EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000000410 (Gene tree)
Gene ID: -
Gene Symbol: smg5
Alias: -
Full Name: SMG5 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 70218 bases
Position: chrGL476705:74594-144811
Accession: ZDB-GENE-050913-144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000000475	EST1	PF10374.9	3.3e-26	1	1
ENSPMAP00000000475	EST1_DNA_bind	PF10373.9	3.8e-42	1	2
ENSPMAP00000000475	EST1_DNA_bind	PF10373.9	3.8e-42	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000000476	-	3174	-	ENSPMAP00000000475	1027 (aa)	-	S4R5J5

Gene Model

Click here to download ENSPMAG00000000410's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000000410's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000000410	smg5	100	49.430	ENSG00000198952	SMG5	99	49.324	Homo_sapiens
ENSPMAG00000000410	smg5	91	61.557	ENSAPOG00000019690	smg5	98	49.902	Acanthochromis_polyacanthus
ENSPMAG00000000410	smg5	98	51.109	ENSAMEG00000014458	SMG5	100	50.486	Ailuropoda_melanoleuca
ENSPMAG00000000410	smg5	99	49.437	ENSACIG00000001353	smg5	99	49.378	Amphilophus_citrinellus
ENSPMAG00000000410	smg5	91	62.408	ENSAOCG00000019483	smg5	85	61.916	Amphiprion_ocellaris
ENSPMAG00000000410	smg5	91	62.654	ENSAPEG00000022949	smg5	98	48.976	Amphiprion_percula
ENSPMAG00000000410	smg5	98	50.190	ENSAPLG00000010263	SMG5	100	48.855	Anas_platyrhynchos
ENSPMAG00000000410	smg5	100	49.810	ENSANAG00000032899	SMG5	99	49.614	Aotus_nancymaae
ENSPMAG00000000410	smg5	99	49.384	ENSACLG00000009311	smg5	99	49.473	Astatotilapia_calliptera
ENSPMAG00000000410	smg5	91	64.090	ENSAMXG00000024616	smg5	86	64.090	Astyanax_mexicanus
ENSPMAG00000000410	smg5	100	50.000	ENSBTAG00000009435	SMG5	99	49.807	Bos_taurus
ENSPMAG00000000410	smg5	100	49.810	ENSCJAG00000005684	SMG5	99	49.614	Callithrix_jacchus
ENSPMAG00000000410	smg5	100	50.522	ENSCAFG00000016839	SMG5	99	50.096	Canis_familiaris
ENSPMAG00000000410	smg5	100	50.522	ENSCAFG00020006061	SMG5	99	50.096	Canis_lupus_dingo
ENSPMAG00000000410	smg5	100	50.236	ENSCHIG00000007709	SMG5	99	50.144	Capra_hircus
ENSPMAG00000000410	smg5	100	49.810	ENSTSYG00000004099	SMG5	99	49.087	Carlito_syrichta
ENSPMAG00000000410	smg5	99	37.729	ENSCAPG00000003631	SMG5	100	37.624	Cavia_aperea
ENSPMAG00000000410	smg5	99	49.856	ENSCPOG00000015696	SMG5	99	49.422	Cavia_porcellus
ENSPMAG00000000410	smg5	100	49.905	ENSCCAG00000027409	SMG5	99	49.710	Cebus_capucinus
ENSPMAG00000000410	smg5	100	49.525	ENSCATG00000030539	SMG5	99	49.421	Cercocebus_atys
ENSPMAG00000000410	smg5	100	49.290	ENSCLAG00000003983	SMG5	99	48.864	Chinchilla_lanigera
ENSPMAG00000000410	smg5	100	49.430	ENSCSAG00000002120	SMG5	99	49.324	Chlorocebus_sabaeus
