EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000001311 (Gene tree)
Gene ID: -
Gene Symbol: sf3b1
Alias: -
Full Name: splicing factor 3b%2C subunit 1
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 17647 bases
Position: chrGL476436:276840-294486
Accession: ZDB-GENE-040827-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000001459	SF3b1	PF08920.10	5.9e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000001465	-	3964	-	ENSPMAP00000001459	1314 (aa)	-	S4R8C8

Gene Model

Click here to download ENSPMAG00000001311's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000001311's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000001311	sf3b1	100	90.205	ENSG00000115524	SF3B1	94	96.460	Homo_sapiens
ENSPMAG00000001311	sf3b1	100	88.822	ENSAPOG00000011894	sf3b1	100	88.520	Acanthochromis_polyacanthus
ENSPMAG00000001311	sf3b1	99	90.298	ENSAMEG00000013809	SF3B1	99	90.145	Ailuropoda_melanoleuca
ENSPMAG00000001311	sf3b1	99	89.074	ENSACIG00000020910	sf3b1	97	88.771	Amphilophus_citrinellus
ENSPMAG00000001311	sf3b1	100	88.822	ENSAOCG00000004478	sf3b1	100	88.520	Amphiprion_ocellaris
ENSPMAG00000001311	sf3b1	100	88.822	ENSAPEG00000012937	sf3b1	100	88.520	Amphiprion_percula
ENSPMAG00000001311	sf3b1	100	89.191	ENSATEG00000020435	sf3b1	100	88.889	Anabas_testudineus
ENSPMAG00000001311	sf3b1	99	90.498	ENSAPLG00000003993	SF3B1	99	90.345	Anas_platyrhynchos
ENSPMAG00000001311	sf3b1	100	90.114	ENSACAG00000009612	SF3B1	100	89.962	Anolis_carolinensis
ENSPMAG00000001311	sf3b1	100	90.205	ENSANAG00000021577	SF3B1	99	92.612	Aotus_nancymaae
ENSPMAG00000001311	sf3b1	99	88.578	ENSACLG00000023470	sf3b1	99	88.275	Astatotilapia_calliptera
ENSPMAG00000001311	sf3b1	100	88.830	ENSAMXG00000002219	sf3b1	100	88.679	Astyanax_mexicanus
ENSPMAG00000001311	sf3b1	100	90.129	ENSBTAG00000008915	SF3B1	100	89.977	Bos_taurus
ENSPMAG00000001311	sf3b1	99	65.660	WBGene00011605	sftb-1	99	65.464	Caenorhabditis_elegans
ENSPMAG00000001311	sf3b1	100	90.205	ENSCJAG00000003902	SF3B1	100	90.053	Callithrix_jacchus
ENSPMAG00000001311	sf3b1	100	90.205	ENSCAFG00000010826	SF3B1	100	90.053	Canis_familiaris
ENSPMAG00000001311	sf3b1	100	90.205	ENSCAFG00020004750	SF3B1	100	90.053	Canis_lupus_dingo
ENSPMAG00000001311	sf3b1	100	90.129	ENSCHIG00000015226	SF3B1	100	89.977	Capra_hircus
ENSPMAG00000001311	sf3b1	100	90.129	ENSTSYG00000009214	SF3B1	100	89.977	Carlito_syrichta
ENSPMAG00000001311	sf3b1	99	90.367	ENSCAPG00000006547	SF3B1	99	90.214	Cavia_aperea
ENSPMAG00000001311	sf3b1	99	90.367	ENSCPOG00000009353	SF3B1	100	90.207	Cavia_porcellus
ENSPMAG00000001311	sf3b1	100	90.205	ENSCCAG00000020506	SF3B1	100	90.053	Cebus_capucinus
