EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000000462 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: -
Full Name: U6 snRNA biogenesis 1
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 4730 bases
Position: chrGL486462:19952-24681
Accession: ZDB-GENE-040801-197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000000514	HVSL	PF09749.9	6.3e-60	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000000515	-	714	-	ENSPMAP00000000514	237 (aa)	-	S4R5N4

Gene Model

Click here to download ENSPMAG00000000462's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000000462's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000000462	usb1	100	49.367	ENSG00000103005	USB1	100	50.463	Homo_sapiens
ENSPMAG00000000462	usb1	95	49.115	ENSAPOG00000011942	usb1	80	49.115	Acanthochromis_polyacanthus
ENSPMAG00000000462	usb1	95	51.770	ENSAMEG00000017205	USB1	83	51.770	Ailuropoda_melanoleuca
ENSPMAG00000000462	usb1	98	51.724	ENSACIG00000012234	usb1	85	51.724	Amphilophus_citrinellus
ENSPMAG00000000462	usb1	95	49.115	ENSAOCG00000014831	usb1	79	49.115	Amphiprion_ocellaris
ENSPMAG00000000462	usb1	95	49.115	ENSAPEG00000000296	usb1	79	49.115	Amphiprion_percula
ENSPMAG00000000462	usb1	95	50.000	ENSATEG00000009348	usb1	79	50.000	Anabas_testudineus
ENSPMAG00000000462	usb1	95	55.752	ENSAPLG00000002756	USB1	100	55.752	Anas_platyrhynchos
ENSPMAG00000000462	usb1	95	51.327	ENSACAG00000015481	USB1	99	51.327	Anolis_carolinensis
ENSPMAG00000000462	usb1	95	49.115	ENSANAG00000035640	USB1	85	49.115	Aotus_nancymaae
ENSPMAG00000000462	usb1	93	49.545	ENSACLG00000020586	usb1	77	49.772	Astatotilapia_calliptera
ENSPMAG00000000462	usb1	96	49.345	ENSAMXG00000040146	usb1	75	49.345	Astyanax_mexicanus
ENSPMAG00000000462	usb1	99	51.489	ENSBTAG00000015758	USB1	88	51.489	Bos_taurus
ENSPMAG00000000462	usb1	95	50.442	ENSCJAG00000011733	USB1	85	50.442	Callithrix_jacchus
ENSPMAG00000000462	usb1	95	51.556	ENSCAFG00000008556	USB1	60	51.556	Canis_familiaris
ENSPMAG00000000462	usb1	95	51.556	ENSCAFG00020009263	USB1	84	51.556	Canis_lupus_dingo
ENSPMAG00000000462	usb1	99	51.695	ENSCHIG00000024290	USB1	88	51.695	Capra_hircus
ENSPMAG00000000462	usb1	99	47.660	ENSTSYG00000006997	USB1	88	47.660	Carlito_syrichta
ENSPMAG00000000462	usb1	99	41.453	ENSCAPG00000009057	USB1	100	41.453	Cavia_aperea
ENSPMAG00000000462	usb1	100	49.789	ENSCPOG00000014325	USB1	88	49.789	Cavia_porcellus
ENSPMAG00000000462	usb1	95	50.000	ENSCCAG00000022132	USB1	85	50.000	Cebus_capucinus
ENSPMAG00000000462	usb1	100	48.945	ENSCATG00000032174	USB1	89	48.945	Cercocebus_atys
ENSPMAG00000000462	usb1	73	49.419	ENSCLAG00000007363	USB1	98	49.419	Chinchilla_lanigera
ENSPMAG00000000462	usb1	100	49.367	ENSCSAG00000004783	USB1	89	49.367	Chlorocebus_sabaeus
ENSPMAG00000000462	usb1	95	51.770	ENSCPBG00000026943	USB1	81	51.770	Chrysemys_picta_bellii
ENSPMAG00000000462	usb1	93	31.034	ENSCING00000011490	-	85	31.034	Ciona_intestinalis
ENSPMAG00000000462	usb1	100	48.945	ENSCANG00000037135	USB1	89	48.945	Colobus_angolensis_palliatus
ENSPMAG00000000462	usb1	95	50.885	ENSCGRG00001011243	USB1	84	50.885	Cricetulus_griseus_chok1gshd
