EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000000008 (Gene tree)
Gene ID: -
Gene Symbol: rab5c (1 of many)
Alias: -
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 36232 bases
Position: chrGL476426:408368-444599
Accession: ZDB-GENE-031118-30
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000000009	MMR_HSR1	PF01926.23	4.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000000009	-	828	-	ENSPMAP00000000009	219 (aa)	-	S4R480

Gene Model

Click here to download ENSPMAG00000000008's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000000008's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000000008	rab5c	74	44.172	ENSPMAG00000006105	rab30	77	44.172
ENSPMAG00000000008	rab5c	68	37.654	ENSPMAG00000005537	rab27a	73	37.654
ENSPMAG00000000008	rab5c	74	41.916	ENSPMAG00000007247	rab33ba	69	41.916
ENSPMAG00000000008	rab5c	74	31.902	ENSPMAG00000004548	hrasb	84	31.902
ENSPMAG00000000008	rab5c	74	45.342	ENSPMAG00000002006	-	75	45.342
ENSPMAG00000000008	rab5c	77	30.994	ENSPMAG00000006671	si:cabz01085950.1	85	30.994
ENSPMAG00000000008	rab5c	74	40.123	ENSPMAG00000005938	-	97	40.123
ENSPMAG00000000008	rab5c	74	47.853	ENSPMAG00000001403	-	81	47.853
ENSPMAG00000000008	rab5c	88	40.580	ENSPMAG00000006171	-	97	40.580
ENSPMAG00000000008	rab5c	100	75.799	ENSPMAG00000001399	rab5c	100	75.799
ENSPMAG00000000008	rab5c	100	75.342	ENSPMAG00000007867	rab5c	100	75.342
ENSPMAG00000000008	rab5c	87	31.731	ENSPMAG00000004657	rab36	86	31.731
ENSPMAG00000000008	rab5c	76	30.723	ENSPMAG00000006835	-	76	31.461
ENSPMAG00000000008	rab5c	79	42.938	ENSPMAG00000009335	-	86	42.938
ENSPMAG00000000008	rab5c	53	39.316	ENSPMAG00000004439	rab20	53	40.678
ENSPMAG00000000008	rab5c	80	39.779	ENSPMAG00000005322	rab18b	87	39.779
ENSPMAG00000000008	rab5c	77	45.833	ENSPMAG00000001801	rab1ba	82	45.833
ENSPMAG00000000008	rab5c	81	42.938	ENSPMAG00000008764	RAB2B	96	42.938

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000000008	rab5c	100	78.829	ENSG00000108774	RAB5C	100	86.822	Homo_sapiens
ENSPMAG00000000008	rab5c	88	86.458	ENSAPOG00000016864	rab5c	98	79.186	Acanthochromis_polyacanthus
ENSPMAG00000000008	rab5c	100	78.571	ENSAMEG00000006003	RAB5C	99	78.571	Ailuropoda_melanoleuca
ENSPMAG00000000008	rab5c	88	86.458	ENSACIG00000010896	rab5c	98	78.733	Amphilophus_citrinellus
ENSPMAG00000000008	rab5c	88	86.458	ENSAOCG00000016614	rab5c	98	79.186	Amphiprion_ocellaris
ENSPMAG00000000008	rab5c	84	87.568	ENSAPEG00000017868	-	96	79.907	Amphiprion_percula
ENSPMAG00000000008	rab5c	88	86.458	ENSATEG00000001937	rab5c	99	78.733	Anabas_testudineus
ENSPMAG00000000008	rab5c	88	86.458	ENSANAG00000025390	RAB5C	92	86.458	Aotus_nancymaae
ENSPMAG00000000008	rab5c	88	86.979	ENSACLG00000002706	rab5c	98	79.186	Astatotilapia_calliptera
