EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000001399 (Gene tree)
Gene ID: -
Gene Symbol: rab5c (1 of many)
Alias: -
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 3946 bases
Position: chrGL476520:36441-40386
Accession: ZDB-GENE-031118-30
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000001541	MMR_HSR1	PF01926.23	1.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000001548	-	947	-	ENSPMAP00000001541	210 (aa)	-	S4R8L0

Gene Model

Click here to download ENSPMAG00000001399's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000001399's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000001399	rab5c	86	31.868	ENSPMAG00000004548	hrasb	93	31.868
ENSPMAG00000001399	rab5c	85	45.251	ENSPMAG00000001403	-	89	45.251
ENSPMAG00000001399	rab5c	71	36.196	ENSPMAG00000005537	rab27a	73	36.196
ENSPMAG00000001399	rab5c	77	42.236	ENSPMAG00000008764	RAB2B	88	42.236
ENSPMAG00000001399	rab5c	75	34.375	ENSPMAG00000004657	rab36	66	34.375
ENSPMAG00000001399	rab5c	99	82.857	ENSPMAG00000007867	rab5c	99	82.857
ENSPMAG00000001399	rab5c	76	33.333	ENSPMAG00000006835	-	71	33.918
ENSPMAG00000001399	rab5c	77	41.818	ENSPMAG00000005938	-	97	41.818
ENSPMAG00000001399	rab5c	79	42.771	ENSPMAG00000006171	-	78	42.771
ENSPMAG00000001399	rab5c	100	75.799	ENSPMAG00000000008	rab5c	100	75.799
ENSPMAG00000001399	rab5c	77	39.521	ENSPMAG00000007247	rab33ba	69	39.521
ENSPMAG00000001399	rab5c	63	37.879	ENSPMAG00000004439	rab20	55	38.346
ENSPMAG00000001399	rab5c	57	30.579	ENSPMAG00000007507	arl8ba	63	30.579
ENSPMAG00000001399	rab5c	90	40.722	ENSPMAG00000001801	rab1ba	95	40.722
ENSPMAG00000001399	rab5c	78	41.212	ENSPMAG00000005322	rab18b	79	41.212
ENSPMAG00000001399	rab5c	89	40.196	ENSPMAG00000009335	-	99	40.196
ENSPMAG00000001399	rab5c	78	32.941	ENSPMAG00000006671	si:cabz01085950.1	83	32.941
ENSPMAG00000001399	rab5c	83	44.000	ENSPMAG00000002006	-	80	44.000
ENSPMAG00000001399	rab5c	90	40.212	ENSPMAG00000006105	rab30	86	40.212

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000001399	rab5c	100	79.535	ENSG00000108774	RAB5C	100	91.209	Homo_sapiens
ENSPMAG00000001399	rab5c	99	77.209	ENSAPOG00000016864	rab5c	98	77.209	Acanthochromis_polyacanthus
ENSPMAG00000001399	rab5c	100	80.000	ENSAMEG00000006003	RAB5C	99	80.000	Ailuropoda_melanoleuca
ENSPMAG00000001399	rab5c	99	76.389	ENSACIG00000010896	rab5c	99	75.115	Amphilophus_citrinellus
ENSPMAG00000001399	rab5c	99	77.315	ENSAOCG00000016614	rab5c	99	76.959	Amphiprion_ocellaris
ENSPMAG00000001399	rab5c	96	77.990	ENSAPEG00000017868	-	96	77.619	Amphiprion_percula
ENSPMAG00000001399	rab5c	99	76.852	ENSATEG00000001937	rab5c	99	76.852	Anabas_testudineus
ENSPMAG00000001399	rab5c	91	83.854	ENSANAG00000025390	RAB5C	94	83.854	Aotus_nancymaae
ENSPMAG00000001399	rab5c	99	76.389	ENSACLG00000002706	rab5c	99	76.037	Astatotilapia_calliptera