ENSPMAG00000000410	smg5	55	59.857	ENSCHOG00000008741	-	55	59.857	Choloepus_hoffmanni
ENSPMAG00000000410	smg5	94	48.272	ENSCPBG00000025848	SMG5	100	47.671	Chrysemys_picta_bellii
ENSPMAG00000000410	smg5	100	49.003	ENSCANG00000029208	SMG5	99	48.795	Colobus_angolensis_palliatus
ENSPMAG00000000410	smg5	100	50.522	ENSCGRG00001006336	Smg5	99	50.674	Cricetulus_griseus_chok1gshd
ENSPMAG00000000410	smg5	98	50.532	ENSCGRG00000005111	Smg5	100	50.438	Cricetulus_griseus_crigri
ENSPMAG00000000410	smg5	92	61.483	ENSCSEG00000014220	smg5	99	49.042	Cynoglossus_semilaevis
ENSPMAG00000000410	smg5	99	46.257	ENSCVAG00000000529	smg5	98	46.124	Cyprinodon_variegatus
ENSPMAG00000000410	smg5	93	63.902	ENSDARG00000041481	smg5	85	64.090	Danio_rerio
ENSPMAG00000000410	smg5	99	48.895	ENSDNOG00000000051	SMG5	99	48.502	Dasypus_novemcinctus
ENSPMAG00000000410	smg5	100	50.427	ENSDORG00000010382	Smg5	99	50.193	Dipodomys_ordii
ENSPMAG00000000410	smg5	68	64.078	ENSETEG00000010336	SMG5	82	64.078	Echinops_telfairi
ENSPMAG00000000410	smg5	99	50.048	ENSEASG00005019122	SMG5	99	49.517	Equus_asinus_asinus
ENSPMAG00000000410	smg5	99	50.048	ENSECAG00000001389	SMG5	99	49.565	Equus_caballus
ENSPMAG00000000410	smg5	72	63.714	ENSEEUG00000012690	SMG5	75	63.324	Erinaceus_europaeus
ENSPMAG00000000410	smg5	99	49.238	ENSELUG00000012585	smg5	85	63.119	Esox_lucius
ENSPMAG00000000410	smg5	100	50.142	ENSFCAG00000011783	SMG5	99	50.532	Felis_catus
ENSPMAG00000000410	smg5	57	53.808	ENSFALG00000001166	-	99	51.667	Ficedula_albicollis
ENSPMAG00000000410	smg5	98	50.921	ENSFDAG00000017388	SMG5	100	50.195	Fukomys_damarensis
ENSPMAG00000000410	smg5	95	44.925	ENSFHEG00000013939	smg5	85	60.152	Fundulus_heteroclitus
ENSPMAG00000000410	smg5	99	47.392	ENSGMOG00000007310	smg5	87	61.072	Gadus_morhua
ENSPMAG00000000410	smg5	99	50.801	ENSGALG00000029918	-	98	49.338	Gallus_gallus
ENSPMAG00000000410	smg5	81	63.725	ENSGAFG00000021691	smg5	68	62.899	Gambusia_affinis
ENSPMAG00000000410	smg5	99	49.624	ENSGAGG00000016131	SMG5	98	48.351	Gopherus_agassizii
ENSPMAG00000000410	smg5	100	49.480	ENSGGOG00000010932	SMG5	99	49.517	Gorilla_gorilla
ENSPMAG00000000410	smg5	99	49.433	ENSHBUG00000008654	smg5	99	49.618	Haplochromis_burtoni
ENSPMAG00000000410	smg5	100	50.047	ENSHGLG00000019152	SMG5	99	50.530	Heterocephalus_glaber_female
ENSPMAG00000000410	smg5	90	49.947	ENSHGLG00100015948	SMG5	98	50.213	Heterocephalus_glaber_male
ENSPMAG00000000410	smg5	90	57.831	ENSHCOG00000010229	smg5	92	59.102	Hippocampus_comes
ENSPMAG00000000410	smg5	91	63.092	ENSIPUG00000006624	Smg5	85	62.594	Ictalurus_punctatus
