENSBTAG00000011524	XRN1	90	63.487	Bos_taurus
ENSPLAG00000021653	xrn1	77	37.586	WBGene00012730	xrn-1	76	63.003	Caenorhabditis_elegans
ENSPLAG00000021653	xrn1	99	64.132	ENSCJAG00000001872	XRN1	94	63.338	Callithrix_jacchus
ENSPLAG00000021653	xrn1	99	64.654	ENSCAFG00000007783	XRN1	90	64.277	Canis_familiaris
ENSPLAG00000021653	xrn1	99	63.631	ENSCAFG00020009120	XRN1	99	76.220	Canis_lupus_dingo
ENSPLAG00000021653	xrn1	99	63.178	ENSCHIG00000019192	XRN1	91	62.766	Capra_hircus
ENSPLAG00000021653	xrn1	99	64.018	ENSTSYG00000002705	XRN1	91	63.567	Carlito_syrichta
ENSPLAG00000021653	xrn1	54	86.047	ENSCAPG00000004604	-	94	86.047	Cavia_aperea
ENSPLAG00000021653	xrn1	99	64.277	ENSCCAG00000034800	XRN1	99	77.848	Cebus_capucinus
ENSPLAG00000021653	xrn1	99	64.295	ENSCATG00000041794	XRN1	91	63.458	Cercocebus_atys
ENSPLAG00000021653	xrn1	97	64.340	ENSCLAG00000001451	XRN1	99	78.730	Chinchilla_lanigera
ENSPLAG00000021653	xrn1	99	64.295	ENSCSAG00000011265	XRN1	90	63.458	Chlorocebus_sabaeus
ENSPLAG00000021653	xrn1	76	50.151	ENSCSAVG00000008584	-	93	50.151	Ciona_savignyi
ENSPLAG00000021653	xrn1	99	64.358	ENSCANG00000037495	XRN1	99	77.848	Colobus_angolensis_palliatus
ENSPLAG00000021653	xrn1	99	62.841	ENSCGRG00001019411	Xrn1	99	78.095	Cricetulus_griseus_chok1gshd
ENSPLAG00000021653	xrn1	99	62.841	ENSCGRG00000012464	Xrn1	99	78.095	Cricetulus_griseus_crigri
ENSPLAG00000021653	xrn1	99	72.902	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSPLAG00000021653	xrn1	73	86.649	ENSCVAG00000013089	xrn1	99	90.009	Cyprinodon_variegatus
ENSPLAG00000021653	xrn1	99	73.325	ENSDARG00000091652	xrn1	98	81.818	Danio_rerio
ENSPLAG00000021653	xrn1	99	64.043	ENSDORG00000013833	Xrn1	91	63.545	Dipodomys_ordii
ENSPLAG00000021653	xrn1	75	41.345	FBgn0020261	pcm	71	41.345	Drosophila_melanogaster
ENSPLAG00000021653	xrn1	83	69.369	ENSETEG00000003978	XRN1	78	70.248	Echinops_telfairi
ENSPLAG00000021653	xrn1	99	64.440	ENSEASG00005002687	XRN1	99	78.764	Equus_asinus_asinus
ENSPLAG00000021653	xrn1	99	64.377	ENSECAG00000008301	XRN1	90	64.231	Equus_caballus
ENSPLAG00000021653	xrn1	84	72.011	ENSEEUG00000011323	XRN1	69	71.739	Erinaceus_europaeus
ENSPLAG00000021653	xrn1	99	73.905	ENSELUG00000000169	xrn1	91	73.708	Esox_lucius
ENSPLAG00000021653	xrn1	99	60.787	ENSFCAG00000027589	XRN1	99	80.349	Felis_catus
ENSPLAG00000021653	xrn1	99	63.609	ENSFALG00000007021	XRN1	92	63.475	Ficedula_albicollis
ENSPLAG00000021653	xrn1	99	63.456	ENSFDAG00000020494	XRN1	99	78.413	Fukomys_damarensis
ENSPLAG00000021653	xrn1	88	74.733	ENSGMOG00000006396	xrn1	80	74.979	Gadus_morhua