ENSPMAG00000001311	sf3b1	100	90.205	ENSCATG00000035735	SF3B1	100	90.053	Cercocebus_atys
ENSPMAG00000001311	sf3b1	99	90.367	ENSCLAG00000014767	SF3B1	99	90.214	Chinchilla_lanigera
ENSPMAG00000001311	sf3b1	100	90.205	ENSCSAG00000011505	SF3B1	100	90.053	Chlorocebus_sabaeus
ENSPMAG00000001311	sf3b1	76	90.557	ENSCHOG00000009860	SF3B1	76	90.557	Choloepus_hoffmanni
ENSPMAG00000001311	sf3b1	100	90.259	ENSCPBG00000021902	SF3B1	99	92.658	Chrysemys_picta_bellii
ENSPMAG00000001311	sf3b1	68	77.632	ENSCING00000002558	-	99	77.899	Ciona_intestinalis
ENSPMAG00000001311	sf3b1	99	80.167	ENSCSAVG00000002559	-	99	79.788	Ciona_savignyi
ENSPMAG00000001311	sf3b1	100	90.205	ENSCANG00000029415	SF3B1	100	90.053	Colobus_angolensis_palliatus
ENSPMAG00000001311	sf3b1	100	90.205	ENSCGRG00001016990	Sf3b1	100	90.053	Cricetulus_griseus_chok1gshd
ENSPMAG00000001311	sf3b1	100	90.205	ENSCGRG00000005301	Sf3b1	100	90.053	Cricetulus_griseus_crigri
ENSPMAG00000001311	sf3b1	100	86.126	ENSCSEG00000003860	sf3b1	100	85.823	Cynoglossus_semilaevis
ENSPMAG00000001311	sf3b1	96	89.378	ENSCVAG00000003680	sf3b1	99	89.064	Cyprinodon_variegatus
ENSPMAG00000001311	sf3b1	100	89.116	ENSDARG00000056138	sf3b1	100	88.813	Danio_rerio
ENSPMAG00000001311	sf3b1	100	90.137	ENSDNOG00000011754	SF3B1	100	89.985	Dasypus_novemcinctus
ENSPMAG00000001311	sf3b1	99	88.906	ENSDORG00000002399	Sf3b1	100	88.600	Dipodomys_ordii
ENSPMAG00000001311	sf3b1	99	76.432	FBgn0031266	Sf3b1	99	76.250	Drosophila_melanogaster
ENSPMAG00000001311	sf3b1	83	89.276	ENSETEG00000009188	SF3B1	100	89.093	Echinops_telfairi
ENSPMAG00000001311	sf3b1	99	89.008	ENSEBUG00000004325	sf3b1	100	90.682	Eptatretus_burgeri
ENSPMAG00000001311	sf3b1	100	90.205	ENSEASG00005020159	SF3B1	98	90.053	Equus_asinus_asinus
ENSPMAG00000001311	sf3b1	100	90.205	ENSECAG00000021657	SF3B1	98	90.053	Equus_caballus
ENSPMAG00000001311	sf3b1	87	98.559	ENSEEUG00000000836	SF3B1	81	98.559	Erinaceus_europaeus
ENSPMAG00000001311	sf3b1	100	88.789	ENSELUG00000005977	sf3b1	98	88.328	Esox_lucius
ENSPMAG00000001311	sf3b1	100	90.205	ENSFCAG00000005038	SF3B1	100	90.053	Felis_catus
ENSPMAG00000001311	sf3b1	99	90.421	ENSFALG00000004281	SF3B1	99	90.268	Ficedula_albicollis
ENSPMAG00000001311	sf3b1	100	90.205	ENSFDAG00000017510	SF3B1	100	90.053	Fukomys_damarensis
ENSPMAG00000001311	sf3b1	100	88.738	ENSFHEG00000014333	sf3b1	100	88.435	Fundulus_heteroclitus
ENSPMAG00000001311	sf3b1	100	89.462	ENSGMOG00000006773	sf3b1	100	89.538	Gadus_morhua
ENSPMAG00000001311	sf3b1	100	90.335	ENSGALG00000008038	SF3B1	100	90.183	Gallus_gallus
ENSPMAG00000001311	sf3b1	98	89.799	ENSGAFG00000000704	sf3b1	99	89.490	Gambusia_affinis
ENSPMAG00000001311	sf3b1	99	89.007	ENSGACG00000008839	sf3b1	99	89.083	Gasterosteus_aculeatus