ENSPMAG00000000410	smg5	100	50.143	ENSSTOG00000001780	SMG5	99	50.000	Ictidomys_tridecemlineatus
ENSPMAG00000000410	smg5	100	49.953	ENSJJAG00000022763	Smg5	99	49.567	Jaculus_jaculus
ENSPMAG00000000410	smg5	91	62.260	ENSKMAG00000014586	smg5	87	59.637	Kryptolebias_marmoratus
ENSPMAG00000000410	smg5	99	50.427	ENSLBEG00000002145	smg5	85	62.808	Labrus_bergylta
ENSPMAG00000000410	smg5	99	47.378	ENSLACG00000010521	SMG5	99	46.748	Latimeria_chalumnae
ENSPMAG00000000410	smg5	91	64.090	ENSLOCG00000008380	smg5	84	64.090	Lepisosteus_oculatus
ENSPMAG00000000410	smg5	99	49.711	ENSLAFG00000006241	SMG5	99	49.419	Loxodonta_africana
ENSPMAG00000000410	smg5	100	49.430	ENSMFAG00000045357	SMG5	99	49.324	Macaca_fascicularis
ENSPMAG00000000410	smg5	100	50.239	ENSMMUG00000000090	SMG5	99	49.466	Macaca_mulatta
ENSPMAG00000000410	smg5	100	49.525	ENSMNEG00000044425	SMG5	99	49.421	Macaca_nemestrina
ENSPMAG00000000410	smg5	100	45.265	ENSMLEG00000041192	SMG5	98	45.192	Mandrillus_leucophaeus
ENSPMAG00000000410	smg5	99	46.743	ENSMAMG00000010683	smg5	84	62.069	Mastacembelus_armatus
ENSPMAG00000000410	smg5	99	48.912	ENSMZEG00005015815	smg5	99	48.424	Maylandia_zebra
ENSPMAG00000000410	smg5	64	42.773	ENSMZEG00005016543	smg5	81	45.355	Maylandia_zebra
ENSPMAG00000000410	smg5	100	50.237	ENSMAUG00000010381	Smg5	99	50.386	Mesocricetus_auratus
ENSPMAG00000000410	smg5	100	49.668	ENSMICG00000002257	SMG5	99	49.471	Microcebus_murinus
ENSPMAG00000000410	smg5	100	50.381	ENSMOCG00000016590	Smg5	99	49.182	Microtus_ochrogaster
ENSPMAG00000000410	smg5	99	44.947	ENSMMOG00000017199	smg5	85	58.374	Mola_mola
ENSPMAG00000000410	smg5	88	49.733	ENSMODG00000016901	SMG5	97	49.449	Monodelphis_domestica
ENSPMAG00000000410	smg5	81	34.375	ENSMODG00000004532	-	85	37.195	Monodelphis_domestica
ENSPMAG00000000410	smg5	75	30.402	ENSMODG00000004735	-	87	30.693	Monodelphis_domestica
ENSPMAG00000000410	smg5	79	30.905	ENSMODG00000010675	-	90	31.156	Monodelphis_domestica
ENSPMAG00000000410	smg5	99	45.782	ENSMALG00000010375	smg5	84	59.360	Monopterus_albus
ENSPMAG00000000410	smg5	100	50.951	MGP_CAROLIEiJ_G0025163	Smg5	100	71.508	Mus_caroli
ENSPMAG00000000410	smg5	100	51.141	ENSMUSG00000001415	Smg5	99	71.508	Mus_musculus
ENSPMAG00000000410	smg5	100	50.474	MGP_PahariEiJ_G0026606	Smg5	100	71.508	Mus_pahari
ENSPMAG00000000410	smg5	100	51.141	MGP_SPRETEiJ_G0026104	Smg5	100	71.508	Mus_spretus
ENSPMAG00000000410	smg5	94	49.142	ENSMPUG00000004546	SMG5	100	49.082	Mustela_putorius_furo
ENSPMAG00000000410	smg5	99	50.337	ENSMLUG00000008518	SMG5	99	50.483	Myotis_lucifugus
ENSPMAG00000000410	smg5	100	49.433	ENSNGAG00000020706	Smg5	99	49.228	Nannospalax_galili
