EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000001146 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: -
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 12342 bases
Position: chrGL501301:514723-527064
Accession: ZDB-GENE-041010-146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000001274	CMS1	PF14617.6	1.1e-33	1	1
ENSPMAP00000001274	DEAD	PF00270.29	3.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000001279	-	753	-	ENSPMAP00000001274	204 (aa)	-	S4R7U4

Gene Model

Click here to download ENSPMAG00000001146's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000001146's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000001146	cmss1	99	51.980	ENSG00000184220	CMSS1	99	45.679	Homo_sapiens
ENSPMAG00000001146	cmss1	99	51.232	ENSAPOG00000010604	cmss1	83	50.980	Acanthochromis_polyacanthus
ENSPMAG00000001146	cmss1	99	52.709	ENSAMEG00000004092	CMSS1	79	52.195	Ailuropoda_melanoleuca
ENSPMAG00000001146	cmss1	99	44.335	ENSACIG00000021854	cmss1	76	44.118	Amphilophus_citrinellus
ENSPMAG00000001146	cmss1	99	51.232	ENSAOCG00000013361	cmss1	71	50.980	Amphiprion_ocellaris
ENSPMAG00000001146	cmss1	99	51.232	ENSAPEG00000005829	cmss1	70	50.980	Amphiprion_percula
ENSPMAG00000001146	cmss1	100	51.471	ENSATEG00000008209	cmss1	75	51.471	Anabas_testudineus
ENSPMAG00000001146	cmss1	99	55.446	ENSAPLG00000010542	CMSS1	89	54.902	Anas_platyrhynchos
ENSPMAG00000001146	cmss1	99	53.960	ENSACAG00000011065	CMSS1	75	53.431	Anolis_carolinensis
ENSPMAG00000001146	cmss1	99	53.960	ENSANAG00000023565	CMSS1	78	53.431	Aotus_nancymaae
ENSPMAG00000001146	cmss1	99	50.246	ENSACLG00000027294	cmss1	70	50.000	Astatotilapia_calliptera
ENSPMAG00000001146	cmss1	98	52.500	ENSAMXG00000002046	cmss1	69	52.941	Astyanax_mexicanus
ENSPMAG00000001146	cmss1	99	52.970	ENSBTAG00000013663	CMSS1	74	52.451	Bos_taurus
ENSPMAG00000001146	cmss1	99	52.970	ENSCJAG00000000610	CMSS1	78	52.451	Callithrix_jacchus
ENSPMAG00000001146	cmss1	99	53.465	ENSCAFG00000009230	CMSS1	74	52.941	Canis_familiaris
ENSPMAG00000001146	cmss1	99	52.475	ENSCAFG00020024156	-	64	51.961	Canis_lupus_dingo
ENSPMAG00000001146	cmss1	99	53.465	ENSCAFG00020009464	-	74	52.941	Canis_lupus_dingo
ENSPMAG00000001146	cmss1	99	52.970	ENSCHIG00000013003	CMSS1	74	52.451	Capra_hircus
ENSPMAG00000001146	cmss1	99	52.970	ENSTSYG00000009266	CMSS1	78	52.451	Carlito_syrichta
ENSPMAG00000001146	cmss1	92	46.809	ENSCAPG00000013584	CMSS1	88	46.809	Cavia_aperea
ENSPMAG00000001146	cmss1	98	54.000	ENSCPOG00000014680	CMSS1	73	53.922	Cavia_porcellus
ENSPMAG00000001146	cmss1	99	53.465	ENSCCAG00000034685	CMSS1	78	52.941	Cebus_capucinus
ENSPMAG00000001146	cmss1	99	53.465	ENSCATG00000031980	CMSS1	78	52.941	Cercocebus_atys