ENSPMAG00000001311	sf3b1	100	89.645	ENSGAGG00000017478	SF3B1	100	89.494	Gopherus_agassizii
ENSPMAG00000001311	sf3b1	99	85.627	ENSGGOG00000009264	SF3B1	99	85.627	Gorilla_gorilla
ENSPMAG00000001311	sf3b1	99	88.578	ENSHBUG00000007705	sf3b1	99	88.275	Haplochromis_burtoni
ENSPMAG00000001311	sf3b1	99	90.367	ENSHGLG00000008285	-	99	90.214	Heterocephalus_glaber_female
ENSPMAG00000001311	sf3b1	99	88.609	ENSHGLG00100005535	-	99	88.456	Heterocephalus_glaber_male
ENSPMAG00000001311	sf3b1	100	88.421	ENSHCOG00000016775	sf3b1	100	88.271	Hippocampus_comes
ENSPMAG00000001311	sf3b1	100	89.199	ENSIPUG00000013171	sf3b1	100	89.048	Ictalurus_punctatus
ENSPMAG00000001311	sf3b1	100	90.205	ENSSTOG00000011034	SF3B1	100	90.053	Ictidomys_tridecemlineatus
ENSPMAG00000001311	sf3b1	99	90.330	ENSJJAG00000010903	Sf3b1	99	90.177	Jaculus_jaculus
ENSPMAG00000001311	sf3b1	100	88.395	ENSKMAG00000004009	sf3b1	100	88.169	Kryptolebias_marmoratus
ENSPMAG00000001311	sf3b1	99	89.506	ENSLBEG00000022208	sf3b1	99	89.202	Labrus_bergylta
ENSPMAG00000001311	sf3b1	99	87.234	ENSLACG00000014832	SF3B1	99	87.082	Latimeria_chalumnae
ENSPMAG00000001311	sf3b1	100	89.955	ENSLOCG00000003899	sf3b1	100	89.653	Lepisosteus_oculatus
ENSPMAG00000001311	sf3b1	100	90.205	ENSLAFG00000001956	SF3B1	100	90.053	Loxodonta_africana
ENSPMAG00000001311	sf3b1	99	90.367	ENSMMUG00000022430	SF3B1	99	90.214	Macaca_mulatta
ENSPMAG00000001311	sf3b1	100	90.205	ENSMNEG00000042333	SF3B1	99	92.612	Macaca_nemestrina
ENSPMAG00000001311	sf3b1	94	86.003	ENSMLEG00000026141	SF3B1	99	85.840	Mandrillus_leucophaeus
ENSPMAG00000001311	sf3b1	100	89.116	ENSMAMG00000010241	sf3b1	100	88.813	Mastacembelus_armatus
ENSPMAG00000001311	sf3b1	99	88.578	ENSMZEG00005021254	sf3b1	99	88.275	Maylandia_zebra
ENSPMAG00000001311	sf3b1	99	89.885	ENSMGAG00000007017	SF3B1	99	89.732	Meleagris_gallopavo
ENSPMAG00000001311	sf3b1	99	86.315	ENSMAUG00000009071	Sf3b1	99	86.162	Mesocricetus_auratus
ENSPMAG00000001311	sf3b1	100	90.205	ENSMICG00000013879	SF3B1	100	90.053	Microcebus_murinus
ENSPMAG00000001311	sf3b1	99	85.943	ENSMOCG00000000455	Sf3b1	99	85.791	Microtus_ochrogaster
ENSPMAG00000001311	sf3b1	84	89.020	ENSMMOG00000000475	sf3b1	100	88.657	Mola_mola
ENSPMAG00000001311	sf3b1	100	89.970	ENSMODG00000012275	SF3B1	100	89.818	Monodelphis_domestica
ENSPMAG00000001311	sf3b1	100	88.964	ENSMALG00000017211	sf3b1	100	88.662	Monopterus_albus
ENSPMAG00000001311	sf3b1	100	90.205	MGP_CAROLIEiJ_G0014141	Sf3b1	100	90.053	Mus_caroli
ENSPMAG00000001311	sf3b1	100	90.205	ENSMUSG00000025982	Sf3b1	100	90.053	Mus_musculus
ENSPMAG00000001311	sf3b1	100	90.205	MGP_SPRETEiJ_G0014947	Sf3b1	100	90.053	Mus_spretus
