EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000000657 (Gene tree)
Gene ID: -
Gene Symbol: cpsf6
Alias: -
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 14830 bases
Position: chrGL501311:459835-474664
Accession: ZDB-GENE-030131-5277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000000720	RRM_1	PF00076.22	2.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000000721	-	1692	-	ENSPMAP00000000720	560 (aa)	-	S4R690

Gene Model

Click here to download ENSPMAG00000000657's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000000657's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000000657	cpsf6	55	71.084	ENSG00000149532	CPSF7	81	65.323	Homo_sapiens
ENSPMAG00000000657	cpsf6	57	84.615	ENSG00000111605	CPSF6	64	60.000	Homo_sapiens
ENSPMAG00000000657	cpsf6	62	41.951	ENSANAG00000024635	CPSF7	70	49.474	Aotus_nancymaae
ENSPMAG00000000657	cpsf6	60	83.465	ENSAMXG00000016745	CPSF6	82	70.833	Astyanax_mexicanus
ENSPMAG00000000657	cpsf6	61	54.688	ENSBTAG00000015263	CPSF7	68	54.651	Bos_taurus
ENSPMAG00000000657	cpsf6	64	54.167	ENSCJAG00000019282	CPSF7	70	65.600	Callithrix_jacchus
ENSPMAG00000000657	cpsf6	61	54.688	ENSCAFG00000016152	CPSF7	68	55.233	Canis_familiaris
ENSPMAG00000000657	cpsf6	61	54.688	ENSCAFG00020012753	CPSF7	68	55.233	Canis_lupus_dingo
ENSPMAG00000000657	cpsf6	61	54.688	ENSCHIG00000014655	CPSF7	68	54.651	Capra_hircus
ENSPMAG00000000657	cpsf6	61	54.688	ENSTSYG00000010138	-	68	55.233	Carlito_syrichta
ENSPMAG00000000657	cpsf6	57	84.615	ENSTSYG00000008591	CPSF6	59	73.810	Carlito_syrichta
ENSPMAG00000000657	cpsf6	52	56.522	ENSCAPG00000006384	CPSF7	70	54.651	Cavia_aperea
ENSPMAG00000000657	cpsf6	53	56.522	ENSCPOG00000009980	CPSF7	68	54.651	Cavia_porcellus
ENSPMAG00000000657	cpsf6	61	54.167	ENSCCAG00000032367	CPSF7	68	54.651	Cebus_capucinus
ENSPMAG00000000657	cpsf6	64	54.167	ENSCATG00000042801	CPSF7	74	54.651	Cercocebus_atys
ENSPMAG00000000657	cpsf6	57	85.385	ENSCATG00000039288	CPSF6	72	73.810	Cercocebus_atys
ENSPMAG00000000657	cpsf6	53	56.522	ENSCLAG00000003174	CPSF7	68	54.070	Chinchilla_lanigera
ENSPMAG00000000657	cpsf6	64	54.167	ENSCSAG00000006414	CPSF7	74	54.651	Chlorocebus_sabaeus
ENSPMAG00000000657	cpsf6	52	81.013	ENSCSAVG00000000161	-	57	69.421	Ciona_savignyi
ENSPMAG00000000657	cpsf6	57	85.385	ENSCANG00000037294	CPSF6	72	73.810	Colobus_angolensis_palliatus
ENSPMAG00000000657	cpsf6	61	55.208	ENSCGRG00001020382	Cpsf7	68	55.233	Cricetulus_griseus_chok1gshd
ENSPMAG00000000657	cpsf6	96	38.061	ENSCGRG00000017954	Cpsf7	74	55.233	Cricetulus_griseus_crigri