ENSPMAG00000001146	cmss1	98	53.000	ENSCLAG00000011241	CMSS1	88	52.941	Chinchilla_lanigera
ENSPMAG00000001146	cmss1	99	53.465	ENSCSAG00000006024	CMSS1	83	52.941	Chlorocebus_sabaeus
ENSPMAG00000001146	cmss1	98	40.000	ENSCHOG00000012098	CMSS1	74	40.196	Choloepus_hoffmanni
ENSPMAG00000001146	cmss1	98	41.584	ENSCING00000014848	-	99	42.781	Ciona_intestinalis
ENSPMAG00000001146	cmss1	61	42.400	ENSCSAVG00000002309	-	98	42.400	Ciona_savignyi
ENSPMAG00000001146	cmss1	99	53.465	ENSCANG00000031337	CMSS1	78	52.941	Colobus_angolensis_palliatus
ENSPMAG00000001146	cmss1	99	52.475	ENSCGRG00001014305	Cmss1	73	51.961	Cricetulus_griseus_chok1gshd
ENSPMAG00000001146	cmss1	99	52.475	ENSCGRG00000006722	Cmss1	79	51.961	Cricetulus_griseus_crigri
ENSPMAG00000001146	cmss1	99	53.202	ENSCSEG00000004958	cmss1	69	52.941	Cynoglossus_semilaevis
ENSPMAG00000001146	cmss1	99	50.739	ENSCVAG00000005039	cmss1	71	50.490	Cyprinodon_variegatus
ENSPMAG00000001146	cmss1	99	51.724	ENSDARG00000112579	cmss1	70	51.471	Danio_rerio
ENSPMAG00000001146	cmss1	99	54.950	ENSDNOG00000040418	CMSS1	74	54.412	Dasypus_novemcinctus
ENSPMAG00000001146	cmss1	98	52.500	ENSDORG00000010461	Cmss1	73	52.451	Dipodomys_ordii
ENSPMAG00000001146	cmss1	66	48.507	ENSEBUG00000002156	-	98	48.507	Eptatretus_burgeri
ENSPMAG00000001146	cmss1	98	51.000	ENSEASG00005010966	CMSS1	93	50.980	Equus_asinus_asinus
ENSPMAG00000001146	cmss1	98	50.500	ENSECAG00000015662	CMSS1	90	50.490	Equus_caballus
ENSPMAG00000001146	cmss1	98	36.000	ENSEEUG00000007624	-	73	36.275	Erinaceus_europaeus
ENSPMAG00000001146	cmss1	99	53.202	ENSELUG00000019459	cmss1	68	52.941	Esox_lucius
ENSPMAG00000001146	cmss1	98	53.500	ENSFCAG00000044577	CMSS1	73	53.431	Felis_catus
ENSPMAG00000001146	cmss1	99	54.455	ENSFALG00000005816	CMSS1	86	53.922	Ficedula_albicollis
ENSPMAG00000001146	cmss1	99	52.475	ENSFDAG00000012577	CMSS1	89	51.961	Fukomys_damarensis
ENSPMAG00000001146	cmss1	99	52.217	ENSFHEG00000012008	cmss1	84	51.961	Fundulus_heteroclitus
ENSPMAG00000001146	cmss1	99	52.217	ENSGMOG00000016729	cmss1	73	51.961	Gadus_morhua
ENSPMAG00000001146	cmss1	99	53.960	ENSGALG00000015267	CMSS1	78	53.431	Gallus_gallus
ENSPMAG00000001146	cmss1	100	51.471	ENSGAFG00000021217	cmss1	77	51.471	Gambusia_affinis
ENSPMAG00000001146	cmss1	99	52.217	ENSGACG00000002798	cmss1	73	51.961	Gasterosteus_aculeatus
ENSPMAG00000001146	cmss1	99	54.950	ENSGAGG00000019861	CMSS1	79	54.412	Gopherus_agassizii
ENSPMAG00000001146	cmss1	99	52.475	ENSGGOG00000014125	CMSS1	78	51.961	Gorilla_gorilla
ENSPMAG00000001146	cmss1	99	50.246	ENSHBUG00000008431	cmss1	72	50.000	Haplochromis_burtoni
ENSPMAG00000001146	cmss1	98	52.500	ENSHGLG00000019481	CMSS1	83	52.451	Heterocephalus_glaber_female
ENSPMAG00000001146	cmss1	98	52.500	ENSHGLG00100010314	CMSS1	82	52.451	Heterocephalus_glaber_male