ENSPMAG00000001311	sf3b1	100	90.205	ENSMPUG00000007799	SF3B1	100	90.053	Mustela_putorius_furo
ENSPMAG00000001311	sf3b1	100	89.066	ENSMLUG00000000840	SF3B1	100	88.914	Myotis_lucifugus
ENSPMAG00000001311	sf3b1	99	90.360	ENSNGAG00000021884	-	99	90.207	Nannospalax_galili
ENSPMAG00000001311	sf3b1	99	86.202	ENSNBRG00000015816	sf3b1	99	85.898	Neolamprologus_brichardi
ENSPMAG00000001311	sf3b1	100	90.205	ENSNLEG00000006861	SF3B1	100	90.053	Nomascus_leucogenys
ENSPMAG00000001311	sf3b1	68	98.017	ENSMEUG00000015848	-	67	98.017	Notamacropus_eugenii
ENSPMAG00000001311	sf3b1	100	78.752	ENSOPRG00000008596	SF3B1	100	78.826	Ochotona_princeps
ENSPMAG00000001311	sf3b1	100	90.205	ENSODEG00000011153	-	100	90.053	Octodon_degus
ENSPMAG00000001311	sf3b1	99	88.578	ENSONIG00000013758	sf3b1	99	88.275	Oreochromis_niloticus
ENSPMAG00000001311	sf3b1	83	93.192	ENSOCUG00000012722	-	96	93.192	Oryctolagus_cuniculus
ENSPMAG00000001311	sf3b1	100	89.040	ENSORLG00000020219	sf3b1	100	88.738	Oryzias_latipes
ENSPMAG00000001311	sf3b1	100	89.040	ENSORLG00020001746	sf3b1	100	88.738	Oryzias_latipes_hni
ENSPMAG00000001311	sf3b1	64	86.187	ENSORLG00015001759	sf3b1	98	85.714	Oryzias_latipes_hsok
ENSPMAG00000001311	sf3b1	100	88.964	ENSOMEG00000019231	sf3b1	100	88.662	Oryzias_melastigma
ENSPMAG00000001311	sf3b1	100	90.129	ENSOARG00000015374	SF3B1	100	89.977	Ovis_aries
ENSPMAG00000001311	sf3b1	100	90.205	ENSPPAG00000035007	SF3B1	100	90.053	Pan_paniscus
ENSPMAG00000001311	sf3b1	100	90.205	ENSPPRG00000009090	SF3B1	100	90.053	Panthera_pardus
ENSPMAG00000001311	sf3b1	100	90.205	ENSPTIG00000021557	SF3B1	100	90.053	Panthera_tigris_altaica
ENSPMAG00000001311	sf3b1	99	83.448	ENSPTRG00000012771	SF3B1	99	83.295	Pan_troglodytes
ENSPMAG00000001311	sf3b1	100	90.205	ENSPANG00000013417	SF3B1	100	90.053	Papio_anubis
ENSPMAG00000001311	sf3b1	100	89.939	ENSPKIG00000000784	sf3b1	100	89.637	Paramormyrops_kingsleyae
ENSPMAG00000001311	sf3b1	99	89.340	ENSPSIG00000017222	SF3B1	98	89.340	Pelodiscus_sinensis
ENSPMAG00000001311	sf3b1	91	89.774	ENSPMGG00000004330	sf3b1	99	89.438	Periophthalmus_magnuspinnatus
ENSPMAG00000001311	sf3b1	99	90.367	ENSPEMG00000010699	Sf3b1	100	90.214	Peromyscus_maniculatus_bairdii
ENSPMAG00000001311	sf3b1	100	89.970	ENSPCIG00000010642	SF3B1	100	89.818	Phascolarctos_cinereus
ENSPMAG00000001311	sf3b1	100	89.048	ENSPFOG00000000073	sf3b1	100	88.746	Poecilia_formosa
ENSPMAG00000001311	sf3b1	100	89.116	ENSPLAG00000002293	sf3b1	100	88.813	Poecilia_latipinna
ENSPMAG00000001311	sf3b1	100	89.116	ENSPMEG00000000446	sf3b1	98	88.813	Poecilia_mexicana
ENSPMAG00000001311	sf3b1	100	89.191	ENSPREG00000019652	sf3b1	100	88.889	Poecilia_reticulata
ENSPMAG00000001311	sf3b1	100	94.194	ENSPPYG00000013044	SF3B1	100	94.194	Pongo_abelii