ENSPMAG00000001399	rab5c	97	76.777	ENSACLG00000008615	-	99	75.455	Astatotilapia_calliptera
ENSPMAG00000001399	rab5c	97	76.777	ENSAMXG00000037267	-	100	77.251	Astyanax_mexicanus
ENSPMAG00000001399	rab5c	99	77.419	ENSAMXG00000043717	rab5c	99	76.147	Astyanax_mexicanus
ENSPMAG00000001399	rab5c	100	80.000	ENSBTAG00000006982	RAB5C	99	80.000	Bos_taurus
ENSPMAG00000001399	rab5c	99	74.519	WBGene00004268	rab-5	98	74.519	Caenorhabditis_elegans
ENSPMAG00000001399	rab5c	100	80.000	ENSCAFG00000015629	RAB5C	99	80.000	Canis_familiaris
ENSPMAG00000001399	rab5c	100	80.000	ENSCAFG00020013537	RAB5C	99	80.000	Canis_lupus_dingo
ENSPMAG00000001399	rab5c	100	80.000	ENSCHIG00000012960	RAB5C	99	80.000	Capra_hircus
ENSPMAG00000001399	rab5c	100	79.535	ENSTSYG00000030531	RAB5C	99	79.535	Carlito_syrichta
ENSPMAG00000001399	rab5c	100	79.070	ENSCCAG00000025940	RAB5C	99	79.070	Cebus_capucinus
ENSPMAG00000001399	rab5c	100	79.535	ENSCATG00000040873	RAB5C	99	79.535	Cercocebus_atys
ENSPMAG00000001399	rab5c	100	79.070	ENSCLAG00000016650	RAB5C	99	79.070	Chinchilla_lanigera
ENSPMAG00000001399	rab5c	85	86.517	ENSCHOG00000009886	RAB5C	100	86.517	Choloepus_hoffmanni
ENSPMAG00000001399	rab5c	99	74.766	ENSCING00000003340	-	99	74.766	Ciona_intestinalis
ENSPMAG00000001399	rab5c	92	78.392	ENSCSAVG00000000613	-	99	80.864	Ciona_savignyi
ENSPMAG00000001399	rab5c	100	79.535	ENSCGRG00001014226	Rab5c	99	79.535	Cricetulus_griseus_chok1gshd
ENSPMAG00000001399	rab5c	100	79.535	ENSCGRG00000007534	Rab5c	99	79.535	Cricetulus_griseus_crigri
ENSPMAG00000001399	rab5c	100	75.576	ENSCSEG00000017024	rab5c	99	75.576	Cynoglossus_semilaevis
ENSPMAG00000001399	rab5c	99	75.926	ENSCVAG00000009550	rab5c	99	75.576	Cyprinodon_variegatus
ENSPMAG00000001399	rab5c	100	79.070	ENSDNOG00000038853	RAB5C	99	79.070	Dasypus_novemcinctus
ENSPMAG00000001399	rab5c	100	79.535	ENSDORG00000006819	Rab5c	99	79.535	Dipodomys_ordii
ENSPMAG00000001399	rab5c	90	81.053	FBgn0014010	Rab5	86	81.053	Drosophila_melanogaster
ENSPMAG00000001399	rab5c	99	84.834	ENSEBUG00000014794	rab5c	99	84.834	Eptatretus_burgeri
ENSPMAG00000001399	rab5c	100	80.000	ENSEASG00005009281	RAB5C	99	80.000	Equus_asinus_asinus
ENSPMAG00000001399	rab5c	100	79.535	ENSECAG00000025054	RAB5C	99	79.535	Equus_caballus
ENSPMAG00000001399	rab5c	100	79.070	ENSEEUG00000002790	RAB5C	99	79.070	Erinaceus_europaeus
ENSPMAG00000001399	rab5c	100	76.498	ENSELUG00000010439	-	99	76.498	Esox_lucius
ENSPMAG00000001399	rab5c	99	76.852	ENSELUG00000018516	rab5c	99	76.852	Esox_lucius
ENSPMAG00000001399	rab5c	100	80.000	ENSFCAG00000002148	RAB5C	99	80.000	Felis_catus
ENSPMAG00000001399	rab5c	100	78.140	ENSFDAG00000021541	RAB5C	99	78.140	Fukomys_damarensis
ENSPMAG00000001399	rab5c	100	77.982	ENSFHEG00000015268	-	99	77.982	Fundulus_heteroclitus