ENSPMAG00000000462	usb1	95	50.885	ENSCGRG00000013252	USB1	84	50.885	Cricetulus_griseus_crigri
ENSPMAG00000000462	usb1	95	49.778	ENSCSEG00000013881	usb1	80	49.778	Cynoglossus_semilaevis
ENSPMAG00000000462	usb1	95	51.754	ENSCVAG00000009252	usb1	97	51.754	Cyprinodon_variegatus
ENSPMAG00000000462	usb1	95	47.345	ENSDARG00000003841	usb1	81	47.345	Danio_rerio
ENSPMAG00000000462	usb1	95	50.442	ENSDORG00000001888	Usb1	85	50.442	Dipodomys_ordii
ENSPMAG00000000462	usb1	83	38.049	FBgn0037713	CG16790	78	38.049	Drosophila_melanogaster
ENSPMAG00000000462	usb1	99	46.809	ENSETEG00000019682	USB1	87	46.809	Echinops_telfairi
ENSPMAG00000000462	usb1	95	51.339	ENSEBUG00000005889	usb1	78	51.339	Eptatretus_burgeri
ENSPMAG00000000462	usb1	99	52.119	ENSEASG00005005484	USB1	88	52.119	Equus_asinus_asinus
ENSPMAG00000000462	usb1	99	52.340	ENSECAG00000019493	USB1	80	52.340	Equus_caballus
ENSPMAG00000000462	usb1	73	44.767	ENSEEUG00000000154	USB1	65	44.767	Erinaceus_europaeus
ENSPMAG00000000462	usb1	99	45.957	ENSELUG00000010974	usb1	86	45.957	Esox_lucius
ENSPMAG00000000462	usb1	95	52.212	ENSFCAG00000002693	USB1	84	52.212	Felis_catus
ENSPMAG00000000462	usb1	95	53.982	ENSFALG00000006876	USB1	84	53.982	Ficedula_albicollis
ENSPMAG00000000462	usb1	100	48.101	ENSFDAG00000010052	USB1	88	48.101	Fukomys_damarensis
ENSPMAG00000000462	usb1	81	53.125	ENSFHEG00000012334	usb1	76	53.125	Fundulus_heteroclitus
ENSPMAG00000000462	usb1	95	46.222	ENSGMOG00000004228	usb1	99	46.222	Gadus_morhua
ENSPMAG00000000462	usb1	95	52.000	ENSGALG00000035604	USB1	88	53.070	Gallus_gallus
ENSPMAG00000000462	usb1	92	52.941	ENSGAFG00000021890	usb1	78	52.941	Gambusia_affinis
ENSPMAG00000000462	usb1	95	48.889	ENSGACG00000003257	usb1	80	48.889	Gasterosteus_aculeatus
ENSPMAG00000000462	usb1	95	52.212	ENSGAGG00000022572	USB1	82	52.212	Gopherus_agassizii
ENSPMAG00000000462	usb1	100	48.945	ENSGGOG00000017147	USB1	89	48.945	Gorilla_gorilla
ENSPMAG00000000462	usb1	95	48.673	ENSHBUG00000009823	usb1	79	48.889	Haplochromis_burtoni
ENSPMAG00000000462	usb1	99	50.000	ENSHGLG00000016078	USB1	86	50.000	Heterocephalus_glaber_female
ENSPMAG00000000462	usb1	99	50.000	ENSHGLG00100005562	USB1	86	50.000	Heterocephalus_glaber_male
ENSPMAG00000000462	usb1	91	48.148	ENSHCOG00000015633	usb1	86	48.444	Hippocampus_comes
ENSPMAG00000000462	usb1	96	51.528	ENSIPUG00000008601	usb1	78	51.528	Ictalurus_punctatus
ENSPMAG00000000462	usb1	99	50.638	ENSSTOG00000007548	USB1	85	50.638	Ictidomys_tridecemlineatus
ENSPMAG00000000462	usb1	95	51.327	ENSJJAG00000021859	Usb1	84	51.327	Jaculus_jaculus
ENSPMAG00000000462	usb1	95	51.556	ENSKMAG00000007200	usb1	78	51.556	Kryptolebias_marmoratus
ENSPMAG00000000462	usb1	86	49.261	ENSLBEG00000008452	usb1	65	49.741	Labrus_bergylta
ENSPMAG00000000462	usb1	89	53.052	ENSLACG00000000105	USB1	73	53.521	Latimeria_chalumnae
ENSPMAG00000000462	usb1	96	48.458	ENSLOCG00000000465	usb1	80	48.458	Lepisosteus_oculatus
ENSPMAG00000000462	usb1	100	43.882	ENSLAFG00000002267	USB1	87	44.304	Loxodonta_africana