ENSPMAG00000000008	rab5c	96	78.037	ENSACLG00000008615	-	99	76.339	Astatotilapia_calliptera
ENSPMAG00000000008	rab5c	88	86.458	ENSAMXG00000043717	rab5c	98	78.733	Astyanax_mexicanus
ENSPMAG00000000008	rab5c	84	85.870	ENSAMXG00000037267	-	87	85.106	Astyanax_mexicanus
ENSPMAG00000000008	rab5c	100	78.378	ENSBTAG00000006982	RAB5C	99	78.378	Bos_taurus
ENSPMAG00000000008	rab5c	99	73.516	WBGene00004268	rab-5	99	73.516	Caenorhabditis_elegans
ENSPMAG00000000008	rab5c	100	78.571	ENSCAFG00000015629	RAB5C	99	78.571	Canis_familiaris
ENSPMAG00000000008	rab5c	100	78.571	ENSCAFG00020013537	RAB5C	99	78.571	Canis_lupus_dingo
ENSPMAG00000000008	rab5c	100	78.378	ENSCHIG00000012960	RAB5C	99	78.378	Capra_hircus
ENSPMAG00000000008	rab5c	100	78.829	ENSTSYG00000030531	RAB5C	99	78.829	Carlito_syrichta
ENSPMAG00000000008	rab5c	100	78.378	ENSCCAG00000025940	RAB5C	99	78.378	Cebus_capucinus
ENSPMAG00000000008	rab5c	100	78.829	ENSCATG00000040873	RAB5C	99	78.829	Cercocebus_atys
ENSPMAG00000000008	rab5c	100	78.829	ENSCLAG00000016650	RAB5C	99	78.829	Chinchilla_lanigera
ENSPMAG00000000008	rab5c	84	87.978	ENSCHOG00000009886	RAB5C	100	87.978	Choloepus_hoffmanni
ENSPMAG00000000008	rab5c	99	75.000	ENSCING00000003340	-	99	75.000	Ciona_intestinalis
ENSPMAG00000000008	rab5c	99	72.889	ENSCSAVG00000000613	-	99	82.036	Ciona_savignyi
ENSPMAG00000000008	rab5c	100	78.829	ENSCGRG00001014226	Rab5c	99	78.829	Cricetulus_griseus_chok1gshd
ENSPMAG00000000008	rab5c	100	78.829	ENSCGRG00000007534	Rab5c	99	78.829	Cricetulus_griseus_crigri
ENSPMAG00000000008	rab5c	99	78.733	ENSCSEG00000017024	rab5c	98	78.733	Cynoglossus_semilaevis
ENSPMAG00000000008	rab5c	88	85.938	ENSCVAG00000009550	rab5c	98	78.281	Cyprinodon_variegatus
ENSPMAG00000000008	rab5c	100	77.679	ENSDNOG00000038853	RAB5C	94	83.590	Dasypus_novemcinctus
ENSPMAG00000000008	rab5c	100	78.829	ENSDORG00000006819	Rab5c	99	78.829	Dipodomys_ordii
ENSPMAG00000000008	rab5c	98	74.074	FBgn0014010	Rab5	94	74.074	Drosophila_melanogaster
ENSPMAG00000000008	rab5c	100	75.342	ENSEBUG00000014794	rab5c	100	75.342	Eptatretus_burgeri
ENSPMAG00000000008	rab5c	100	78.829	ENSEASG00005009281	RAB5C	99	78.829	Equus_asinus_asinus
ENSPMAG00000000008	rab5c	100	78.829	ENSECAG00000025054	RAB5C	99	78.829	Equus_caballus
ENSPMAG00000000008	rab5c	100	78.378	ENSEEUG00000002790	RAB5C	99	78.378	Erinaceus_europaeus
ENSPMAG00000000008	rab5c	99	76.923	ENSELUG00000010439	-	98	76.923	Esox_lucius
ENSPMAG00000000008	rab5c	88	85.417	ENSELUG00000018516	rab5c	87	85.052	Esox_lucius
ENSPMAG00000000008	rab5c	100	78.378	ENSFCAG00000002148	RAB5C	99	78.378	Felis_catus
ENSPMAG00000000008	rab5c	100	77.232	ENSFDAG00000021541	RAB5C	99	77.232	Fukomys_damarensis
ENSPMAG00000000008	rab5c	99	75.676	ENSFHEG00000015268	-	99	75.676	Fundulus_heteroclitus
ENSPMAG00000000008	rab5c	88	85.938	ENSFHEG00000012117	rab5c	98	78.281	Fundulus_heteroclitus