ENSPMAG00000001399	rab5c	99	76.389	ENSFHEG00000012117	rab5c	99	76.037	Fundulus_heteroclitus
ENSPMAG00000001399	rab5c	82	79.769	ENSGMOG00000001876	-	100	79.769	Gadus_morhua
ENSPMAG00000001399	rab5c	99	75.463	ENSGMOG00000015096	rab5c	99	75.115	Gadus_morhua
ENSPMAG00000001399	rab5c	99	76.389	ENSGAFG00000000884	rab5c	99	75.115	Gambusia_affinis
ENSPMAG00000001399	rab5c	94	80.808	ENSGAFG00000003642	-	99	74.661	Gambusia_affinis
ENSPMAG00000001399	rab5c	89	84.946	ENSGACG00000008659	rab5c	99	75.115	Gasterosteus_aculeatus
ENSPMAG00000001399	rab5c	100	79.535	ENSGGOG00000005472	RAB5C	99	79.535	Gorilla_gorilla
ENSPMAG00000001399	rab5c	97	76.777	ENSHBUG00000006823	-	99	75.455	Haplochromis_burtoni
ENSPMAG00000001399	rab5c	99	76.389	ENSHBUG00000002014	rab5c	99	76.037	Haplochromis_burtoni
ENSPMAG00000001399	rab5c	100	78.140	ENSHGLG00000012067	RAB5C	99	78.140	Heterocephalus_glaber_female
ENSPMAG00000001399	rab5c	97	75.943	ENSHCOG00000020238	-	99	74.654	Hippocampus_comes
ENSPMAG00000001399	rab5c	99	76.498	ENSHCOG00000004662	rab5c	97	76.147	Hippocampus_comes
ENSPMAG00000001399	rab5c	98	74.057	ENSIPUG00000020082	rab5c	99	74.886	Ictalurus_punctatus
ENSPMAG00000001399	rab5c	100	79.535	ENSSTOG00000006620	RAB5C	99	79.535	Ictidomys_tridecemlineatus
ENSPMAG00000001399	rab5c	100	79.535	ENSJJAG00000021181	Rab5c	99	79.535	Jaculus_jaculus
ENSPMAG00000001399	rab5c	99	75.926	ENSKMAG00000020038	rab5c	99	75.576	Kryptolebias_marmoratus
ENSPMAG00000001399	rab5c	100	75.229	ENSKMAG00000017417	-	99	75.229	Kryptolebias_marmoratus
ENSPMAG00000001399	rab5c	99	77.778	ENSLBEG00000004128	rab5c	99	77.419	Labrus_bergylta
ENSPMAG00000001399	rab5c	100	77.880	ENSLBEG00000010408	-	99	77.880	Labrus_bergylta
ENSPMAG00000001399	rab5c	99	79.439	ENSLOCG00000012566	rab5c	100	79.439	Lepisosteus_oculatus
ENSPMAG00000001399	rab5c	100	79.535	ENSMFAG00000039627	RAB5C	99	79.535	Macaca_fascicularis
ENSPMAG00000001399	rab5c	100	79.535	ENSMNEG00000000355	RAB5C	99	79.535	Macaca_nemestrina
ENSPMAG00000001399	rab5c	100	78.440	ENSMAMG00000016207	-	99	78.440	Mastacembelus_armatus
ENSPMAG00000001399	rab5c	99	77.315	ENSMAMG00000022322	rab5c	99	76.037	Mastacembelus_armatus
ENSPMAG00000001399	rab5c	97	76.777	ENSMZEG00005021090	-	99	75.455	Maylandia_zebra
ENSPMAG00000001399	rab5c	99	76.389	ENSMZEG00005022735	rab5c	99	76.037	Maylandia_zebra
ENSPMAG00000001399	rab5c	100	79.535	ENSMAUG00000015005	Rab5c	99	79.535	Mesocricetus_auratus
ENSPMAG00000001399	rab5c	100	79.535	ENSMICG00000041608	RAB5C	99	79.535	Microcebus_murinus
ENSPMAG00000001399	rab5c	100	79.535	ENSMOCG00000018531	-	99	79.535	Microtus_ochrogaster
ENSPMAG00000001399	rab5c	100	76.037	ENSMMOG00000020621	rab5c	99	76.037	Mola_mola
ENSPMAG00000001399	rab5c	100	77.523	ENSMALG00000022348	-	99	77.523	Monopterus_albus
ENSPMAG00000001399	rab5c	97	75.472	ENSMALG00000006052	rab5c	96	74.771	Monopterus_albus