ENSPLAG00000021653	xrn1	99	63.961	ENSGALG00000002706	XRN1	91	63.597	Gallus_gallus
ENSPLAG00000021653	xrn1	99	78.904	ENSGACG00000014328	xrn1	91	78.778	Gasterosteus_aculeatus
ENSPLAG00000021653	xrn1	99	63.720	ENSGAGG00000017535	XRN1	96	63.452	Gopherus_agassizii
ENSPLAG00000021653	xrn1	99	64.213	ENSGGOG00000008047	XRN1	91	63.395	Gorilla_gorilla
ENSPLAG00000021653	xrn1	99	82.476	ENSHBUG00000005908	xrn1	96	84.000	Haplochromis_burtoni
ENSPLAG00000021653	xrn1	99	63.828	ENSHGLG00000014476	XRN1	99	78.095	Heterocephalus_glaber_female
ENSPLAG00000021653	xrn1	99	63.828	ENSHGLG00100015130	XRN1	99	78.095	Heterocephalus_glaber_male
ENSPLAG00000021653	xrn1	93	83.333	ENSHCOG00000014062	xrn1	90	83.333	Hippocampus_comes
ENSPLAG00000021653	xrn1	99	72.229	ENSIPUG00000015229	xrn1	91	72.101	Ictalurus_punctatus
ENSPLAG00000021653	xrn1	99	63.331	ENSSTOG00000013552	XRN1	99	77.778	Ictidomys_tridecemlineatus
ENSPLAG00000021653	xrn1	97	63.514	ENSJJAG00000010863	Xrn1	99	77.521	Jaculus_jaculus
ENSPLAG00000021653	xrn1	99	81.795	ENSKMAG00000021356	xrn1	95	85.865	Kryptolebias_marmoratus
ENSPLAG00000021653	xrn1	99	79.808	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSPLAG00000021653	xrn1	99	65.188	ENSLACG00000009020	XRN1	91	65.122	Latimeria_chalumnae
ENSPLAG00000021653	xrn1	99	68.879	ENSLOCG00000007944	xrn1	92	68.675	Lepisosteus_oculatus
ENSPLAG00000021653	xrn1	68	73.629	ENSLAFG00000015426	XRN1	99	73.596	Loxodonta_africana
ENSPLAG00000021653	xrn1	99	64.295	ENSMFAG00000032599	XRN1	91	63.458	Macaca_fascicularis
ENSPLAG00000021653	xrn1	99	64.295	ENSMMUG00000014038	XRN1	91	63.458	Macaca_mulatta
ENSPLAG00000021653	xrn1	99	64.231	ENSMNEG00000034217	XRN1	91	63.729	Macaca_nemestrina
ENSPLAG00000021653	xrn1	94	85.939	ENSMAMG00000013219	xrn1	92	87.526	Mastacembelus_armatus
ENSPLAG00000021653	xrn1	99	84.805	ENSMZEG00005015099	xrn1	90	84.675	Maylandia_zebra
ENSPLAG00000021653	xrn1	97	62.524	ENSMGAG00000006333	XRN1	91	62.155	Meleagris_gallopavo
ENSPLAG00000021653	xrn1	99	64.512	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSPLAG00000021653	xrn1	62	78.413	ENSMOCG00000008665	Xrn1	99	78.254	Microtus_ochrogaster
ENSPLAG00000021653	xrn1	99	64.176	ENSMODG00000021236	XRN1	90	64.140	Monodelphis_domestica
ENSPLAG00000021653	xrn1	97	78.788	ENSMALG00000004098	xrn1	90	78.730	Monopterus_albus
