EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000001206 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 28769 bases
Position: chrGL477219:27869-56637
Accession: ZDB-GENE-040426-2836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000001338	UPF1_Zn_bind	PF09416.10	9.1e-75	1	1
ENSPMAP00000001338	ResIII	PF04851.15	1.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000001344	-	3321	-	ENSPMAP00000001338	1106 (aa)	-	S4R808

Gene Model

Click here to download ENSPMAG00000001206's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000001206's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000001206	upf1	100	86.436	ENSG00000005007	UPF1	100	86.999	Homo_sapiens
ENSPMAG00000001206	upf1	100	86.859	ENSAPOG00000023773	upf1	100	86.999	Acanthochromis_polyacanthus
ENSPMAG00000001206	upf1	100	87.207	ENSAPOG00000010916	-	100	87.658	Acanthochromis_polyacanthus
ENSPMAG00000001206	upf1	100	86.602	ENSAMEG00000011474	UPF1	100	86.957	Ailuropoda_melanoleuca
ENSPMAG00000001206	upf1	100	87.624	ENSACIG00000019949	upf1	100	87.624	Amphilophus_citrinellus
ENSPMAG00000001206	upf1	93	89.632	ENSACIG00000010985	-	100	89.632	Amphilophus_citrinellus
ENSPMAG00000001206	upf1	100	87.207	ENSAOCG00000006352	-	100	87.658	Amphiprion_ocellaris
ENSPMAG00000001206	upf1	100	86.438	ENSAOCG00000018519	upf1	100	86.910	Amphiprion_ocellaris
ENSPMAG00000001206	upf1	100	87.207	ENSAPEG00000006292	-	100	87.658	Amphiprion_percula
ENSPMAG00000001206	upf1	100	86.438	ENSAPEG00000016344	upf1	100	86.910	Amphiprion_percula
ENSPMAG00000001206	upf1	100	87.748	ENSATEG00000016606	-	100	87.748	Anabas_testudineus
ENSPMAG00000001206	upf1	100	85.511	ENSATEG00000017867	upf1	100	86.756	Anabas_testudineus
ENSPMAG00000001206	upf1	95	89.005	ENSAPLG00000009175	UPF1	100	89.005	Anas_platyrhynchos
ENSPMAG00000001206	upf1	97	85.899	ENSANAG00000024107	UPF1	98	85.899	Aotus_nancymaae
ENSPMAG00000001206	upf1	100	87.838	ENSACLG00000022630	-	100	87.838	Astatotilapia_calliptera
ENSPMAG00000001206	upf1	100	87.173	ENSACLG00000007181	upf1	100	87.173	Astatotilapia_calliptera
ENSPMAG00000001206	upf1	100	87.556	ENSAMXG00000042187	upf1	100	88.018	Astyanax_mexicanus
ENSPMAG00000001206	upf1	100	86.572	ENSBTAG00000020922	UPF1	100	86.837	Bos_taurus
ENSPMAG00000001206	upf1	91	50.982	WBGene00004880	smg-2	84	53.746	Caenorhabditis_elegans
ENSPMAG00000001206	upf1	100	86.167	ENSCJAG00000019627	UPF1	100	86.726	Callithrix_jacchus
ENSPMAG00000001206	upf1	100	86.344	ENSCAFG00000014578	UPF1	100	86.608	Canis_familiaris
ENSPMAG00000001206	upf1	100	86.613	ENSCAFG00020012347	UPF1	100	86.879	Canis_lupus_dingo
ENSPMAG00000001206	upf1	100	86.844	ENSCHIG00000011018	UPF1	100	87.134	Capra_hircus
ENSPMAG00000001206	upf1	94	89.163	ENSTSYG00000008877	UPF1	99	88.011	Carlito_syrichta
ENSPMAG00000001206	upf1	95	88.158	ENSCAPG00000005758	UPF1	96	88.158	Cavia_aperea
ENSPMAG00000001206	upf1	100	87.377	ENSCPOG00000025463	UPF1	100	87.377	Cavia_porcellus
ENSPMAG00000001206	upf1	100	86.779	ENSCCAG00000032175	UPF1	100	87.344	Cebus_capucinus