ENSPMAG00000001399	rab5c	100	79.535	MGP_CAROLIEiJ_G0017184	Rab5c	99	79.535	Mus_caroli
ENSPMAG00000001399	rab5c	100	79.535	ENSMUSG00000019173	Rab5c	99	79.535	Mus_musculus
ENSPMAG00000001399	rab5c	100	79.535	MGP_PahariEiJ_G0018314	Rab5c	99	79.535	Mus_pahari
ENSPMAG00000001399	rab5c	100	79.535	MGP_SPRETEiJ_G0018027	Rab5c	99	79.535	Mus_spretus
ENSPMAG00000001399	rab5c	100	80.000	ENSMPUG00000010554	RAB5C	99	80.000	Mustela_putorius_furo
ENSPMAG00000001399	rab5c	100	78.605	ENSNGAG00000010286	Rab5c	99	78.605	Nannospalax_galili
ENSPMAG00000001399	rab5c	99	76.389	ENSNBRG00000018165	rab5c	99	76.037	Neolamprologus_brichardi
ENSPMAG00000001399	rab5c	97	76.777	ENSNBRG00000016922	-	99	75.455	Neolamprologus_brichardi
ENSPMAG00000001399	rab5c	85	81.461	ENSOPRG00000008255	RAB5C	100	81.461	Ochotona_princeps
ENSPMAG00000001399	rab5c	100	78.140	ENSODEG00000017920	RAB5C	99	78.140	Octodon_degus
ENSPMAG00000001399	rab5c	99	76.852	ENSONIG00000001113	rab5c	99	76.498	Oreochromis_niloticus
ENSPMAG00000001399	rab5c	99	75.926	ENSORLG00000003882	rab5c	99	75.576	Oryzias_latipes
ENSPMAG00000001399	rab5c	100	75.576	ENSORLG00020008388	rab5c	99	75.576	Oryzias_latipes_hni
ENSPMAG00000001399	rab5c	99	75.926	ENSORLG00015021900	rab5c	99	75.576	Oryzias_latipes_hsok
ENSPMAG00000001399	rab5c	99	75.926	ENSOMEG00000023078	rab5c	99	75.576	Oryzias_melastigma
ENSPMAG00000001399	rab5c	100	79.070	ENSOGAG00000009456	RAB5C	99	79.070	Otolemur_garnettii
ENSPMAG00000001399	rab5c	100	80.000	ENSOARG00000018768	RAB5C	99	80.000	Ovis_aries
ENSPMAG00000001399	rab5c	100	79.535	ENSPPAG00000037206	RAB5C	99	79.535	Pan_paniscus
ENSPMAG00000001399	rab5c	100	80.000	ENSPPRG00000005745	RAB5C	99	80.000	Panthera_pardus
ENSPMAG00000001399	rab5c	100	80.000	ENSPTIG00000008177	RAB5C	99	80.000	Panthera_tigris_altaica
ENSPMAG00000001399	rab5c	100	79.535	ENSPTRG00000009194	RAB5C	99	79.535	Pan_troglodytes
ENSPMAG00000001399	rab5c	99	76.606	ENSPKIG00000020112	-	99	76.606	Paramormyrops_kingsleyae
ENSPMAG00000001399	rab5c	99	78.605	ENSPKIG00000001237	-	99	78.605	Paramormyrops_kingsleyae
ENSPMAG00000001399	rab5c	100	75.115	ENSPMGG00000010792	rab5c	97	76.190	Periophthalmus_magnuspinnatus
ENSPMAG00000001399	rab5c	100	79.535	ENSPEMG00000017971	Rab5c	99	79.535	Peromyscus_maniculatus_bairdii
ENSPMAG00000001399	rab5c	100	80.000	ENSPCIG00000020225	-	99	80.000	Phascolarctos_cinereus
ENSPMAG00000001399	rab5c	99	76.389	ENSPLAG00000004790	rab5c	99	75.115	Poecilia_latipinna
ENSPMAG00000001399	rab5c	100	76.037	ENSPLAG00000016333	-	99	76.037	Poecilia_latipinna
ENSPMAG00000001399	rab5c	99	76.389	ENSPMEG00000011336	rab5c	99	75.115	Poecilia_mexicana
ENSPMAG00000001399	rab5c	89	84.492	ENSPMEG00000012614	-	99	75.455	Poecilia_mexicana
ENSPMAG00000001399	rab5c	99	77.990	ENSPREG00000022167	-	98	77.990	Poecilia_reticulata