ENSPLAG00000021653	xrn1	93	78.628	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSPLAG00000021653	xrn1	97	63.395	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSPLAG00000021653	xrn1	97	63.314	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSPLAG00000021653	xrn1	97	63.458	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSPLAG00000021653	xrn1	99	64.498	ENSMPUG00000012040	XRN1	90	64.096	Mustela_putorius_furo
ENSPLAG00000021653	xrn1	99	63.184	ENSMLUG00000016885	XRN1	91	62.958	Myotis_lucifugus
ENSPLAG00000021653	xrn1	62	74.444	ENSNGAG00000023964	Xrn1	99	73.885	Nannospalax_galili
ENSPLAG00000021653	xrn1	99	63.850	ENSNLEG00000004726	XRN1	91	63.015	Nomascus_leucogenys
ENSPLAG00000021653	xrn1	61	95.876	ENSMEUG00000014473	-	54	96.117	Notamacropus_eugenii
ENSPLAG00000021653	xrn1	67	69.343	ENSOPRG00000007337	-	55	69.343	Ochotona_princeps
ENSPLAG00000021653	xrn1	97	85.562	ENSONIG00000016673	xrn1	99	85.429	Oreochromis_niloticus
ENSPLAG00000021653	xrn1	90	61.608	ENSOANG00000006735	XRN1	90	60.589	Ornithorhynchus_anatinus
ENSPLAG00000021653	xrn1	99	63.772	ENSOCUG00000001861	XRN1	90	62.981	Oryctolagus_cuniculus
ENSPLAG00000021653	xrn1	99	82.705	ENSORLG00000013005	xrn1	89	82.640	Oryzias_latipes
ENSPLAG00000021653	xrn1	99	82.575	ENSORLG00020005559	xrn1	90	82.510	Oryzias_latipes_hni
ENSPLAG00000021653	xrn1	99	81.990	ENSORLG00015022523	xrn1	90	81.925	Oryzias_latipes_hsok
ENSPLAG00000021653	xrn1	99	82.965	ENSOMEG00000015397	xrn1	88	87.438	Oryzias_melastigma
ENSPLAG00000021653	xrn1	99	62.683	ENSOGAG00000000170	XRN1	90	62.047	Otolemur_garnettii
ENSPLAG00000021653	xrn1	99	64.277	ENSOARG00000006343	XRN1	90	63.729	Ovis_aries
ENSPLAG00000021653	xrn1	99	64.140	ENSPPAG00000010180	XRN1	91	63.318	Pan_paniscus
ENSPLAG00000021653	xrn1	99	64.594	ENSPPRG00000007125	XRN1	91	63.982	Panthera_pardus
ENSPLAG00000021653	xrn1	99	64.657	ENSPTIG00000021081	XRN1	91	63.982	Panthera_tigris_altaica
ENSPLAG00000021653	xrn1	99	64.140	ENSPTRG00000015482	XRN1	91	63.318	Pan_troglodytes
ENSPLAG00000021653	xrn1	99	64.295	ENSPANG00000010638	XRN1	91	63.458	Papio_anubis
ENSPLAG00000021653	xrn1	99	63.948	ENSPSIG00000018050	XRN1	91	64.027	Pelodiscus_sinensis
ENSPLAG00000021653	xrn1	63	85.669	ENSPMGG00000002648	xrn1	99	86.145	Periophthalmus_magnuspinnatus
ENSPLAG00000021653	xrn1	62	78.254	ENSPEMG00000020610	Xrn1	99	77.937	Peromyscus_maniculatus_bairdii
ENSPLAG00000021653	xrn1	71	48.949	ENSPMAG00000002975	xrn1	90	77.011	Petromyzon_marinus
ENSPLAG00000021653	xrn1	99	65.142	ENSPCIG00000028735	XRN1	99	78.219	Phascolarctos_cinereus
ENSPLAG00000021653	xrn1	100	99.422	ENSPFOG00000013932	xrn1	100	99.422	Poecilia_formosa
ENSPLAG00000021653	xrn1	97	98.933	ENSPMEG00000003076	xrn1	95	98.933	Poecilia_mexicana
