EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000001403 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 4352 bases
Position: chrGL476520:43153-47504
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000001545	MMR_HSR1	PF01926.23	1.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000001552	-	846	-	ENSPMAP00000001545	201 (aa)	-	S4R8L4

Gene Model

Click here to download ENSPMAG00000001403's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000001403's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000001403	-	81	30.120	ENSPMAG00000004657	rab36	69	30.120
ENSPMAG00000001403	-	84	44.970	ENSPMAG00000006105	rab30	80	44.970
ENSPMAG00000001403	-	81	47.853	ENSPMAG00000000008	rab5c	74	47.853
ENSPMAG00000001403	-	76	30.573	ENSPMAG00000000547	rheb	83	30.573
ENSPMAG00000001403	-	85	38.235	ENSPMAG00000001801	rab1ba	82	38.235
ENSPMAG00000001403	-	89	45.251	ENSPMAG00000001399	rab5c	85	45.251
ENSPMAG00000001403	-	82	41.463	ENSPMAG00000008764	RAB2B	89	41.463
ENSPMAG00000001403	-	77	40.000	ENSPMAG00000009335	-	75	40.000
ENSPMAG00000001403	-	57	41.739	ENSPMAG00000004439	rab20	52	42.241
ENSPMAG00000001403	-	79	34.302	ENSPMAG00000005537	rab27a	77	34.302
ENSPMAG00000001403	-	80	42.857	ENSPMAG00000006171	-	76	42.857
ENSPMAG00000001403	-	84	36.782	ENSPMAG00000007247	rab33ba	72	36.782
ENSPMAG00000001403	-	83	45.783	ENSPMAG00000007867	rab5c	79	45.783
ENSPMAG00000001403	-	80	38.889	ENSPMAG00000005938	-	97	38.889
ENSPMAG00000001403	-	80	40.123	ENSPMAG00000005322	rab18b	77	40.123
ENSPMAG00000001403	-	72	34.247	ENSPMAG00000006671	si:cabz01085950.1	72	34.247
ENSPMAG00000001403	-	87	36.207	ENSPMAG00000002006	-	81	36.207

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000001403	-	84	44.118	ENSAPOG00000011363	-	74	44.118	Acanthochromis_polyacanthus
ENSPMAG00000001403	-	86	39.205	ENSEBUG00000015845	-	80	39.205	Eptatretus_burgeri
ENSPMAG00000001403	-	86	36.047	ENSEBUG00000012680	-	72	36.047	Eptatretus_burgeri
ENSPMAG00000001403	-	80	46.296	ENSPMGG00000019723	-	81	46.296	Periophthalmus_magnuspinnatus
ENSPMAG00000001403	-	80	42.683	YOR089C	VPS21	78	42.683	Saccharomyces_cerevisiae
ENSPMAG00000001403	-	81	34.524	YNL093W	-	76	34.524	Saccharomyces_cerevisiae
ENSPMAG00000001403	-	83	44.048	ENSTNIG00000017844	-	89	44.048	Tetraodon_nigroviridis