ENSPMAG00000000008	rab5c	77	85.119	ENSGMOG00000001876	-	97	85.119	Gadus_morhua
ENSPMAG00000000008	rab5c	88	86.458	ENSGMOG00000015096	rab5c	98	78.733	Gadus_morhua
ENSPMAG00000000008	rab5c	88	86.458	ENSGAFG00000000884	rab5c	98	78.733	Gambusia_affinis
ENSPMAG00000000008	rab5c	89	84.615	ENSGAFG00000003642	-	85	84.615	Gambusia_affinis
ENSPMAG00000000008	rab5c	88	85.417	ENSGACG00000008659	rab5c	98	78.281	Gasterosteus_aculeatus
ENSPMAG00000000008	rab5c	100	78.829	ENSGGOG00000005472	RAB5C	99	78.829	Gorilla_gorilla
ENSPMAG00000000008	rab5c	96	78.037	ENSHBUG00000006823	-	99	76.339	Haplochromis_burtoni
ENSPMAG00000000008	rab5c	88	86.979	ENSHBUG00000002014	rab5c	98	79.186	Haplochromis_burtoni
ENSPMAG00000000008	rab5c	100	76.339	ENSHGLG00000012067	RAB5C	99	76.339	Heterocephalus_glaber_female
ENSPMAG00000000008	rab5c	88	86.458	ENSHCOG00000004662	rab5c	97	78.733	Hippocampus_comes
ENSPMAG00000000008	rab5c	93	76.329	ENSHCOG00000020238	-	99	73.214	Hippocampus_comes
ENSPMAG00000000008	rab5c	90	80.597	ENSIPUG00000020082	rab5c	98	79.186	Ictalurus_punctatus
ENSPMAG00000000008	rab5c	100	78.222	ENSSTOG00000006620	RAB5C	99	78.222	Ictidomys_tridecemlineatus
ENSPMAG00000000008	rab5c	100	78.125	ENSJJAG00000021181	Rab5c	99	78.125	Jaculus_jaculus
ENSPMAG00000000008	rab5c	88	85.417	ENSKMAG00000020038	rab5c	98	77.828	Kryptolebias_marmoratus
ENSPMAG00000000008	rab5c	99	74.775	ENSKMAG00000017417	-	99	74.775	Kryptolebias_marmoratus
ENSPMAG00000000008	rab5c	87	82.292	ENSLBEG00000010408	-	99	74.439	Labrus_bergylta
ENSPMAG00000000008	rab5c	88	85.938	ENSLBEG00000004128	rab5c	98	77.828	Labrus_bergylta
ENSPMAG00000000008	rab5c	99	77.376	ENSLOCG00000012566	rab5c	100	77.376	Lepisosteus_oculatus
ENSPMAG00000000008	rab5c	100	78.829	ENSMFAG00000039627	RAB5C	99	78.829	Macaca_fascicularis
ENSPMAG00000000008	rab5c	100	78.829	ENSMNEG00000000355	RAB5C	99	78.829	Macaca_nemestrina
ENSPMAG00000000008	rab5c	99	74.775	ENSMAMG00000016207	-	99	74.775	Mastacembelus_armatus
ENSPMAG00000000008	rab5c	88	86.458	ENSMAMG00000022322	rab5c	98	78.733	Mastacembelus_armatus
ENSPMAG00000000008	rab5c	96	78.037	ENSMZEG00005021090	-	99	76.339	Maylandia_zebra
ENSPMAG00000000008	rab5c	88	86.979	ENSMZEG00005022735	rab5c	98	79.186	Maylandia_zebra
ENSPMAG00000000008	rab5c	100	78.829	ENSMAUG00000015005	Rab5c	99	78.829	Mesocricetus_auratus
ENSPMAG00000000008	rab5c	100	78.378	ENSMICG00000041608	RAB5C	99	78.378	Microcebus_murinus
ENSPMAG00000000008	rab5c	100	78.829	ENSMOCG00000018531	-	99	78.829	Microtus_ochrogaster
ENSPMAG00000000008	rab5c	99	79.638	ENSMMOG00000020621	rab5c	98	79.638	Mola_mola
ENSPMAG00000000008	rab5c	100	74.554	ENSMALG00000022348	-	99	74.554	Monopterus_albus
ENSPMAG00000000008	rab5c	96	75.234	ENSMALG00000006052	rab5c	96	75.000	Monopterus_albus
