EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000024026 (Gene tree)
Gene ID: 106958623
Gene Symbol: ncl
Alias: -
Full Name: nucleolin
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 7930 bases
Position: chrKQ546316.1:87135-95064
Accession: 106958623
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000018993	RRM_1	PF00076.22	3.4e-61	1	4
ENSPLAP00000018993	RRM_1	PF00076.22	3.4e-61	2	4
ENSPLAP00000018993	RRM_1	PF00076.22	3.4e-61	3	4
ENSPLAP00000018993	RRM_1	PF00076.22	3.4e-61	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000017158	-	3870	XM_015050605	ENSPLAP00000018993	733 (aa)	XP_014906091	UPI00072E7384

Gene Model

Click here to download ENSPLAG00000024026's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000024026's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000024026	ncl	50	42.931	ENSPLAG00000000597	-	78	42.119

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000024026	ncl	61	40.295	ENSAPOG00000014534	-	67	41.969	Acanthochromis_polyacanthus
ENSPLAG00000024026	ncl	57	81.667	ENSAPOG00000023888	ncl	65	80.043	Acanthochromis_polyacanthus
ENSPLAG00000024026	ncl	51	76.267	ENSACIG00000013234	ncl	71	67.467	Amphilophus_citrinellus
ENSPLAG00000024026	ncl	60	38.865	ENSAOCG00000014792	-	61	40.885	Amphiprion_ocellaris
ENSPLAG00000024026	ncl	60	38.865	ENSAPEG00000013612	-	60	41.146	Amphiprion_percula
ENSPLAG00000024026	ncl	65	41.304	ENSATEG00000019862	-	80	45.361	Anabas_testudineus
ENSPLAG00000024026	ncl	72	78.464	ENSATEG00000013343	ncl	77	79.588	Anabas_testudineus
ENSPLAG00000024026	ncl	50	62.730	ENSACAG00000001006	-	52	61.417	Anolis_carolinensis
ENSPLAG00000024026	ncl	51	67.905	ENSAMXG00000001647	ncl	80	71.572	Astyanax_mexicanus
ENSPLAG00000024026	ncl	51	62.368	ENSCPBG00000016444	-	56	62.005	Chrysemys_picta_bellii
ENSPLAG00000024026	ncl	64	77.836	ENSCSEG00000015089	ncl	69	74.675	Cynoglossus_semilaevis
ENSPLAG00000024026	ncl	57	73.460	ENSDARG00000002710	ncl	79	74.757	Danio_rerio
ENSPLAG00000024026	ncl	58	45.991	ENSELUG00000022826	-	80	47.721	Esox_lucius
ENSPLAG00000024026	ncl	57	73.176	ENSELUG00000006033	ncl	56	74.074	Esox_lucius
ENSPLAG00000024026	ncl	64	80.533	ENSFHEG00000018000	ncl	85	79.521	Fundulus_heteroclitus
ENSPLAG00000024026	ncl	52	67.632	ENSGMOG00000001341	ncl	72	65.227	Gadus_morhua
ENSPLAG00000024026	ncl	51	59.791	ENSGALG00000032930	NCL	55	59.269	Gallus_gallus
ENSPLAG00000024026	ncl	62	94.530	ENSGAFG00000015375	ncl	62	94.541	Gambusia_affinis
ENSPLAG00000024026	ncl	85	61.526	ENSGACG00000008970	ncl	72	72.549	Gasterosteus_aculeatus
ENSPLAG00000024026	ncl	51	63.158	ENSGAGG00000013330	-	56	62.797	Gopherus_agassizii
ENSPLAG00000024026	ncl	50	78.378	ENSHBUG00000006869	ncl	66	75.269	Haplochromis_burtoni
ENSPLAG00000024026	ncl	57	82.100	ENSKMAG00000008111	ncl	65	78.603	Kryptolebias_marmoratus
ENSPLAG00000024026	ncl	58	81.176	ENSLBEG00000019073	ncl	68	77.802	Labrus_bergylta
ENSPLAG00000024026	ncl	62	41.489	ENSLBEG00000007915	-	66	43.188	Labrus_bergylta
ENSPLAG00000024026	ncl	54	52.369	ENSLACG00000022167	-	76	54.167	Latimeria_chalumnae
ENSPLAG00000024026	ncl	78	63.208	ENSLACG00000009328	ncl	55	65.027	Latimeria_chalumnae
ENSPLAG00000024026	ncl	86	80.435	ENSMAMG00000002086	ncl	56	80.519	Mastacembelus_armatus
ENSPLAG00000024026	ncl	53	41.379	ENSMAMG00000003479	-	69	40.625	Mastacembelus_armatus