ENSPMAG00000001206	upf1	94	89.207	ENSCATG00000040306	UPF1	98	88.731	Cercocebus_atys
ENSPMAG00000001206	upf1	94	89.068	ENSCLAG00000004037	UPF1	99	89.068	Chinchilla_lanigera
ENSPMAG00000001206	upf1	100	86.436	ENSCSAG00000005276	UPF1	100	86.999	Chlorocebus_sabaeus
ENSPMAG00000001206	upf1	100	87.209	ENSCPBG00000012513	UPF1	100	87.388	Chrysemys_picta_bellii
ENSPMAG00000001206	upf1	77	78.125	ENSCING00000021399	-	99	78.241	Ciona_intestinalis
ENSPMAG00000001206	upf1	99	72.029	ENSCSAVG00000006533	-	99	72.321	Ciona_savignyi
ENSPMAG00000001206	upf1	94	89.068	ENSCANG00000029819	UPF1	99	88.131	Colobus_angolensis_palliatus
ENSPMAG00000001206	upf1	100	86.821	ENSCGRG00001021067	Upf1	100	87.388	Cricetulus_griseus_chok1gshd
ENSPMAG00000001206	upf1	95	88.263	ENSCGRG00000013480	Upf1	99	88.263	Cricetulus_griseus_crigri
ENSPMAG00000001206	upf1	100	87.715	ENSCSEG00000016159	-	100	87.715	Cynoglossus_semilaevis
ENSPMAG00000001206	upf1	100	82.310	ENSCSEG00000017239	upf1	100	82.581	Cynoglossus_semilaevis
ENSPMAG00000001206	upf1	100	87.838	ENSCVAG00000010561	upf1	100	87.838	Cyprinodon_variegatus
ENSPMAG00000001206	upf1	100	87.466	ENSDARG00000016302	upf1	100	88.018	Danio_rerio
ENSPMAG00000001206	upf1	94	86.787	ENSDORG00000009984	Upf1	95	86.787	Dipodomys_ordii
ENSPMAG00000001206	upf1	98	72.622	FBgn0030354	Upf1	79	72.622	Drosophila_melanogaster
ENSPMAG00000001206	upf1	55	89.638	ENSEBUG00000010069	upf1	96	90.296	Eptatretus_burgeri
ENSPMAG00000001206	upf1	100	86.844	ENSEASG00005006549	UPF1	100	87.111	Equus_asinus_asinus
ENSPMAG00000001206	upf1	100	86.844	ENSECAG00000010639	UPF1	100	87.111	Equus_caballus
ENSPMAG00000001206	upf1	100	86.984	ENSELUG00000020917	upf1	100	87.163	Esox_lucius
ENSPMAG00000001206	upf1	100	86.649	ENSELUG00000012916	-	100	87.085	Esox_lucius
ENSPMAG00000001206	upf1	100	86.344	ENSFCAG00000009757	UPF1	100	86.608	Felis_catus
ENSPMAG00000001206	upf1	95	88.868	ENSFALG00000009312	UPF1	97	88.660	Ficedula_albicollis
ENSPMAG00000001206	upf1	96	87.616	ENSFDAG00000014816	UPF1	99	88.973	Fukomys_damarensis
ENSPMAG00000001206	upf1	86	88.889	ENSFHEG00000016276	-	96	88.889	Fundulus_heteroclitus
ENSPMAG00000001206	upf1	100	85.228	ENSFHEG00000006428	upf1	100	85.192	Fundulus_heteroclitus
ENSPMAG00000001206	upf1	100	87.534	ENSGMOG00000007541	upf1	100	87.623	Gadus_morhua
ENSPMAG00000001206	upf1	100	86.898	ENSGALG00000003220	UPF1	100	87.255	Gallus_gallus
ENSPMAG00000001206	upf1	63	91.977	ENSGAFG00000015443	-	88	90.210	Gambusia_affinis
ENSPMAG00000001206	upf1	100	87.805	ENSGAFG00000004831	upf1	100	87.805	Gambusia_affinis
ENSPMAG00000001206	upf1	100	87.511	ENSGAGG00000022217	UPF1	100	87.871	Gopherus_agassizii
ENSPMAG00000001206	upf1	94	89.378	ENSGGOG00000002608	UPF1	99	89.378	Gorilla_gorilla
ENSPMAG00000001206	upf1	89	87.342	ENSHBUG00000014694	upf1	100	87.342	Haplochromis_burtoni
ENSPMAG00000001206	upf1	89	89.744	ENSHBUG00000008939	upf1	99	89.744	Haplochromis_burtoni
ENSPMAG00000001206	upf1	100	86.079	ENSHGLG00000010900	UPF1	100	86.649	Heterocephalus_glaber_female