ENSPMAG00000000657	cpsf6	52	40.816	ENSCSEG00000001956	CPSF7	62	45.000	Cynoglossus_semilaevis
ENSPMAG00000000657	cpsf6	68	38.830	ENSCVAG00000007392	CPSF7	52	43.243	Cyprinodon_variegatus
ENSPMAG00000000657	cpsf6	61	54.688	ENSDNOG00000018517	CPSF7	70	66.400	Dasypus_novemcinctus
ENSPMAG00000000657	cpsf6	61	54.167	ENSETEG00000003765	CPSF7	68	52.406	Echinops_telfairi
ENSPMAG00000000657	cpsf6	54	55.405	ENSEASG00005008196	CPSF7	68	55.233	Equus_asinus_asinus
ENSPMAG00000000657	cpsf6	55	72.289	ENSECAG00000018521	CPSF7	77	66.400	Equus_caballus
ENSPMAG00000000657	cpsf6	62	65.354	ENSFCAG00000013677	CPSF7	77	66.400	Felis_catus
ENSPMAG00000000657	cpsf6	60	58.152	ENSFALG00000011927	CPSF7	72	54.301	Ficedula_albicollis
ENSPMAG00000000657	cpsf6	72	56.522	ENSFDAG00000003919	CPSF7	68	54.651	Fukomys_damarensis
ENSPMAG00000000657	cpsf6	50	84.553	ENSGMOG00000012951	cpsf6	50	85.366	Gadus_morhua
ENSPMAG00000000657	cpsf6	61	52.356	ENSGALG00000040962	CPSF7	64	53.226	Gallus_gallus
ENSPMAG00000000657	cpsf6	57	85.385	ENSGGOG00000008211	CPSF6	72	73.810	Gorilla_gorilla
ENSPMAG00000000657	cpsf6	55	56.522	ENSHGLG00000019090	-	74	54.651	Heterocephalus_glaber_female
ENSPMAG00000000657	cpsf6	55	56.522	ENSHGLG00100013933	-	74	54.651	Heterocephalus_glaber_male
ENSPMAG00000000657	cpsf6	61	54.688	ENSSTOG00000007708	CPSF7	68	55.233	Ictidomys_tridecemlineatus
ENSPMAG00000000657	cpsf6	64	54.359	ENSJJAG00000019390	Cpsf7	74	55.233	Jaculus_jaculus
ENSPMAG00000000657	cpsf6	51	41.958	ENSLBEG00000000947	CPSF7	69	41.379	Labrus_bergylta
ENSPMAG00000000657	cpsf6	68	40.909	ENSLACG00000005542	CPSF7	70	41.358	Latimeria_chalumnae
ENSPMAG00000000657	cpsf6	52	75.591	ENSLAFG00000030413	CPSF6	72	63.743	Loxodonta_africana
ENSPMAG00000000657	cpsf6	61	54.688	ENSLAFG00000032084	CPSF7	68	55.233	Loxodonta_africana
ENSPMAG00000000657	cpsf6	57	85.385	ENSMFAG00000045318	CPSF6	72	73.810	Macaca_fascicularis
ENSPMAG00000000657	cpsf6	61	54.167	ENSMFAG00000001401	CPSF7	68	54.651	Macaca_fascicularis
ENSPMAG00000000657	cpsf6	52	85.385	ENSMMUG00000002921	CPSF6	72	73.810	Macaca_mulatta
ENSPMAG00000000657	cpsf6	64	54.167	ENSMMUG00000015280	CPSF7	74	54.651	Macaca_mulatta
ENSPMAG00000000657	cpsf6	64	54.167	ENSMNEG00000029585	CPSF7	74	54.651	Macaca_nemestrina
ENSPMAG00000000657	cpsf6	57	84.615	ENSMNEG00000036311	CPSF6	72	73.810	Macaca_nemestrina
ENSPMAG00000000657	cpsf6	57	85.385	ENSMLEG00000003957	CPSF6	72	73.810	Mandrillus_leucophaeus
ENSPMAG00000000657	cpsf6	61	54.167	ENSMLEG00000031269	CPSF7	68	54.651	Mandrillus_leucophaeus