ENSPMAG00000001146	cmss1	99	52.709	ENSHCOG00000003222	cmss1	69	52.451	Hippocampus_comes
ENSPMAG00000001146	cmss1	99	51.232	ENSIPUG00000011591	cmss1	70	50.980	Ictalurus_punctatus
ENSPMAG00000001146	cmss1	99	53.465	ENSSTOG00000019366	CMSS1	73	52.941	Ictidomys_tridecemlineatus
ENSPMAG00000001146	cmss1	100	53.431	ENSJJAG00000014894	Cmss1	91	53.431	Jaculus_jaculus
ENSPMAG00000001146	cmss1	99	46.305	ENSKMAG00000002390	cmss1	82	46.078	Kryptolebias_marmoratus
ENSPMAG00000001146	cmss1	99	47.059	ENSLBEG00000006298	cmss1	83	46.829	Labrus_bergylta
ENSPMAG00000001146	cmss1	99	55.446	ENSLACG00000009293	CMSS1	89	54.902	Latimeria_chalumnae
ENSPMAG00000001146	cmss1	99	48.515	ENSLOCG00000009391	cmss1	71	48.039	Lepisosteus_oculatus
ENSPMAG00000001146	cmss1	98	54.000	ENSLAFG00000017509	CMSS1	89	53.922	Loxodonta_africana
ENSPMAG00000001146	cmss1	99	52.970	ENSMFAG00000045006	CMSS1	78	52.451	Macaca_fascicularis
ENSPMAG00000001146	cmss1	99	52.970	ENSMMUG00000002939	CMSS1	83	54.545	Macaca_mulatta
ENSPMAG00000001146	cmss1	99	52.970	ENSMNEG00000031315	CMSS1	78	52.451	Macaca_nemestrina
ENSPMAG00000001146	cmss1	99	53.465	ENSMLEG00000033660	CMSS1	78	52.941	Mandrillus_leucophaeus
ENSPMAG00000001146	cmss1	99	50.246	ENSMAMG00000017176	cmss1	70	50.000	Mastacembelus_armatus
ENSPMAG00000001146	cmss1	99	50.246	ENSMZEG00005021886	cmss1	70	50.000	Maylandia_zebra
ENSPMAG00000001146	cmss1	99	53.960	ENSMGAG00000014360	CMSS1	89	53.431	Meleagris_gallopavo
ENSPMAG00000001146	cmss1	99	39.604	ENSMAUG00000020609	Cmss1	67	39.216	Mesocricetus_auratus
ENSPMAG00000001146	cmss1	98	53.000	ENSMICG00000048977	CMSS1	78	52.941	Microcebus_murinus
ENSPMAG00000001146	cmss1	99	53.960	ENSMOCG00000021937	Cmss1	73	53.960	Microtus_ochrogaster
ENSPMAG00000001146	cmss1	99	50.739	ENSMMOG00000019794	cmss1	85	50.490	Mola_mola
ENSPMAG00000001146	cmss1	99	54.455	ENSMODG00000002275	CMSS1	77	53.922	Monodelphis_domestica
ENSPMAG00000001146	cmss1	99	51.724	ENSMALG00000004250	cmss1	70	51.471	Monopterus_albus
ENSPMAG00000001146	cmss1	99	53.465	MGP_CAROLIEiJ_G0020824	Cmss1	74	52.941	Mus_caroli
ENSPMAG00000001146	cmss1	99	53.465	ENSMUSG00000022748	Cmss1	74	52.941	Mus_musculus
ENSPMAG00000001146	cmss1	99	53.465	MGP_PahariEiJ_G0016524	Cmss1	74	52.941	Mus_pahari
ENSPMAG00000001146	cmss1	99	53.465	MGP_SPRETEiJ_G0021724	Cmss1	74	52.941	Mus_spretus
ENSPMAG00000001146	cmss1	98	52.764	ENSMPUG00000011324	CMSS1	78	52.709	Mustela_putorius_furo
ENSPMAG00000001146	cmss1	98	52.475	ENSMLUG00000001131	CMSS1	78	52.427	Myotis_lucifugus
ENSPMAG00000001146	cmss1	99	54.950	ENSNGAG00000020316	Cmss1	73	54.412	Nannospalax_galili
ENSPMAG00000001146	cmss1	99	50.246	ENSNBRG00000003095	cmss1	70	50.000	Neolamprologus_brichardi