ENSPMAG00000001206	upf1	96	85.596	ENSHGLG00100005904	UPF1	99	85.596	Heterocephalus_glaber_male
ENSPMAG00000001206	upf1	100	87.004	ENSHCOG00000008918	upf1	100	88.910	Hippocampus_comes
ENSPMAG00000001206	upf1	100	87.556	ENSIPUG00000005108	UPF1	100	88.007	Ictalurus_punctatus
ENSPMAG00000001206	upf1	100	86.549	ENSSTOG00000009196	UPF1	100	87.111	Ictidomys_tridecemlineatus
ENSPMAG00000001206	upf1	100	86.613	ENSJJAG00000023151	Upf1	100	87.022	Jaculus_jaculus
ENSPMAG00000001206	upf1	100	87.477	ENSKMAG00000004962	upf1	100	87.477	Kryptolebias_marmoratus
ENSPMAG00000001206	upf1	100	87.207	ENSLBEG00000027848	-	100	87.658	Labrus_bergylta
ENSPMAG00000001206	upf1	100	85.574	ENSLBEG00000014862	upf1	100	86.465	Labrus_bergylta
ENSPMAG00000001206	upf1	63	90.272	ENSLACG00000008482	UPF1	100	90.272	Latimeria_chalumnae
ENSPMAG00000001206	upf1	100	88.368	ENSLOCG00000002072	upf1	100	88.368	Lepisosteus_oculatus
ENSPMAG00000001206	upf1	100	86.408	ENSLAFG00000014963	UPF1	100	86.537	Loxodonta_africana
ENSPMAG00000001206	upf1	100	86.779	ENSMFAG00000037748	UPF1	100	87.344	Macaca_fascicularis
ENSPMAG00000001206	upf1	100	86.549	ENSMMUG00000023286	UPF1	100	87.111	Macaca_mulatta
ENSPMAG00000001206	upf1	100	86.779	ENSMNEG00000000046	UPF1	100	87.344	Macaca_nemestrina
ENSPMAG00000001206	upf1	94	89.068	ENSMLEG00000028404	UPF1	99	89.068	Mandrillus_leucophaeus
ENSPMAG00000001206	upf1	100	85.600	ENSMAMG00000006229	upf1	100	86.667	Mastacembelus_armatus
ENSPMAG00000001206	upf1	100	87.556	ENSMAMG00000006231	-	100	87.748	Mastacembelus_armatus
ENSPMAG00000001206	upf1	100	87.838	ENSMZEG00005016386	-	100	87.838	Maylandia_zebra
ENSPMAG00000001206	upf1	100	86.161	ENSMZEG00005003489	upf1	100	86.786	Maylandia_zebra
ENSPMAG00000001206	upf1	94	88.604	ENSMGAG00000004745	UPF1	100	88.604	Meleagris_gallopavo
ENSPMAG00000001206	upf1	94	89.068	ENSMAUG00000011398	Upf1	95	89.068	Mesocricetus_auratus
ENSPMAG00000001206	upf1	100	86.525	ENSMICG00000001659	UPF1	100	87.088	Microcebus_murinus
ENSPMAG00000001206	upf1	100	86.460	ENSMOCG00000005699	Upf1	100	86.814	Microtus_ochrogaster
ENSPMAG00000001206	upf1	95	86.762	ENSMMOG00000007537	-	99	87.238	Mola_mola
ENSPMAG00000001206	upf1	100	86.799	ENSMMOG00000007881	upf1	100	87.173	Mola_mola
ENSPMAG00000001206	upf1	100	86.116	ENSMODG00000003689	UPF1	100	86.380	Monodelphis_domestica
ENSPMAG00000001206	upf1	100	86.528	ENSMALG00000000144	upf1	100	86.618	Monopterus_albus
ENSPMAG00000001206	upf1	100	86.086	ENSMALG00000018100	-	100	86.535	Monopterus_albus
ENSPMAG00000001206	upf1	100	86.732	MGP_CAROLIEiJ_G0031142	Upf1	100	87.299	Mus_caroli
ENSPMAG00000001206	upf1	100	86.732	ENSMUSG00000058301	Upf1	100	87.299	Mus_musculus
ENSPMAG00000001206	upf1	100	86.732	MGP_PahariEiJ_G0021607	Upf1	100	87.299	Mus_pahari
ENSPMAG00000001206	upf1	100	86.732	MGP_SPRETEiJ_G0032260	Upf1	100	87.299	Mus_spretus
ENSPMAG00000001206	upf1	100	86.613	ENSMPUG00000015516	UPF1	100	86.879	Mustela_putorius_furo
ENSPMAG00000001206	upf1	99	86.566	ENSMLUG00000012122	UPF1	99	86.833	Myotis_lucifugus