ENSPMAG00000000410	smg5	99	48.123	ENSNBRG00000004332	smg5	98	48.155	Neolamprologus_brichardi
ENSPMAG00000000410	smg5	100	49.430	ENSNLEG00000012439	SMG5	99	49.324	Nomascus_leucogenys
ENSPMAG00000000410	smg5	100	49.336	ENSMEUG00000012834	SMG5	99	49.278	Notamacropus_eugenii
ENSPMAG00000000410	smg5	100	49.240	ENSOPRG00000009152	SMG5	99	49.323	Ochotona_princeps
ENSPMAG00000000410	smg5	100	49.953	ENSODEG00000012237	SMG5	99	49.280	Octodon_degus
ENSPMAG00000000410	smg5	91	62.654	ENSONIG00000008632	smg5	84	62.162	Oreochromis_niloticus
ENSPMAG00000000410	smg5	98	49.806	ENSOCUG00000012886	SMG5	100	49.368	Oryctolagus_cuniculus
ENSPMAG00000000410	smg5	99	48.774	ENSORLG00020013127	smg5	98	48.549	Oryzias_latipes_hni
ENSPMAG00000000410	smg5	99	48.075	ENSORLG00015019014	smg5	98	48.409	Oryzias_latipes_hsok
ENSPMAG00000000410	smg5	59	45.426	ENSOMEG00000021330	smg5	63	57.568	Oryzias_melastigma
ENSPMAG00000000410	smg5	100	50.048	ENSOGAG00000004966	SMG5	99	49.711	Otolemur_garnettii
ENSPMAG00000000410	smg5	100	50.141	ENSOARG00000005778	SMG5	99	50.048	Ovis_aries
ENSPMAG00000000410	smg5	100	49.430	ENSPPAG00000011996	SMG5	99	49.324	Pan_paniscus
ENSPMAG00000000410	smg5	98	50.339	ENSPPRG00000011901	SMG5	100	50.243	Panthera_pardus
ENSPMAG00000000410	smg5	97	47.796	ENSPTIG00000007892	SMG5	98	47.198	Panthera_tigris_altaica
ENSPMAG00000000410	smg5	100	49.430	ENSPTRG00000023925	SMG5	99	49.324	Pan_troglodytes
ENSPMAG00000000410	smg5	90	62.963	ENSPTRG00000049282	-	99	49.324	Pan_troglodytes
ENSPMAG00000000410	smg5	100	49.525	ENSPANG00000011201	SMG5	99	49.421	Papio_anubis
ENSPMAG00000000410	smg5	99	48.362	ENSPKIG00000009402	smg5	85	63.342	Paramormyrops_kingsleyae
ENSPMAG00000000410	smg5	98	50.531	ENSPSIG00000015198	SMG5	100	49.370	Pelodiscus_sinensis
ENSPMAG00000000410	smg5	100	50.142	ENSPEMG00000001819	Smg5	99	50.097	Peromyscus_maniculatus_bairdii
ENSPMAG00000000410	smg5	100	51.374	ENSPCIG00000018938	SMG5	99	50.530	Phascolarctos_cinereus
ENSPMAG00000000410	smg5	91	62.830	ENSPFOG00000010191	smg5	89	59.864	Poecilia_formosa
ENSPMAG00000000410	smg5	91	62.830	ENSPLAG00000009332	smg5	89	60.544	Poecilia_latipinna
ENSPMAG00000000410	smg5	91	62.830	ENSPMEG00000014105	smg5	89	59.864	Poecilia_mexicana
ENSPMAG00000000410	smg5	91	62.830	ENSPREG00000017713	smg5	86	62.654	Poecilia_reticulata
ENSPMAG00000000410	smg5	100	49.525	ENSPPYG00000000723	SMG5	99	49.421	Pongo_abelii
ENSPMAG00000000410	smg5	75	59.657	ENSPCAG00000008412	SMG5	79	61.261	Procavia_capensis
ENSPMAG00000000410	smg5	100	50.000	ENSPCOG00000004741	SMG5	99	49.663	Propithecus_coquereli
ENSPMAG00000000410	smg5	99	46.654	ENSPVAG00000016748	SMG5	99	46.570	Pteropus_vampyrus
