EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000001030 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 18443 bases
Position: chrGL482256:352-18794
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000001155	ResIII	PF04851.15	1.1e-09	1	1
ENSPMAP00000001159	ResIII	PF04851.15	3.1e-09	1	1
ENSPMAP00000001159	BRK	PF07533.16	4.1e-16	1	1
ENSPMAP00000001155	BRK	PF07533.16	4.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000001164	-	2130	-	ENSPMAP00000001159	710 (aa)	-	S4R7H9
ENSPMAT00000001160	-	2307	-	ENSPMAP00000001155	769 (aa)	-	S4R7H5

Gene Model

Click here to download ENSPMAG00000001030's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000001030's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000001030	-	58	31.403	ENSPMAG00000002916	rad54b	53	31.320
ENSPMAG00000001030	-	57	43.341	ENSPMAG00000003871	-	73	43.341
ENSPMAG00000001030	-	59	49.660	ENSPMAG00000004376	hells	50	49.660
ENSPMAG00000001030	-	61	44.084	ENSPMAG00000008026	SMARCA5	63	44.084
ENSPMAG00000001030	-	60	31.681	ENSPMAG00000007719	rad54l	60	31.169

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000001030	-	100	81.399	ENSG00000080503	SMARCA2	99	98.000	Homo_sapiens
ENSPMAG00000001030	-	100	80.056	ENSAPOG00000002641	SMARCA2	50	76.709	Acanthochromis_polyacanthus
ENSPMAG00000001030	-	100	81.119	ENSAMEG00000012325	SMARCA2	55	81.346	Ailuropoda_melanoleuca
ENSPMAG00000001030	-	100	81.399	ENSCJAG00000010710	SMARCA2	50	81.399	Callithrix_jacchus
ENSPMAG00000001030	-	100	77.871	ENSCAFG00020026802	SMARCA2	56	77.203	Canis_lupus_dingo
ENSPMAG00000001030	-	100	81.399	ENSCATG00000031470	SMARCA2	50	80.000	Cercocebus_atys
ENSPMAG00000001030	-	100	77.247	ENSCVAG00000016571	SMARCA2	51	76.826	Cyprinodon_variegatus
ENSPMAG00000001030	-	100	78.310	ENSHCOG00000015348	-	51	77.606	Hippocampus_comes
ENSPMAG00000001030	-	100	81.399	ENSMFAG00000003814	SMARCA2	50	81.399	Macaca_fascicularis
ENSPMAG00000001030	-	100	81.399	ENSMNEG00000041069	SMARCA2	50	81.399	Macaca_nemestrina
ENSPMAG00000001030	-	100	81.399	ENSMLEG00000027418	SMARCA2	51	81.399	Mandrillus_leucophaeus
ENSPMAG00000001030	-	100	56.768	ENSMGAG00000005160	-	55	58.157	Meleagris_gallopavo
ENSPMAG00000001030	-	100	81.538	ENSMICG00000005162	SMARCA2	50	80.280	Microcebus_murinus
ENSPMAG00000001030	-	92	90.000	ENSMUSG00000024921	Smarca2	99	98.000	Mus_musculus
ENSPMAG00000001030	-	100	81.006	ENSMPUG00000005171	SMARCA2	52	81.487	Mustela_putorius_furo
ENSPMAG00000001030	-	100	74.543	ENSNBRG00000017998	SMARCA2	94	78.607	Neolamprologus_brichardi
ENSPMAG00000001030	-	100	80.000	ENSNLEG00000008575	SMARCA2	51	79.243	Nomascus_leucogenys
ENSPMAG00000001030	-	81	81.739	ENSOANG00000008299	-	73	81.109	Ornithorhynchus_anatinus
ENSPMAG00000001030	-	100	79.804	ENSORLG00000020820	SMARCA2	50	74.930	Oryzias_latipes
ENSPMAG00000001030	-	100	81.399	ENSPPAG00000038717	SMARCA2	50	81.399	Pan_paniscus
ENSPMAG00000001030	-	100	81.399	ENSPTRG00000051168	SMARCA2	50	81.399	Pan_troglodytes
ENSPMAG00000001030	-	93	84.746	ENSPCOG00000025709	SMARCA2	50	76.783	Propithecus_coquereli
ENSPMAG00000001030	-	100	81.399	ENSRBIG00000038618	SMARCA2	52	81.119	Rhinopithecus_bieti
ENSPMAG00000001030	-	100	81.399	ENSRROG00000019271	SMARCA2	50	81.399	Rhinopithecus_roxellana
ENSPMAG00000001030	-	100	81.346	ENSSFOG00015014870	SMARCA2	50	81.206	Scleropages_formosus
ENSPMAG00000001030	-	100	81.487	ENSUAMG00000024701	SMARCA2	52	81.487	Ursus_americanus
ENSPMAG00000001030	-	100	79.272	ENSVVUG00000004598	SMARCA2	58	78.601	Vulpes_vulpes