EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000000404 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 900 bases
Position: chrGL478964:311851-312750
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000000448	zf-C2H2	PF00096.26	3.3e-29	1	4
ENSPMAP00000000448	zf-C2H2	PF00096.26	3.3e-29	2	4
ENSPMAP00000000448	zf-C2H2	PF00096.26	3.3e-29	3	4
ENSPMAP00000000448	zf-C2H2	PF00096.26	3.3e-29	4	4
ENSPMAP00000000448	zf-met	PF12874.7	2e-11	1	3
ENSPMAP00000000448	zf-met	PF12874.7	2e-11	2	3
ENSPMAP00000000448	zf-met	PF12874.7	2e-11	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000000449	-	729	-	ENSPMAP00000000448	243 (aa)	-	S4R5G8

Gene Model

Click here to download ENSPMAG00000000404's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000000404's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000000404	-	56	38.182	ENSPMAG00000007492	-	90	38.182
ENSPMAG00000000404	-	100	43.243	ENSPMAG00000007983	-	97	43.243
ENSPMAG00000000404	-	93	35.606	ENSPMAG00000004189	-	98	35.443
ENSPMAG00000000404	-	99	59.524	ENSPMAG00000007084	-	100	59.524
ENSPMAG00000000404	-	99	36.742	ENSPMAG00000000706	-	100	37.023
ENSPMAG00000000404	-	96	33.755	ENSPMAG00000006198	ZBTB47	71	33.755
ENSPMAG00000000404	-	65	35.238	ENSPMAG00000004866	-	75	35.238
ENSPMAG00000000404	-	91	48.571	ENSPMAG00000003606	-	69	48.571
ENSPMAG00000000404	-	99	39.453	ENSPMAG00000000401	-	93	39.453
ENSPMAG00000000404	-	92	40.506	ENSPMAG00000002022	-	95	40.506
ENSPMAG00000000404	-	91	44.755	ENSPMAG00000008196	-	100	50.575
ENSPMAG00000000404	-	98	38.235	ENSPMAG00000005248	prdm5	100	38.235
ENSPMAG00000000404	-	99	42.391	ENSPMAG00000004710	znf236	59	42.391
ENSPMAG00000000404	-	97	37.079	ENSPMAG00000006708	-	97	37.079
ENSPMAG00000000404	-	91	43.750	ENSPMAG00000000839	-	94	43.750
ENSPMAG00000000404	-	100	37.931	ENSPMAG00000006066	znf366	98	37.931
ENSPMAG00000000404	-	99	41.441	ENSPMAG00000001294	-	100	41.441
ENSPMAG00000000404	-	99	44.444	ENSPMAG00000008879	-	100	42.657
ENSPMAG00000000404	-	99	31.674	ENSPMAG00000009794	PRDM15	60	31.674
ENSPMAG00000000404	-	91	37.956	ENSPMAG00000005692	-	99	37.956
ENSPMAG00000000404	-	94	48.734	ENSPMAG00000007731	-	94	48.734
ENSPMAG00000000404	-	99	37.308	ENSPMAG00000007500	ZNF436	100	36.889
ENSPMAG00000000404	-	91	38.710	ENSPMAG00000008691	-	99	38.710
ENSPMAG00000000404	-	99	51.613	ENSPMAG00000004344	-	99	51.613