ENSPMAG00000001146	cmss1	98	52.500	ENSNLEG00000034172	CMSS1	78	52.451	Nomascus_leucogenys
ENSPMAG00000001146	cmss1	99	43.069	ENSMEUG00000014505	CMSS1	89	42.647	Notamacropus_eugenii
ENSPMAG00000001146	cmss1	99	53.465	ENSOPRG00000002986	CMSS1	73	52.941	Ochotona_princeps
ENSPMAG00000001146	cmss1	99	44.554	ENSODEG00000009446	-	79	44.118	Octodon_degus
ENSPMAG00000001146	cmss1	99	52.970	ENSODEG00000003558	-	75	52.451	Octodon_degus
ENSPMAG00000001146	cmss1	98	53.500	ENSODEG00000005226	-	73	53.431	Octodon_degus
ENSPMAG00000001146	cmss1	99	47.030	ENSODEG00000001853	-	71	47.030	Octodon_degus
ENSPMAG00000001146	cmss1	99	50.246	ENSONIG00000006678	cmss1	78	50.000	Oreochromis_niloticus
ENSPMAG00000001146	cmss1	100	57.843	ENSOANG00000007529	CMSS1	88	57.843	Ornithorhynchus_anatinus
ENSPMAG00000001146	cmss1	99	54.950	ENSOCUG00000025366	CMSS1	74	54.412	Oryctolagus_cuniculus
ENSPMAG00000001146	cmss1	99	51.724	ENSORLG00000020340	cmss1	72	51.471	Oryzias_latipes
ENSPMAG00000001146	cmss1	100	46.078	ENSORLG00020012235	cmss1	86	46.078	Oryzias_latipes_hni
ENSPMAG00000001146	cmss1	99	47.291	ENSORLG00015015551	cmss1	76	47.059	Oryzias_latipes_hsok
ENSPMAG00000001146	cmss1	99	52.217	ENSOMEG00000012555	cmss1	71	51.961	Oryzias_melastigma
ENSPMAG00000001146	cmss1	99	52.475	ENSOGAG00000002045	CMSS1	89	51.961	Otolemur_garnettii
ENSPMAG00000001146	cmss1	99	52.709	ENSOARG00000017899	CMSS1	70	52.195	Ovis_aries
ENSPMAG00000001146	cmss1	99	52.475	ENSPPAG00000038515	CMSS1	75	51.961	Pan_paniscus
ENSPMAG00000001146	cmss1	98	53.500	ENSPPRG00000016767	CMSS1	73	53.431	Panthera_pardus
ENSPMAG00000001146	cmss1	98	53.000	ENSPTIG00000018274	CMSS1	73	52.941	Panthera_tigris_altaica
ENSPMAG00000001146	cmss1	99	52.475	ENSPTRG00000015157	CMSS1	83	51.961	Pan_troglodytes
ENSPMAG00000001146	cmss1	99	53.465	ENSPANG00000019980	CMSS1	81	52.941	Papio_anubis
ENSPMAG00000001146	cmss1	99	55.172	ENSPKIG00000012609	cmss1	75	54.902	Paramormyrops_kingsleyae
ENSPMAG00000001146	cmss1	99	55.446	ENSPSIG00000003849	CMSS1	89	54.902	Pelodiscus_sinensis
ENSPMAG00000001146	cmss1	99	50.980	ENSPMGG00000010286	cmss1	88	50.732	Periophthalmus_magnuspinnatus
ENSPMAG00000001146	cmss1	99	53.960	ENSPEMG00000016384	Cmss1	73	53.431	Peromyscus_maniculatus_bairdii
ENSPMAG00000001146	cmss1	99	56.436	ENSPCIG00000015656	CMSS1	77	55.882	Phascolarctos_cinereus
ENSPMAG00000001146	cmss1	99	50.739	ENSPFOG00000016849	cmss1	71	50.490	Poecilia_formosa
ENSPMAG00000001146	cmss1	99	50.246	ENSPLAG00000008323	cmss1	71	50.000	Poecilia_latipinna
ENSPMAG00000001146	cmss1	99	50.739	ENSPMEG00000021020	cmss1	71	50.490	Poecilia_mexicana
ENSPMAG00000001146	cmss1	99	50.739	ENSPREG00000007618	cmss1	69	50.490	Poecilia_reticulata
ENSPMAG00000001146	cmss1	99	52.475	ENSPPYG00000013606	CMSS1	75	51.961	Pongo_abelii