ENSPMAG00000001311	sf3b1	100	90.053	ENSPCAG00000009292	SF3B1	100	89.901	Procavia_capensis
ENSPMAG00000001311	sf3b1	100	90.205	ENSPCOG00000024074	SF3B1	100	90.053	Propithecus_coquereli
ENSPMAG00000001311	sf3b1	100	90.205	ENSPVAG00000008302	SF3B1	100	90.053	Pteropus_vampyrus
ENSPMAG00000001311	sf3b1	99	88.578	ENSPNYG00000014939	sf3b1	99	88.275	Pundamilia_nyererei
ENSPMAG00000001311	sf3b1	100	89.057	ENSPNAG00000008288	sf3b1	100	89.132	Pygocentrus_nattereri
ENSPMAG00000001311	sf3b1	100	90.205	ENSRNOG00000013516	Sf3b1	100	90.053	Rattus_norvegicus
ENSPMAG00000001311	sf3b1	99	86.947	ENSRBIG00000026096	SF3B1	99	86.794	Rhinopithecus_bieti
ENSPMAG00000001311	sf3b1	100	90.205	ENSRROG00000031308	SF3B1	100	90.053	Rhinopithecus_roxellana
ENSPMAG00000001311	sf3b1	100	90.205	ENSSBOG00000020080	SF3B1	100	90.053	Saimiri_boliviensis_boliviensis
ENSPMAG00000001311	sf3b1	100	89.970	ENSSHAG00000017564	SF3B1	100	89.818	Sarcophilus_harrisii
ENSPMAG00000001311	sf3b1	100	89.728	ENSSFOG00015021535	sf3b1	100	89.728	Scleropages_formosus
ENSPMAG00000001311	sf3b1	99	88.830	ENSSMAG00000013977	sf3b1	99	88.528	Scophthalmus_maximus
ENSPMAG00000001311	sf3b1	100	89.040	ENSSDUG00000017422	sf3b1	100	88.738	Seriola_dumerili
ENSPMAG00000001311	sf3b1	100	89.040	ENSSLDG00000019495	sf3b1	100	88.738	Seriola_lalandi_dorsalis
ENSPMAG00000001311	sf3b1	75	95.951	ENSSARG00000007016	SF3B1	76	95.951	Sorex_araneus
ENSPMAG00000001311	sf3b1	100	90.107	ENSSPUG00000000410	SF3B1	100	89.954	Sphenodon_punctatus
ENSPMAG00000001311	sf3b1	100	88.964	ENSSPAG00000010451	sf3b1	99	88.662	Stegastes_partitus
ENSPMAG00000001311	sf3b1	91	90.100	ENSSSCG00000016075	SF3B1	99	92.612	Sus_scrofa
ENSPMAG00000001311	sf3b1	100	90.335	ENSTGUG00000010553	SF3B1	100	90.183	Taeniopygia_guttata
ENSPMAG00000001311	sf3b1	100	89.040	ENSTRUG00000015534	sf3b1	100	88.738	Takifugu_rubripes
ENSPMAG00000001311	sf3b1	85	94.845	ENSTBEG00000008714	SF3B1	93	94.845	Tupaia_belangeri
ENSPMAG00000001311	sf3b1	92	90.898	ENSTTRG00000003414	SF3B1	92	90.898	Tursiops_truncatus
ENSPMAG00000001311	sf3b1	94	80.000	ENSUAMG00000018506	SF3B1	99	95.142	Ursus_americanus
ENSPMAG00000001311	sf3b1	100	90.205	ENSUMAG00000020945	SF3B1	100	90.053	Ursus_maritimus
ENSPMAG00000001311	sf3b1	100	83.207	ENSVPAG00000005798	SF3B1	100	83.055	Vicugna_pacos
ENSPMAG00000001311	sf3b1	100	90.205	ENSVVUG00000025948	SF3B1	95	90.053	Vulpes_vulpes
ENSPMAG00000001311	sf3b1	100	88.990	ENSXETG00000013339	sf3b1	100	88.838	Xenopus_tropicalis
ENSPMAG00000001311	sf3b1	100	85.368	ENSXCOG00000018086	sf3b1	100	85.292	Xiphophorus_couchianus
ENSPMAG00000001311	sf3b1	100	89.191	ENSXMAG00000007369	sf3b1	100	89.280	Xiphophorus_maculatus