ENSPMAG00000000462	usb1	100	48.945	ENSMFAG00000003926	USB1	89	48.945	Macaca_fascicularis
ENSPMAG00000000462	usb1	100	48.945	ENSMMUG00000022669	USB1	89	48.945	Macaca_mulatta
ENSPMAG00000000462	usb1	100	48.945	ENSMNEG00000042487	USB1	89	48.945	Macaca_nemestrina
ENSPMAG00000000462	usb1	100	48.945	ENSMLEG00000028756	USB1	89	48.945	Mandrillus_leucophaeus
ENSPMAG00000000462	usb1	95	51.556	ENSMAMG00000015092	usb1	80	51.556	Mastacembelus_armatus
ENSPMAG00000000462	usb1	93	49.545	ENSMZEG00005010008	usb1	77	49.772	Maylandia_zebra
ENSPMAG00000000462	usb1	99	48.374	ENSMAUG00000007832	Usb1	91	48.374	Mesocricetus_auratus
ENSPMAG00000000462	usb1	95	52.212	ENSMICG00000004900	USB1	88	51.064	Microcebus_murinus
ENSPMAG00000000462	usb1	99	48.374	ENSMOCG00000022647	Usb1	91	48.374	Microtus_ochrogaster
ENSPMAG00000000462	usb1	97	51.092	ENSMMOG00000000490	usb1	88	51.092	Mola_mola
ENSPMAG00000000462	usb1	93	53.846	ENSMODG00000014067	USB1	87	53.191	Monodelphis_domestica
ENSPMAG00000000462	usb1	99	50.213	ENSMALG00000005930	usb1	82	50.213	Monopterus_albus
ENSPMAG00000000462	usb1	99	48.374	MGP_CAROLIEiJ_G0031421	Usb1	100	48.696	Mus_caroli
ENSPMAG00000000462	usb1	100	50.633	ENSMUSG00000031792	Usb1	100	50.435	Mus_musculus
ENSPMAG00000000462	usb1	100	50.633	MGP_PahariEiJ_G0023019	Usb1	100	51.261	Mus_pahari
ENSPMAG00000000462	usb1	99	48.780	MGP_SPRETEiJ_G0032540	Usb1	91	48.780	Mus_spretus
ENSPMAG00000000462	usb1	95	52.212	ENSMPUG00000004684	USB1	80	52.212	Mustela_putorius_furo
ENSPMAG00000000462	usb1	95	54.185	ENSMLUG00000007400	USB1	97	54.185	Myotis_lucifugus
ENSPMAG00000000462	usb1	95	51.770	ENSNGAG00000009703	Usb1	83	51.770	Nannospalax_galili
ENSPMAG00000000462	usb1	95	45.175	ENSNBRG00000008747	usb1	99	47.907	Neolamprologus_brichardi
ENSPMAG00000000462	usb1	94	50.450	ENSNLEG00000003340	USB1	88	50.450	Nomascus_leucogenys
ENSPMAG00000000462	usb1	99	37.179	ENSOPRG00000011803	USB1	100	37.179	Ochotona_princeps
ENSPMAG00000000462	usb1	95	50.885	ENSODEG00000016214	USB1	84	50.885	Octodon_degus
ENSPMAG00000000462	usb1	95	48.889	ENSONIG00000011063	usb1	80	48.889	Oreochromis_niloticus
ENSPMAG00000000462	usb1	99	50.638	ENSOANG00000012118	USB1	97	50.638	Ornithorhynchus_anatinus
ENSPMAG00000000462	usb1	95	50.667	ENSORLG00000012479	usb1	82	50.667	Oryzias_latipes
ENSPMAG00000000462	usb1	95	49.778	ENSORLG00020018671	usb1	82	49.778	Oryzias_latipes_hni
ENSPMAG00000000462	usb1	95	50.667	ENSORLG00015009679	usb1	82	50.667	Oryzias_latipes_hsok
ENSPMAG00000000462	usb1	92	52.511	ENSOMEG00000012930	usb1	78	52.511	Oryzias_melastigma
ENSPMAG00000000462	usb1	99	45.532	ENSOGAG00000003273	USB1	87	45.532	Otolemur_garnettii
ENSPMAG00000000462	usb1	99	52.119	ENSOARG00000001107	USB1	89	52.119	Ovis_aries
ENSPMAG00000000462	usb1	100	49.367	ENSPPAG00000042137	USB1	89	49.367	Pan_paniscus
ENSPMAG00000000462	usb1	95	51.770	ENSPPRG00000024797	USB1	84	51.770	Panthera_pardus
ENSPMAG00000000462	usb1	95	51.770	ENSPTIG00000007506	USB1	84	51.770	Panthera_tigris_altaica
ENSPMAG00000000462	usb1	100	45.148	ENSPTRG00000008172	USB1	100	50.926	Pan_troglodytes
ENSPMAG00000000462	usb1	100	48.945	ENSPANG00000025138	USB1	89	48.945	Papio_anubis