ENSPMAG00000000657	cpsf6	96	40.183	ENSMGAG00000004876	CPSF7	59	59.281	Meleagris_gallopavo
ENSPMAG00000000657	cpsf6	61	54.359	ENSMAUG00000013020	Cpsf7	68	55.233	Mesocricetus_auratus
ENSPMAG00000000657	cpsf6	57	84.615	ENSMICG00000007385	-	72	73.810	Microcebus_murinus
ENSPMAG00000000657	cpsf6	61	54.688	ENSMICG00000013788	CPSF7	68	55.233	Microcebus_murinus
ENSPMAG00000000657	cpsf6	61	54.359	ENSMOCG00000000072	Cpsf7	68	55.233	Microtus_ochrogaster
ENSPMAG00000000657	cpsf6	61	54.822	ENSMODG00000020364	CPSF7	69	55.367	Monodelphis_domestica
ENSPMAG00000000657	cpsf6	57	83.077	ENSMALG00000014908	cpsf6	68	73.214	Monopterus_albus
ENSPMAG00000000657	cpsf6	61	54.688	MGP_CAROLIEiJ_G0022690	Cpsf7	68	55.233	Mus_caroli
ENSPMAG00000000657	cpsf6	61	54.688	ENSMUSG00000034820	Cpsf7	68	55.233	Mus_musculus
ENSPMAG00000000657	cpsf6	61	54.688	MGP_PahariEiJ_G0014184	Cpsf7	68	55.233	Mus_pahari
ENSPMAG00000000657	cpsf6	61	54.688	MGP_SPRETEiJ_G0023604	Cpsf7	68	55.233	Mus_spretus
ENSPMAG00000000657	cpsf6	61	54.688	ENSMPUG00000014163	CPSF7	67	55.233	Mustela_putorius_furo
ENSPMAG00000000657	cpsf6	64	54.688	ENSMLUG00000013278	CPSF7	74	55.233	Myotis_lucifugus
ENSPMAG00000000657	cpsf6	64	77.707	ENSMLUG00000028728	-	74	80.620	Myotis_lucifugus
ENSPMAG00000000657	cpsf6	61	54.359	ENSNGAG00000005031	Cpsf7	68	55.233	Nannospalax_galili
ENSPMAG00000000657	cpsf6	61	54.167	ENSNLEG00000002529	CPSF7	62	54.651	Nomascus_leucogenys
ENSPMAG00000000657	cpsf6	57	84.615	ENSNLEG00000003798	CPSF6	72	73.810	Nomascus_leucogenys
ENSPMAG00000000657	cpsf6	68	49.569	ENSMEUG00000002261	CPSF7	78	51.142	Notamacropus_eugenii
ENSPMAG00000000657	cpsf6	56	85.385	ENSODEG00000004418	-	80	73.810	Octodon_degus
ENSPMAG00000000657	cpsf6	59	51.880	ENSODEG00000007109	-	80	50.633	Octodon_degus
ENSPMAG00000000657	cpsf6	53	52.482	ENSODEG00000002610	CPSF7	68	54.286	Octodon_degus
ENSPMAG00000000657	cpsf6	95	52.920	ENSOANG00000005944	CPSF6	55	86.992	Ornithorhynchus_anatinus
ENSPMAG00000000657	cpsf6	96	38.188	ENSOCUG00000024726	CPSF7	68	54.651	Oryctolagus_cuniculus
ENSPMAG00000000657	cpsf6	61	54.688	ENSOGAG00000027958	CPSF7	63	55.233	Otolemur_garnettii
ENSPMAG00000000657	cpsf6	61	54.359	ENSOARG00000012937	CPSF7	61	54.651	Ovis_aries
ENSPMAG00000000657	cpsf6	61	54.167	ENSPPAG00000028232	CPSF7	70	54.651	Pan_paniscus
ENSPMAG00000000657	cpsf6	65	52.000	ENSPPRG00000008538	CPSF7	78	50.685	Panthera_pardus
ENSPMAG00000000657	cpsf6	61	54.688	ENSPTIG00000021699	CPSF7	68	55.233	Panthera_tigris_altaica
ENSPMAG00000000657	cpsf6	57	85.385	ENSPTRG00000005205	CPSF6	72	73.810	Pan_troglodytes