ENSPMAG00000000008	rab5c	100	78.829	MGP_CAROLIEiJ_G0017184	Rab5c	99	78.829	Mus_caroli
ENSPMAG00000000008	rab5c	100	78.829	ENSMUSG00000019173	Rab5c	99	78.829	Mus_musculus
ENSPMAG00000000008	rab5c	100	78.829	MGP_PahariEiJ_G0018314	Rab5c	99	78.829	Mus_pahari
ENSPMAG00000000008	rab5c	100	78.829	MGP_SPRETEiJ_G0018027	Rab5c	99	78.829	Mus_spretus
ENSPMAG00000000008	rab5c	100	78.571	ENSMPUG00000010554	RAB5C	99	78.571	Mustela_putorius_furo
ENSPMAG00000000008	rab5c	100	78.829	ENSNGAG00000010286	Rab5c	99	78.829	Nannospalax_galili
ENSPMAG00000000008	rab5c	96	78.037	ENSNBRG00000016922	-	99	76.339	Neolamprologus_brichardi
ENSPMAG00000000008	rab5c	88	86.458	ENSNBRG00000018165	rab5c	98	78.733	Neolamprologus_brichardi
ENSPMAG00000000008	rab5c	84	81.421	ENSOPRG00000008255	RAB5C	100	81.421	Ochotona_princeps
ENSPMAG00000000008	rab5c	100	78.378	ENSODEG00000017920	RAB5C	99	78.378	Octodon_degus
ENSPMAG00000000008	rab5c	88	86.458	ENSONIG00000001113	rab5c	98	78.281	Oreochromis_niloticus
ENSPMAG00000000008	rab5c	88	85.417	ENSORLG00000003882	rab5c	99	77.828	Oryzias_latipes
ENSPMAG00000000008	rab5c	99	78.281	ENSORLG00020008388	rab5c	99	78.281	Oryzias_latipes_hni
ENSPMAG00000000008	rab5c	88	85.417	ENSORLG00015021900	rab5c	99	77.828	Oryzias_latipes_hsok
ENSPMAG00000000008	rab5c	88	85.417	ENSOMEG00000023078	rab5c	99	77.828	Oryzias_melastigma
ENSPMAG00000000008	rab5c	100	79.279	ENSOGAG00000009456	RAB5C	99	79.279	Otolemur_garnettii
ENSPMAG00000000008	rab5c	100	78.378	ENSOARG00000018768	RAB5C	99	78.378	Ovis_aries
ENSPMAG00000000008	rab5c	100	78.829	ENSPPAG00000037206	RAB5C	99	78.829	Pan_paniscus
ENSPMAG00000000008	rab5c	100	78.378	ENSPPRG00000005745	RAB5C	99	78.378	Panthera_pardus
ENSPMAG00000000008	rab5c	100	78.378	ENSPTIG00000008177	RAB5C	99	78.378	Panthera_tigris_altaica
ENSPMAG00000000008	rab5c	100	78.829	ENSPTRG00000009194	RAB5C	99	78.829	Pan_troglodytes
ENSPMAG00000000008	rab5c	99	78.733	ENSPKIG00000001237	-	99	78.733	Paramormyrops_kingsleyae
ENSPMAG00000000008	rab5c	99	78.281	ENSPKIG00000020112	-	99	78.281	Paramormyrops_kingsleyae
ENSPMAG00000000008	rab5c	86	85.185	ENSPMGG00000010792	rab5c	98	77.523	Periophthalmus_magnuspinnatus
ENSPMAG00000000008	rab5c	100	78.829	ENSPEMG00000017971	Rab5c	99	78.829	Peromyscus_maniculatus_bairdii
ENSPMAG00000000008	rab5c	100	78.829	ENSPCIG00000020225	-	99	78.829	Phascolarctos_cinereus
ENSPMAG00000000008	rab5c	100	76.682	ENSPLAG00000016333	-	99	76.682	Poecilia_latipinna
ENSPMAG00000000008	rab5c	88	86.458	ENSPLAG00000004790	rab5c	98	78.733	Poecilia_latipinna
ENSPMAG00000000008	rab5c	89	84.615	ENSPMEG00000012614	-	85	84.615	Poecilia_mexicana
ENSPMAG00000000008	rab5c	88	86.458	ENSPMEG00000011336	rab5c	98	78.733	Poecilia_mexicana
ENSPMAG00000000008	rab5c	87	83.246	ENSPREG00000022167	-	91	82.812	Poecilia_reticulata