ENSPMAG00000001206	upf1	100	86.320	ENSNGAG00000024107	Upf1	100	86.879	Nannospalax_galili
ENSPMAG00000001206	upf1	100	84.930	ENSNBRG00000022069	-	100	88.867	Neolamprologus_brichardi
ENSPMAG00000001206	upf1	100	85.366	ENSNBRG00000000670	upf1	100	85.366	Neolamprologus_brichardi
ENSPMAG00000001206	upf1	94	83.745	ENSNLEG00000006062	UPF1	99	83.745	Nomascus_leucogenys
ENSPMAG00000001206	upf1	83	84.344	ENSMEUG00000014146	-	83	84.344	Notamacropus_eugenii
ENSPMAG00000001206	upf1	94	83.349	ENSOPRG00000014018	UPF1	99	83.349	Ochotona_princeps
ENSPMAG00000001206	upf1	100	87.265	ENSODEG00000012426	UPF1	100	87.478	Octodon_degus
ENSPMAG00000001206	upf1	100	86.351	ENSONIG00000010452	upf1	100	86.976	Oreochromis_niloticus
ENSPMAG00000001206	upf1	100	87.928	ENSONIG00000012729	-	100	87.928	Oreochromis_niloticus
ENSPMAG00000001206	upf1	100	86.749	ENSOANG00000004568	UPF1	100	87.168	Ornithorhynchus_anatinus
ENSPMAG00000001206	upf1	100	87.117	ENSORLG00000008453	upf1	100	87.117	Oryzias_latipes
ENSPMAG00000001206	upf1	100	87.117	ENSORLG00020014758	upf1	100	87.117	Oryzias_latipes_hni
ENSPMAG00000001206	upf1	100	87.117	ENSORLG00015010165	upf1	100	87.117	Oryzias_latipes_hsok
ENSPMAG00000001206	upf1	100	87.477	ENSOMEG00000003665	upf1	100	87.477	Oryzias_melastigma
ENSPMAG00000001206	upf1	100	86.525	ENSOGAG00000012866	UPF1	100	87.088	Otolemur_garnettii
ENSPMAG00000001206	upf1	96	85.649	ENSOARG00000010739	UPF1	100	85.833	Ovis_aries
ENSPMAG00000001206	upf1	95	88.763	ENSPPAG00000043884	UPF1	97	88.224	Pan_paniscus
ENSPMAG00000001206	upf1	100	86.344	ENSPPRG00000023470	UPF1	100	86.608	Panthera_pardus
ENSPMAG00000001206	upf1	94	87.202	ENSPTIG00000010159	UPF1	99	87.202	Panthera_tigris_altaica
ENSPMAG00000001206	upf1	100	86.779	ENSPTRG00000010721	UPF1	100	87.344	Pan_troglodytes
ENSPMAG00000001206	upf1	100	86.779	ENSPANG00000008847	UPF1	100	87.344	Papio_anubis
ENSPMAG00000001206	upf1	92	88.109	ENSPKIG00000006069	upf1	98	88.109	Paramormyrops_kingsleyae
ENSPMAG00000001206	upf1	69	88.642	ENSPSIG00000009491	UPF1	100	88.642	Pelodiscus_sinensis
ENSPMAG00000001206	upf1	100	86.331	ENSPMGG00000017327	upf1	100	86.511	Periophthalmus_magnuspinnatus
ENSPMAG00000001206	upf1	100	86.549	ENSPEMG00000001085	Upf1	100	87.111	Peromyscus_maniculatus_bairdii
ENSPMAG00000001206	upf1	100	86.868	ENSPCIG00000006156	UPF1	100	87.134	Phascolarctos_cinereus
ENSPMAG00000001206	upf1	100	87.805	ENSPLAG00000016232	-	100	87.805	Poecilia_latipinna
ENSPMAG00000001206	upf1	100	85.957	ENSPLAG00000018155	-	100	85.957	Poecilia_latipinna
ENSPMAG00000001206	upf1	100	86.396	ENSPMEG00000011443	-	100	86.396	Poecilia_mexicana
ENSPMAG00000001206	upf1	100	87.895	ENSPMEG00000016319	-	100	87.895	Poecilia_mexicana
ENSPMAG00000001206	upf1	100	87.805	ENSPREG00000011247	-	100	87.805	Poecilia_reticulata
ENSPMAG00000001206	upf1	100	85.868	ENSPREG00000009940	upf1	100	85.957	Poecilia_reticulata
ENSPMAG00000001206	upf1	100	81.570	ENSPPYG00000009752	UPF1	100	81.842	Pongo_abelii
ENSPMAG00000001206	upf1	70	95.960	ENSPCAG00000012962	UPF1	76	95.960	Procavia_capensis