ENSPMAG00000000657	cpsf6	61	54.167	ENSPTRG00000003742	CPSF7	70	54.651	Pan_troglodytes
ENSPMAG00000000657	cpsf6	73	86.992	ENSPANG00000011641	CPSF6	72	73.810	Papio_anubis
ENSPMAG00000000657	cpsf6	61	54.167	ENSPANG00000006037	CPSF7	68	54.651	Papio_anubis
ENSPMAG00000000657	cpsf6	56	46.629	ENSPKIG00000018054	CPSF7	74	44.681	Paramormyrops_kingsleyae
ENSPMAG00000000657	cpsf6	64	54.359	ENSPEMG00000012648	Cpsf7	74	55.233	Peromyscus_maniculatus_bairdii
ENSPMAG00000000657	cpsf6	61	54.822	ENSPCIG00000002551	CPSF7	70	63.043	Phascolarctos_cinereus
ENSPMAG00000000657	cpsf6	57	80.769	ENSPFOG00000006990	cpsf6	71	71.006	Poecilia_formosa
ENSPMAG00000000657	cpsf6	61	54.167	ENSPPYG00000003188	CPSF7	68	54.651	Pongo_abelii
ENSPMAG00000000657	cpsf6	61	54.688	ENSPCOG00000011976	CPSF7	68	55.233	Propithecus_coquereli
ENSPMAG00000000657	cpsf6	61	54.688	ENSPVAG00000010675	CPSF7	68	55.233	Pteropus_vampyrus
ENSPMAG00000000657	cpsf6	55	46.104	ENSPNAG00000015073	CPSF7	63	47.904	Pygocentrus_nattereri
ENSPMAG00000000657	cpsf6	64	53.333	ENSRNOG00000020668	Cpsf7	74	52.406	Rattus_norvegicus
ENSPMAG00000000657	cpsf6	62	64.567	ENSRBIG00000031429	CPSF7	77	65.600	Rhinopithecus_bieti
ENSPMAG00000000657	cpsf6	57	85.385	ENSRBIG00000042827	CPSF6	72	73.810	Rhinopithecus_bieti
ENSPMAG00000000657	cpsf6	61	54.167	ENSRROG00000045009	CPSF7	68	54.651	Rhinopithecus_roxellana
ENSPMAG00000000657	cpsf6	57	84.615	ENSRROG00000042758	CPSF6	72	73.810	Rhinopithecus_roxellana
ENSPMAG00000000657	cpsf6	61	54.167	ENSSBOG00000018431	CPSF7	68	54.651	Saimiri_boliviensis_boliviensis
ENSPMAG00000000657	cpsf6	57	85.385	ENSSBOG00000010652	CPSF6	73	73.810	Saimiri_boliviensis_boliviensis
ENSPMAG00000000657	cpsf6	68	49.569	ENSSHAG00000011964	CPSF7	78	51.142	Sarcophilus_harrisii
ENSPMAG00000000657	cpsf6	58	41.530	ENSSFOG00015010288	cpsf7	68	41.758	Scleropages_formosus
ENSPMAG00000000657	cpsf6	56	84.615	ENSSARG00000006743	CPSF6	57	73.810	Sorex_araneus
ENSPMAG00000000657	cpsf6	64	46.893	ENSSPUG00000019344	CPSF7	74	56.977	Sphenodon_punctatus
ENSPMAG00000000657	cpsf6	61	54.688	ENSSSCG00000013083	CPSF7	70	66.400	Sus_scrofa
ENSPMAG00000000657	cpsf6	60	54.787	ENSTTRG00000011085	CPSF7	70	55.233	Tursiops_truncatus
ENSPMAG00000000657	cpsf6	61	54.688	ENSUAMG00000017809	CPSF7	68	55.233	Ursus_americanus
ENSPMAG00000000657	cpsf6	64	54.688	ENSUMAG00000011825	CPSF7	74	55.233	Ursus_maritimus
ENSPMAG00000000657	cpsf6	61	54.688	ENSVVUG00000004939	CPSF7	70	66.400	Vulpes_vulpes
ENSPMAG00000000657	cpsf6	97	34.266	ENSXETG00000006715	cpsf7	63	48.810	Xenopus_tropicalis