ENSPMAG00000001146	cmss1	98	53.500	ENSPCOG00000020035	CMSS1	78	53.431	Propithecus_coquereli
ENSPMAG00000001146	cmss1	98	43.000	ENSPVAG00000017031	CMSS1	73	43.137	Pteropus_vampyrus
ENSPMAG00000001146	cmss1	87	53.107	ENSPNYG00000013428	cmss1	65	52.809	Pundamilia_nyererei
ENSPMAG00000001146	cmss1	99	53.202	ENSPNAG00000007912	cmss1	69	52.941	Pygocentrus_nattereri
ENSPMAG00000001146	cmss1	99	53.465	ENSRNOG00000027888	Cmss1	79	52.941	Rattus_norvegicus
ENSPMAG00000001146	cmss1	99	52.970	ENSRBIG00000037931	CMSS1	78	52.451	Rhinopithecus_bieti
ENSPMAG00000001146	cmss1	99	52.970	ENSRROG00000042910	CMSS1	78	52.451	Rhinopithecus_roxellana
ENSPMAG00000001146	cmss1	99	52.970	ENSSBOG00000030980	CMSS1	78	52.451	Saimiri_boliviensis_boliviensis
ENSPMAG00000001146	cmss1	99	56.436	ENSSHAG00000009321	CMSS1	81	55.882	Sarcophilus_harrisii
ENSPMAG00000001146	cmss1	99	56.650	ENSSFOG00015001509	cmss1	70	56.373	Scleropages_formosus
ENSPMAG00000001146	cmss1	99	51.724	ENSSMAG00000001653	cmss1	70	51.471	Scophthalmus_maximus
ENSPMAG00000001146	cmss1	99	50.739	ENSSDUG00000007719	cmss1	71	50.490	Seriola_dumerili
ENSPMAG00000001146	cmss1	100	50.980	ENSSLDG00000012300	cmss1	69	50.980	Seriola_lalandi_dorsalis
ENSPMAG00000001146	cmss1	99	42.079	ENSSARG00000003584	CMSS1	73	41.667	Sorex_araneus
ENSPMAG00000001146	cmss1	99	55.446	ENSSPUG00000003865	CMSS1	90	54.902	Sphenodon_punctatus
ENSPMAG00000001146	cmss1	100	51.471	ENSSPAG00000019182	cmss1	63	51.471	Stegastes_partitus
ENSPMAG00000001146	cmss1	98	52.500	ENSSSCG00000011970	CMSS1	73	52.451	Sus_scrofa
ENSPMAG00000001146	cmss1	99	53.960	ENSTGUG00000013635	CMSS1	89	53.431	Taeniopygia_guttata
ENSPMAG00000001146	cmss1	99	50.739	ENSTRUG00000015265	cmss1	72	50.490	Takifugu_rubripes
ENSPMAG00000001146	cmss1	99	44.828	ENSTNIG00000002880	cmss1	74	44.608	Tetraodon_nigroviridis
ENSPMAG00000001146	cmss1	99	38.119	ENSTBEG00000016722	CMSS1	73	37.745	Tupaia_belangeri
ENSPMAG00000001146	cmss1	99	52.475	ENSTTRG00000001562	CMSS1	73	51.961	Tursiops_truncatus
ENSPMAG00000001146	cmss1	99	53.465	ENSUAMG00000024209	CMSS1	91	52.941	Ursus_americanus
ENSPMAG00000001146	cmss1	99	53.465	ENSUMAG00000001983	CMSS1	79	52.941	Ursus_maritimus
ENSPMAG00000001146	cmss1	78	53.125	ENSVPAG00000000263	CMSS1	57	53.125	Vicugna_pacos
ENSPMAG00000001146	cmss1	99	53.465	ENSVVUG00000007776	-	80	52.941	Vulpes_vulpes
ENSPMAG00000001146	cmss1	98	53.000	ENSVVUG00000021647	-	83	52.941	Vulpes_vulpes
ENSPMAG00000001146	cmss1	99	53.202	ENSXETG00000011858	cmss1	73	52.941	Xenopus_tropicalis
ENSPMAG00000001146	cmss1	100	50.980	ENSXCOG00000018724	cmss1	70	50.980	Xiphophorus_couchianus
ENSPMAG00000001146	cmss1	100	50.980	ENSXMAG00000011243	cmss1	76	50.980	Xiphophorus_maculatus