ENSPMAG00000000462	usb1	93	51.364	ENSPKIG00000015109	usb1	73	51.364	Paramormyrops_kingsleyae
ENSPMAG00000000462	usb1	95	40.586	ENSPSIG00000004305	USB1	100	40.586	Pelodiscus_sinensis
ENSPMAG00000000462	usb1	96	47.577	ENSPMGG00000017725	usb1	86	47.577	Periophthalmus_magnuspinnatus
ENSPMAG00000000462	usb1	95	50.442	ENSPEMG00000016183	Usb1	82	50.442	Peromyscus_maniculatus_bairdii
ENSPMAG00000000462	usb1	92	52.968	ENSPFOG00000011130	usb1	78	52.968	Poecilia_formosa
ENSPMAG00000000462	usb1	92	52.968	ENSPLAG00000009820	usb1	78	52.968	Poecilia_latipinna
ENSPMAG00000000462	usb1	92	52.968	ENSPMEG00000006402	usb1	78	52.968	Poecilia_mexicana
ENSPMAG00000000462	usb1	81	54.688	ENSPREG00000001047	usb1	77	54.688	Poecilia_reticulata
ENSPMAG00000000462	usb1	94	47.321	ENSPPYG00000007401	USB1	88	47.321	Pongo_abelii
ENSPMAG00000000462	usb1	99	50.213	ENSPCOG00000022612	USB1	88	50.213	Propithecus_coquereli
ENSPMAG00000000462	usb1	97	52.814	ENSPVAG00000004613	USB1	88	52.814	Pteropus_vampyrus
ENSPMAG00000000462	usb1	95	49.333	ENSPNYG00000022262	usb1	79	49.333	Pundamilia_nyererei
ENSPMAG00000000462	usb1	97	51.092	ENSPNAG00000011736	usb1	77	51.092	Pygocentrus_nattereri
ENSPMAG00000000462	usb1	99	47.967	ENSRNOG00000013216	Usb1	91	47.967	Rattus_norvegicus
ENSPMAG00000000462	usb1	100	44.726	ENSRBIG00000044466	USB1	100	50.463	Rhinopithecus_bieti
ENSPMAG00000000462	usb1	100	49.367	ENSRROG00000029211	USB1	89	49.367	Rhinopithecus_roxellana
ENSPMAG00000000462	usb1	95	50.442	ENSSBOG00000029362	USB1	85	50.442	Saimiri_boliviensis_boliviensis
ENSPMAG00000000462	usb1	93	52.703	ENSSHAG00000006993	USB1	92	53.390	Sarcophilus_harrisii
ENSPMAG00000000462	usb1	94	52.018	ENSSFOG00015023663	usb1	69	52.018	Scleropages_formosus
ENSPMAG00000000462	usb1	95	47.699	ENSSMAG00000015834	usb1	80	47.699	Scophthalmus_maximus
ENSPMAG00000000462	usb1	95	52.000	ENSSDUG00000002949	usb1	83	52.000	Seriola_dumerili
ENSPMAG00000000462	usb1	95	52.000	ENSSLDG00000014174	usb1	79	52.000	Seriola_lalandi_dorsalis
ENSPMAG00000000462	usb1	91	51.852	ENSSPUG00000006741	USB1	100	51.852	Sphenodon_punctatus
ENSPMAG00000000462	usb1	95	48.889	ENSSPAG00000007484	usb1	78	48.889	Stegastes_partitus
ENSPMAG00000000462	usb1	99	50.847	ENSSSCG00000002807	USB1	87	50.847	Sus_scrofa
ENSPMAG00000000462	usb1	89	54.930	ENSTGUG00000004792	USB1	89	51.695	Taeniopygia_guttata
ENSPMAG00000000462	usb1	95	49.115	ENSTRUG00000021069	usb1	83	49.115	Takifugu_rubripes
ENSPMAG00000000462	usb1	97	46.725	ENSTNIG00000000626	usb1	85	46.725	Tetraodon_nigroviridis
ENSPMAG00000000462	usb1	99	38.462	ENSTBEG00000001507	USB1	100	38.462	Tupaia_belangeri
ENSPMAG00000000462	usb1	95	50.885	ENSUAMG00000016823	USB1	83	50.885	Ursus_americanus
ENSPMAG00000000462	usb1	91	50.463	ENSUMAG00000021369	USB1	100	50.463	Ursus_maritimus
ENSPMAG00000000462	usb1	95	51.556	ENSVVUG00000023700	USB1	86	51.556	Vulpes_vulpes
ENSPMAG00000000462	usb1	92	50.228	ENSXETG00000013795	usb1	89	50.446	Xenopus_tropicalis
ENSPMAG00000000462	usb1	92	53.394	ENSXMAG00000024687	usb1	63	54.822	Xiphophorus_maculatus