ENSPMAG00000000008	rab5c	88	86.458	ENSPREG00000010146	rab5c	98	78.733	Poecilia_reticulata
ENSPMAG00000000008	rab5c	100	78.829	ENSPPYG00000008398	RAB5C	99	78.829	Pongo_abelii
ENSPMAG00000000008	rab5c	100	78.829	ENSPCAG00000016412	RAB5C	99	78.829	Procavia_capensis
ENSPMAG00000000008	rab5c	100	77.232	ENSPCOG00000026327	RAB5C	99	77.232	Propithecus_coquereli
ENSPMAG00000000008	rab5c	100	78.829	ENSPVAG00000003867	RAB5C	99	78.829	Pteropus_vampyrus
ENSPMAG00000000008	rab5c	88	86.979	ENSPNYG00000010615	rab5c	98	79.186	Pundamilia_nyererei
ENSPMAG00000000008	rab5c	96	78.037	ENSPNYG00000015851	-	99	76.339	Pundamilia_nyererei
ENSPMAG00000000008	rab5c	84	84.783	ENSPNAG00000002218	-	86	83.598	Pygocentrus_nattereri
ENSPMAG00000000008	rab5c	99	78.281	ENSPNAG00000028138	rab5c	98	78.281	Pygocentrus_nattereri
ENSPMAG00000000008	rab5c	100	78.829	ENSRNOG00000018568	Rab5c	99	78.829	Rattus_norvegicus
ENSPMAG00000000008	rab5c	100	78.829	ENSRBIG00000031376	RAB5C	99	78.829	Rhinopithecus_bieti
ENSPMAG00000000008	rab5c	100	78.829	ENSRROG00000032895	RAB5C	99	78.829	Rhinopithecus_roxellana
ENSPMAG00000000008	rab5c	100	78.378	ENSSBOG00000032552	-	99	78.378	Saimiri_boliviensis_boliviensis
ENSPMAG00000000008	rab5c	100	78.829	ENSSHAG00000005267	-	99	78.829	Sarcophilus_harrisii
ENSPMAG00000000008	rab5c	100	77.477	ENSSFOG00015009988	-	99	77.477	Scleropages_formosus
ENSPMAG00000000008	rab5c	94	82.297	ENSSMAG00000007323	rab5c	98	78.378	Scophthalmus_maximus
ENSPMAG00000000008	rab5c	99	78.733	ENSSDUG00000023008	rab5c	98	78.733	Seriola_dumerili
ENSPMAG00000000008	rab5c	99	78.281	ENSSLDG00000017771	rab5c	98	78.281	Seriola_lalandi_dorsalis
ENSPMAG00000000008	rab5c	100	77.679	ENSSPUG00000012950	-	99	77.679	Sphenodon_punctatus
ENSPMAG00000000008	rab5c	88	86.458	ENSSPAG00000006436	rab5c	98	78.733	Stegastes_partitus
ENSPMAG00000000008	rab5c	100	78.378	ENSSSCG00000032467	RAB5C	99	78.378	Sus_scrofa
ENSPMAG00000000008	rab5c	88	85.938	ENSTRUG00000015590	rab5c	98	78.281	Takifugu_rubripes
ENSPMAG00000000008	rab5c	97	78.605	ENSTNIG00000011711	rab5c	95	78.605	Tetraodon_nigroviridis
ENSPMAG00000000008	rab5c	100	79.279	ENSTBEG00000007092	RAB5C	99	79.279	Tupaia_belangeri
ENSPMAG00000000008	rab5c	100	78.378	ENSTTRG00000006673	RAB5C	99	78.378	Tursiops_truncatus
ENSPMAG00000000008	rab5c	100	78.571	ENSUAMG00000024343	RAB5C	99	78.571	Ursus_americanus
ENSPMAG00000000008	rab5c	100	78.571	ENSUMAG00000023270	RAB5C	99	78.571	Ursus_maritimus
ENSPMAG00000000008	rab5c	89	84.615	ENSXCOG00000006300	-	85	84.615	Xiphophorus_couchianus
ENSPMAG00000000008	rab5c	88	86.458	ENSXCOG00000016788	rab5c	98	79.070	Xiphophorus_couchianus
ENSPMAG00000000008	rab5c	88	86.458	ENSXMAG00000003266	rab5c	98	78.733	Xiphophorus_maculatus
ENSPMAG00000000008	rab5c	100	77.130	ENSXMAG00000022179	-	99	77.130	Xiphophorus_maculatus