ENSPMAG00000000410	smg5	99	46.655	ENSPNYG00000013397	smg5	85	61.916	Pundamilia_nyererei
ENSPMAG00000000410	smg5	91	64.268	ENSPNAG00000028363	smg5	85	64.339	Pygocentrus_nattereri
ENSPMAG00000000410	smg5	100	50.760	ENSRNOG00000019590	Smg5	99	50.193	Rattus_norvegicus
ENSPMAG00000000410	smg5	100	49.477	ENSRBIG00000027428	SMG5	99	49.517	Rhinopithecus_bieti
ENSPMAG00000000410	smg5	100	49.477	ENSRROG00000030035	SMG5	99	49.517	Rhinopithecus_roxellana
ENSPMAG00000000410	smg5	100	49.953	ENSSBOG00000033339	SMG5	99	49.710	Saimiri_boliviensis_boliviensis
ENSPMAG00000000410	smg5	75	33.938	ENSSHAG00000000561	-	84	33.420	Sarcophilus_harrisii
ENSPMAG00000000410	smg5	55	33.679	ENSSHAG00000000935	-	93	33.161	Sarcophilus_harrisii
ENSPMAG00000000410	smg5	77	38.860	ENSSHAG00000009572	-	79	39.119	Sarcophilus_harrisii
ENSPMAG00000000410	smg5	98	50.960	ENSSHAG00000014163	SMG5	100	49.710	Sarcophilus_harrisii
ENSPMAG00000000410	smg5	92	62.927	ENSSFOG00015024175	smg5	85	63.591	Scleropages_formosus
ENSPMAG00000000410	smg5	99	46.522	ENSSMAG00000013059	smg5	84	62.162	Scophthalmus_maximus
ENSPMAG00000000410	smg5	99	46.167	ENSSDUG00000007122	smg5	84	61.314	Seriola_dumerili
ENSPMAG00000000410	smg5	99	46.101	ENSSLDG00000011418	smg5	84	61.916	Seriola_lalandi_dorsalis
ENSPMAG00000000410	smg5	84	50.172	ENSSARG00000012484	SMG5	93	50.172	Sorex_araneus
ENSPMAG00000000410	smg5	94	47.886	ENSSPUG00000002260	SMG5	100	46.238	Sphenodon_punctatus
ENSPMAG00000000410	smg5	91	62.439	ENSSPAG00000014266	smg5	97	48.842	Stegastes_partitus
ENSPMAG00000000410	smg5	99	50.336	ENSSSCG00000006490	-	97	58.049	Sus_scrofa
ENSPMAG00000000410	smg5	99	51.297	ENSTGUG00000003748	-	98	50.048	Taeniopygia_guttata
ENSPMAG00000000410	smg5	92	61.408	ENSTRUG00000012580	smg5	88	63.131	Takifugu_rubripes
ENSPMAG00000000410	smg5	99	49.715	ENSTNIG00000010303	smg5	99	48.769	Tetraodon_nigroviridis
ENSPMAG00000000410	smg5	58	64.706	ENSTBEG00000002777	SMG5	58	64.706	Tupaia_belangeri
ENSPMAG00000000410	smg5	100	46.819	ENSTTRG00000001401	SMG5	99	46.429	Tursiops_truncatus
ENSPMAG00000000410	smg5	99	50.768	ENSUAMG00000013721	SMG5	99	50.000	Ursus_americanus
ENSPMAG00000000410	smg5	98	49.365	ENSUMAG00000018041	SMG5	97	54.709	Ursus_maritimus
ENSPMAG00000000410	smg5	90	57.426	ENSVPAG00000009446	SMG5	93	57.426	Vicugna_pacos
ENSPMAG00000000410	smg5	100	50.615	ENSVVUG00000005887	SMG5	99	50.194	Vulpes_vulpes
ENSPMAG00000000410	smg5	77	44.164	ENSXETG00000033791	SMG5	99	42.457	Xenopus_tropicalis
ENSPMAG00000000410	smg5	77	61.187	ENSXCOG00000004379	smg5	64	62.654	Xiphophorus_couchianus
ENSPMAG00000000410	smg5	91	63.070	ENSXMAG00000013499	smg5	86	62.899	Xiphophorus_maculatus