ENSPLAG00000021653	xrn1	99	97.398	ENSPREG00000021147	xrn1	90	97.398	Poecilia_reticulata
ENSPLAG00000021653	xrn1	99	64.231	ENSPPYG00000014172	XRN1	90	63.458	Pongo_abelii
ENSPLAG00000021653	xrn1	95	60.516	ENSPCAG00000005638	XRN1	96	60.225	Procavia_capensis
ENSPLAG00000021653	xrn1	99	64.313	ENSPCOG00000013089	XRN1	99	77.848	Propithecus_coquereli
ENSPLAG00000021653	xrn1	86	70.354	ENSPVAG00000016265	XRN1	74	85.549	Pteropus_vampyrus
ENSPLAG00000021653	xrn1	99	83.453	ENSPNYG00000010570	xrn1	90	83.453	Pundamilia_nyererei
ENSPLAG00000021653	xrn1	99	70.141	ENSPNAG00000023531	xrn1	91	69.885	Pygocentrus_nattereri
ENSPLAG00000021653	xrn1	97	63.098	ENSRNOG00000042951	Xrn1	91	62.414	Rattus_norvegicus
ENSPLAG00000021653	xrn1	99	64.168	ENSRBIG00000041227	XRN1	91	63.268	Rhinopithecus_bieti
ENSPLAG00000021653	xrn1	77	33.055	YGL173C	XRN1	73	52.446	Saccharomyces_cerevisiae
ENSPLAG00000021653	xrn1	99	64.404	ENSSBOG00000029561	XRN1	91	63.590	Saimiri_boliviensis_boliviensis
ENSPLAG00000021653	xrn1	97	63.860	ENSSHAG00000016207	XRN1	90	63.777	Sarcophilus_harrisii
ENSPLAG00000021653	xrn1	99	70.820	ENSSFOG00015024211	xrn1	92	70.103	Scleropages_formosus
ENSPLAG00000021653	xrn1	99	81.608	ENSSMAG00000016534	xrn1	92	81.479	Scophthalmus_maximus
ENSPLAG00000021653	xrn1	87	88.925	ENSSDUG00000010306	xrn1	86	88.925	Seriola_dumerili
ENSPLAG00000021653	xrn1	95	87.028	ENSSLDG00000021543	xrn1	90	87.028	Seriola_lalandi_dorsalis
ENSPLAG00000021653	xrn1	66	67.526	ENSSARG00000007741	-	75	67.320	Sorex_araneus
ENSPLAG00000021653	xrn1	99	64.569	ENSTGUG00000008498	XRN1	91	64.345	Taeniopygia_guttata
ENSPLAG00000021653	xrn1	97	77.896	ENSTRUG00000004895	xrn1	97	86.780	Takifugu_rubripes
ENSPLAG00000021653	xrn1	99	74.229	ENSTNIG00000017615	xrn1	91	73.573	Tetraodon_nigroviridis
ENSPLAG00000021653	xrn1	82	85.215	ENSTBEG00000003256	XRN1	78	84.881	Tupaia_belangeri
ENSPLAG00000021653	xrn1	94	62.724	ENSTTRG00000012914	XRN1	90	60.266	Tursiops_truncatus
ENSPLAG00000021653	xrn1	99	62.921	ENSUAMG00000001608	XRN1	99	73.734	Ursus_americanus
ENSPLAG00000021653	xrn1	99	64.317	ENSUMAG00000013625	XRN1	90	63.706	Ursus_maritimus
ENSPLAG00000021653	xrn1	99	62.167	ENSVPAG00000004690	XRN1	90	61.802	Vicugna_pacos
ENSPLAG00000021653	xrn1	81	83.333	ENSVVUG00000024461	XRN1	98	83.333	Vulpes_vulpes
ENSPLAG00000021653	xrn1	99	63.774	ENSXETG00000000619	xrn1	98	85.638	Xenopus_tropicalis
ENSPLAG00000021653	xrn1	99	88.911	ENSXCOG00000007917	xrn1	90	88.911	Xiphophorus_couchianus
ENSPLAG00000021653	xrn1	90	95.156	ENSXMAG00000018320	xrn1	87	94.910	Xiphophorus_maculatus