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000000404	-	99	47.059	ENSAOCG00000013672	-	96	44.218	Amphiprion_ocellaris
ENSPMAG00000000404	-	99	44.186	ENSACLG00000008821	-	92	44.785	Astatotilapia_calliptera
ENSPMAG00000000404	-	99	44.843	ENSAMXG00000043423	-	74	43.694	Astyanax_mexicanus
ENSPMAG00000000404	-	99	45.249	ENSAMXG00000037981	-	77	45.249	Astyanax_mexicanus
ENSPMAG00000000404	-	99	40.724	ENSAMXG00000040677	-	94	40.724	Astyanax_mexicanus
ENSPMAG00000000404	-	99	39.844	ENSAMXG00000036241	-	82	38.494	Astyanax_mexicanus
ENSPMAG00000000404	-	99	46.667	ENSAMXG00000036633	-	62	46.763	Astyanax_mexicanus
ENSPMAG00000000404	-	99	43.966	ENSTSYG00000006246	-	78	43.966	Carlito_syrichta
ENSPMAG00000000404	-	98	49.138	ENSCGRG00001019143	-	61	49.138	Cricetulus_griseus_chok1gshd
ENSPMAG00000000404	-	99	45.029	ENSCGRG00001024303	-	97	44.767	Cricetulus_griseus_chok1gshd
ENSPMAG00000000404	-	99	42.609	ENSCGRG00001012803	-	78	42.609	Cricetulus_griseus_chok1gshd
ENSPMAG00000000404	-	99	42.609	ENSCGRG00000009742	-	78	42.609	Cricetulus_griseus_crigri
ENSPMAG00000000404	-	99	43.624	ENSCGRG00000008531	-	91	43.624	Cricetulus_griseus_crigri
ENSPMAG00000000404	-	99	38.919	ENSEBUG00000001121	-	81	38.919	Eptatretus_burgeri
ENSPMAG00000000404	-	99	40.476	ENSEBUG00000003590	-	73	40.000	Eptatretus_burgeri
ENSPMAG00000000404	-	99	36.771	ENSEBUG00000007375	-	87	36.771	Eptatretus_burgeri
ENSPMAG00000000404	-	99	42.697	ENSEBUG00000015834	-	82	42.697	Eptatretus_burgeri
ENSPMAG00000000404	-	99	39.286	ENSEBUG00000017017	-	67	38.172	Eptatretus_burgeri
ENSPMAG00000000404	-	99	37.443	ENSEBUG00000015993	-	68	37.443	Eptatretus_burgeri
ENSPMAG00000000404	-	95	42.135	ENSEBUG00000003236	-	93	42.135	Eptatretus_burgeri
ENSPMAG00000000404	-	99	40.637	ENSIPUG00000013315	-	97	40.637	Ictalurus_punctatus
ENSPMAG00000000404	-	99	41.969	ENSMAUG00000005691	-	79	41.969	Mesocricetus_auratus
ENSPMAG00000000404	-	99	40.000	ENSMAUG00000016437	-	99	40.000	Mesocricetus_auratus
ENSPMAG00000000404	-	99	42.000	ENSMOCG00000000365	-	83	42.000	Microtus_ochrogaster
ENSPMAG00000000404	-	99	42.778	MGP_CAROLIEiJ_G0018660	-	63	42.778	Mus_caroli
ENSPMAG00000000404	-	99	55.172	MGP_CAROLIEiJ_G0018683	Zfp493	81	55.172	Mus_caroli
ENSPMAG00000000404	-	99	44.311	ENSMUSG00000091474	2610021A01Rik	57	44.311	Mus_musculus
ENSPMAG00000000404	-	99	44.444	ENSMUSG00000074824	Rslcan18	67	44.444	Mus_musculus
ENSPMAG00000000404	-	99	43.114	MGP_PahariEiJ_G0012839	-	57	43.114	Mus_pahari
ENSPMAG00000000404	-	99	42.778	MGP_SPRETEiJ_G0019543	-	65	42.778	Mus_spretus
ENSPMAG00000000404	-	99	43.697	ENSPNAG00000014492	-	94	43.697	Pygocentrus_nattereri
ENSPMAG00000000404	-	99	43.946	ENSPNAG00000003017	-	87	43.439	Pygocentrus_nattereri
ENSPMAG00000000404	-	99	46.473	ENSSSCG00000040389	-	93	46.473	Sus_scrofa
ENSPMAG00000000404	-	93	38.346	ENSTRUG00000014476	-	87	38.346	Takifugu_rubripes