ENSPMAG00000001399	rab5c	99	76.389	ENSPREG00000010146	rab5c	99	75.115	Poecilia_reticulata
ENSPMAG00000001399	rab5c	100	79.535	ENSPPYG00000008398	RAB5C	99	79.535	Pongo_abelii
ENSPMAG00000001399	rab5c	100	78.972	ENSPCAG00000016412	RAB5C	99	78.972	Procavia_capensis
ENSPMAG00000001399	rab5c	100	79.070	ENSPCOG00000026327	RAB5C	99	79.070	Propithecus_coquereli
ENSPMAG00000001399	rab5c	100	79.535	ENSPVAG00000003867	RAB5C	99	79.535	Pteropus_vampyrus
ENSPMAG00000001399	rab5c	97	76.777	ENSPNYG00000015851	-	99	75.455	Pundamilia_nyererei
ENSPMAG00000001399	rab5c	99	76.389	ENSPNYG00000010615	rab5c	99	76.037	Pundamilia_nyererei
ENSPMAG00000001399	rab5c	100	76.147	ENSPNAG00000028138	rab5c	99	76.147	Pygocentrus_nattereri
ENSPMAG00000001399	rab5c	97	76.777	ENSPNAG00000002218	-	99	76.887	Pygocentrus_nattereri
ENSPMAG00000001399	rab5c	100	79.535	ENSRNOG00000018568	Rab5c	99	79.535	Rattus_norvegicus
ENSPMAG00000001399	rab5c	100	79.535	ENSRBIG00000031376	RAB5C	99	79.535	Rhinopithecus_bieti
ENSPMAG00000001399	rab5c	100	79.535	ENSRROG00000032895	RAB5C	99	79.535	Rhinopithecus_roxellana
ENSPMAG00000001399	rab5c	100	79.070	ENSSBOG00000032552	-	99	79.070	Saimiri_boliviensis_boliviensis
ENSPMAG00000001399	rab5c	100	80.000	ENSSHAG00000005267	-	99	80.000	Sarcophilus_harrisii
ENSPMAG00000001399	rab5c	100	74.194	ENSSFOG00015009988	-	99	74.194	Scleropages_formosus
ENSPMAG00000001399	rab5c	89	84.946	ENSSMAG00000007323	rab5c	99	75.576	Scophthalmus_maximus
ENSPMAG00000001399	rab5c	100	77.419	ENSSDUG00000023008	rab5c	99	77.419	Seriola_dumerili
ENSPMAG00000001399	rab5c	100	76.959	ENSSLDG00000017771	rab5c	99	76.959	Seriola_lalandi_dorsalis
ENSPMAG00000001399	rab5c	100	80.465	ENSSPUG00000012950	-	99	80.465	Sphenodon_punctatus
ENSPMAG00000001399	rab5c	99	77.315	ENSSPAG00000006436	rab5c	99	76.037	Stegastes_partitus
ENSPMAG00000001399	rab5c	100	80.000	ENSSSCG00000032467	RAB5C	99	80.000	Sus_scrofa
ENSPMAG00000001399	rab5c	100	75.576	ENSTRUG00000015590	rab5c	99	76.037	Takifugu_rubripes
ENSPMAG00000001399	rab5c	96	76.555	ENSTNIG00000011711	rab5c	95	76.555	Tetraodon_nigroviridis
ENSPMAG00000001399	rab5c	100	79.535	ENSTBEG00000007092	RAB5C	99	79.535	Tupaia_belangeri
ENSPMAG00000001399	rab5c	100	80.000	ENSTTRG00000006673	RAB5C	99	80.000	Tursiops_truncatus
ENSPMAG00000001399	rab5c	100	80.000	ENSUAMG00000024343	RAB5C	99	80.000	Ursus_americanus
ENSPMAG00000001399	rab5c	100	80.000	ENSUMAG00000023270	RAB5C	99	80.000	Ursus_maritimus
ENSPMAG00000001399	rab5c	99	76.389	ENSXCOG00000016788	rab5c	99	77.830	Xiphophorus_couchianus
ENSPMAG00000001399	rab5c	94	81.313	ENSXCOG00000006300	-	99	75.113	Xiphophorus_couchianus
ENSPMAG00000001399	rab5c	100	75.926	ENSXMAG00000022179	-	99	75.926	Xiphophorus_maculatus
ENSPMAG00000001399	rab5c	99	76.389	ENSXMAG00000003266	rab5c	99	75.115	Xiphophorus_maculatus