ENSPLAG00000024026	ncl	58	69.340	ENSMZEG00005017438	ncl	66	74.678	Maylandia_zebra
ENSPLAG00000024026	ncl	50	59.511	ENSMGAG00000008147	-	85	59.239	Meleagris_gallopavo
ENSPLAG00000024026	ncl	52	79.360	ENSMMOG00000008553	ncl	83	82.372	Mola_mola
ENSPLAG00000024026	ncl	51	55.527	ENSMODG00000002470	-	54	54.359	Monodelphis_domestica
ENSPLAG00000024026	ncl	93	68.865	ENSMALG00000014827	ncl	67	78.391	Monopterus_albus
ENSPLAG00000024026	ncl	53	57.935	ENSMEUG00000012335	-	57	57.107	Notamacropus_eugenii
ENSPLAG00000024026	ncl	51	37.701	ENSONIG00000010631	-	97	38.133	Oreochromis_niloticus
ENSPLAG00000024026	ncl	57	76.485	ENSONIG00000012508	ncl	65	74.946	Oreochromis_niloticus
ENSPLAG00000024026	ncl	53	58.354	ENSOANG00000008732	-	61	59.326	Ornithorhynchus_anatinus
ENSPLAG00000024026	ncl	55	37.589	ENSORLG00000004645	-	86	36.341	Oryzias_latipes
ENSPLAG00000024026	ncl	58	81.882	ENSORLG00000007055	ncl	64	79.872	Oryzias_latipes
ENSPLAG00000024026	ncl	52	38.636	ENSORLG00020003497	-	74	36.815	Oryzias_latipes_hni
ENSPLAG00000024026	ncl	58	81.882	ENSORLG00020017943	ncl	64	79.872	Oryzias_latipes_hni
ENSPLAG00000024026	ncl	58	78.824	ENSORLG00015013815	ncl	86	83.654	Oryzias_latipes_hsok
ENSPLAG00000024026	ncl	52	38.384	ENSORLG00015006613	-	77	37.076	Oryzias_latipes_hsok
ENSPLAG00000024026	ncl	53	37.221	ENSOMEG00000015864	-	81	37.173	Oryzias_melastigma
ENSPLAG00000024026	ncl	52	82.415	ENSOMEG00000020786	ncl	63	78.981	Oryzias_melastigma
ENSPLAG00000024026	ncl	57	72.749	ENSPKIG00000002604	ncl	62	70.626	Paramormyrops_kingsleyae
ENSPLAG00000024026	ncl	57	76.190	ENSPMGG00000004709	ncl	80	72.168	Periophthalmus_magnuspinnatus
ENSPLAG00000024026	ncl	53	57.214	ENSPCIG00000003293	-	56	56.359	Phascolarctos_cinereus
ENSPLAG00000024026	ncl	100	98.370	ENSPFOG00000024205	ncl	100	98.370	Poecilia_formosa
ENSPLAG00000024026	ncl	100	98.098	ENSPMEG00000006000	ncl	100	98.098	Poecilia_mexicana
ENSPLAG00000024026	ncl	58	68.941	ENSPNYG00000020494	ncl	66	75.000	Pundamilia_nyererei
ENSPLAG00000024026	ncl	57	68.720	ENSPNAG00000006192	ncl	63	66.307	Pygocentrus_nattereri
ENSPLAG00000024026	ncl	53	50.566	ENSSHAG00000007489	-	50	49.621	Sarcophilus_harrisii
ENSPLAG00000024026	ncl	61	71.461	ENSSFOG00015008583	ncl	68	66.239	Scleropages_formosus
ENSPLAG00000024026	ncl	57	79.196	ENSSMAG00000021241	ncl	70	71.780	Scophthalmus_maximus
ENSPLAG00000024026	ncl	61	39.270	ENSSDUG00000010922	-	70	41.299	Seriola_dumerili
ENSPLAG00000024026	ncl	52	82.723	ENSSDUG00000006128	ncl	87	82.677	Seriola_dumerili
ENSPLAG00000024026	ncl	86	82.984	ENSSLDG00000002012	ncl	66	67.807	Seriola_lalandi_dorsalis
ENSPLAG00000024026	ncl	56	41.709	ENSSLDG00000015784	-	65	41.514	Seriola_lalandi_dorsalis
ENSPLAG00000024026	ncl	51	58.794	ENSSPUG00000008244	-	61	57.683	Sphenodon_punctatus
ENSPLAG00000024026	ncl	53	43.766	ENSSPAG00000001859	-	61	42.593	Stegastes_partitus
ENSPLAG00000024026	ncl	51	60.471	ENSTGUG00000009782	-	60	59.686	Taeniopygia_guttata
ENSPLAG00000024026	ncl	50	63.395	ENSXETG00000009517	ncl	54	62.865	Xenopus_tropicalis
ENSPLAG00000024026	ncl	58	58.333	ENSXCOG00000003524	ncl	99	76.334	Xiphophorus_couchianus
ENSPLAG00000024026	ncl	50	41.316	ENSXCOG00000007369	-	89	41.053	Xiphophorus_couchianus
ENSPLAG00000024026	ncl	62	94.348	ENSXMAG00000005914	ncl	63	94.577	Xiphophorus_maculatus