ENSPMAG00000001206	upf1	100	86.714	ENSPCOG00000023813	UPF1	100	87.211	Propithecus_coquereli
ENSPMAG00000001206	upf1	68	89.744	ENSPVAG00000003183	UPF1	69	89.744	Pteropus_vampyrus
ENSPMAG00000001206	upf1	100	87.838	ENSPNYG00000016731	-	100	87.838	Pundamilia_nyererei
ENSPMAG00000001206	upf1	100	86.161	ENSPNYG00000003694	upf1	100	86.786	Pundamilia_nyererei
ENSPMAG00000001206	upf1	100	87.466	ENSPNAG00000025614	upf1	100	87.928	Pygocentrus_nattereri
ENSPMAG00000001206	upf1	100	86.732	ENSRNOG00000020134	Upf1	100	87.299	Rattus_norvegicus
ENSPMAG00000001206	upf1	94	86.882	ENSRBIG00000013894	UPF1	98	89.434	Rhinopithecus_bieti
ENSPMAG00000001206	upf1	94	89.068	ENSRROG00000040935	UPF1	98	89.434	Rhinopithecus_roxellana
ENSPMAG00000001206	upf1	74	56.951	YMR080C	NAM7	84	56.951	Saccharomyces_cerevisiae
ENSPMAG00000001206	upf1	94	89.058	ENSSBOG00000023632	UPF1	96	89.058	Saimiri_boliviensis_boliviensis
ENSPMAG00000001206	upf1	94	89.089	ENSSHAG00000010499	UPF1	100	89.089	Sarcophilus_harrisii
ENSPMAG00000001206	upf1	100	88.040	ENSSFOG00015021095	upf1	99	89.800	Scleropages_formosus
ENSPMAG00000001206	upf1	100	85.307	ENSSMAG00000005055	upf1	100	85.931	Scophthalmus_maximus
ENSPMAG00000001206	upf1	100	87.387	ENSSMAG00000021018	-	100	87.838	Scophthalmus_maximus
ENSPMAG00000001206	upf1	100	87.387	ENSSDUG00000009629	-	100	87.838	Seriola_dumerili
ENSPMAG00000001206	upf1	100	85.867	ENSSDUG00000013320	upf1	100	86.489	Seriola_dumerili
ENSPMAG00000001206	upf1	100	87.387	ENSSLDG00000006878	-	100	87.838	Seriola_lalandi_dorsalis
ENSPMAG00000001206	upf1	100	86.906	ENSSLDG00000020868	upf1	100	86.840	Seriola_lalandi_dorsalis
ENSPMAG00000001206	upf1	100	87.444	ENSSPUG00000010538	UPF1	100	87.623	Sphenodon_punctatus
ENSPMAG00000001206	upf1	100	87.455	ENSSPAG00000011521	-	100	87.455	Stegastes_partitus
ENSPMAG00000001206	upf1	100	84.698	ENSSPAG00000000003	upf1	100	84.788	Stegastes_partitus
ENSPMAG00000001206	upf1	100	86.844	ENSSSCG00000039301	UPF1	99	89.303	Sus_scrofa
ENSPMAG00000001206	upf1	83	83.191	ENSTGUG00000001057	UPF1	100	86.982	Taeniopygia_guttata
ENSPMAG00000001206	upf1	100	87.082	ENSTRUG00000005131	-	100	87.082	Takifugu_rubripes
ENSPMAG00000001206	upf1	100	87.263	ENSTRUG00000000150	upf1	100	87.545	Takifugu_rubripes
ENSPMAG00000001206	upf1	100	83.200	ENSTTRG00000011544	UPF1	100	83.378	Tursiops_truncatus
ENSPMAG00000001206	upf1	100	86.613	ENSUAMG00000007093	UPF1	100	86.879	Ursus_americanus
ENSPMAG00000001206	upf1	96	88.480	ENSUMAG00000006652	UPF1	99	90.196	Ursus_maritimus
ENSPMAG00000001206	upf1	100	86.613	ENSVVUG00000007797	UPF1	100	86.879	Vulpes_vulpes
ENSPMAG00000001206	upf1	100	74.494	ENSXETG00000013602	upf1	100	74.494	Xenopus_tropicalis
ENSPMAG00000001206	upf1	97	86.717	ENSXCOG00000015275	-	96	86.717	Xiphophorus_couchianus
ENSPMAG00000001206	upf1	93	89.362	ENSXCOG00000005764	-	100	89.362	Xiphophorus_couchianus
ENSPMAG00000001206	upf1	100	86.980	ENSXMAG00000001703	-	100	86.980	Xiphophorus_maculatus
ENSPMAG00000001206	upf1	100	87.805	ENSXMAG00000002540	-	100	87.805	Xiphophorus_maculatus