EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000001563 (Gene tree)
Gene ID: -
Gene Symbol: rpusd1
Alias: -
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 4486 bases
Position: chrGL477670:311117-315602
Accession: ZDB-GENE-060929-444
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000001726	PseudoU_synth_2	PF00849.22	3.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000001735	-	912	-	ENSPMAP00000001726	304 (aa)	-	S4R945

Gene Model

Click here to download ENSPMAG00000001563's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000001563's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000001563	rpusd1	81	56.175	ENSG00000007376	RPUSD1	100	56.805	Homo_sapiens
ENSPMAG00000001563	rpusd1	99	53.618	ENSAPOG00000022221	rpusd1	99	53.618	Acanthochromis_polyacanthus
ENSPMAG00000001563	rpusd1	99	52.632	ENSAMEG00000007461	RPUSD1	98	52.632	Ailuropoda_melanoleuca
ENSPMAG00000001563	rpusd1	99	53.247	ENSACIG00000015863	rpusd1	99	54.221	Amphilophus_citrinellus
ENSPMAG00000001563	rpusd1	99	53.420	ENSAOCG00000021975	rpusd1	96	53.420	Amphiprion_ocellaris
ENSPMAG00000001563	rpusd1	99	53.746	ENSAPEG00000001316	rpusd1	96	53.871	Amphiprion_percula
ENSPMAG00000001563	rpusd1	84	57.198	ENSATEG00000002984	rpusd1	99	51.792	Anabas_testudineus
ENSPMAG00000001563	rpusd1	77	50.000	ENSAPLG00000012316	RPUSD1	80	56.477	Anas_platyrhynchos
ENSPMAG00000001563	rpusd1	99	53.974	ENSACAG00000008953	RPUSD1	99	53.642	Anolis_carolinensis
ENSPMAG00000001563	rpusd1	81	57.769	ENSANAG00000024709	RPUSD1	82	56.977	Aotus_nancymaae
ENSPMAG00000001563	rpusd1	99	54.369	ENSACLG00000013692	rpusd1	99	54.045	Astatotilapia_calliptera
ENSPMAG00000001563	rpusd1	100	53.115	ENSAMXG00000019802	rpusd1	100	53.115	Astyanax_mexicanus
ENSPMAG00000001563	rpusd1	84	60.232	ENSBTAG00000000179	RPUSD1	98	53.289	Bos_taurus
ENSPMAG00000001563	rpusd1	81	57.769	ENSCJAG00000012253	RPUSD1	82	56.977	Callithrix_jacchus
ENSPMAG00000001563	rpusd1	84	58.301	ENSCAFG00000019614	RPUSD1	98	52.632	Canis_familiaris
ENSPMAG00000001563	rpusd1	84	58.301	ENSCAFG00020008891	RPUSD1	98	52.632	Canis_lupus_dingo
ENSPMAG00000001563	rpusd1	84	60.618	ENSCHIG00000012872	RPUSD1	98	53.618	Capra_hircus
ENSPMAG00000001563	rpusd1	84	56.757	ENSTSYG00000036934	RPUSD1	85	56.757	Carlito_syrichta
ENSPMAG00000001563	rpusd1	99	50.329	ENSCAPG00000014219	RPUSD1	84	55.985	Cavia_aperea
ENSPMAG00000001563	rpusd1	99	50.329	ENSCPOG00000034604	RPUSD1	84	55.985	Cavia_porcellus
ENSPMAG00000001563	rpusd1	81	56.800	ENSCCAG00000034385	RPUSD1	82	56.031	Cebus_capucinus
ENSPMAG00000001563	rpusd1	81	56.000	ENSCATG00000042983	RPUSD1	79	62.500	Cercocebus_atys
ENSPMAG00000001563	rpusd1	84	56.371	ENSCLAG00000013966	RPUSD1	84	56.371	Chinchilla_lanigera
ENSPMAG00000001563	rpusd1	81	56.000	ENSCSAG00000012121	RPUSD1	82	55.253	Chlorocebus_sabaeus
ENSPMAG00000001563	rpusd1	99	52.090	ENSCPBG00000021101	RPUSD1	85	56.977	Chrysemys_picta_bellii
ENSPMAG00000001563	rpusd1	81	56.000	ENSCANG00000028576	RPUSD1	89	56.000	Colobus_angolensis_palliatus
ENSPMAG00000001563	rpusd1	99	50.658	ENSCGRG00001014253	Rpusd1	83	56.746	Cricetulus_griseus_chok1gshd
ENSPMAG00000001563	rpusd1	99	50.658	ENSCGRG00000017995	Rpusd1	83	56.746	Cricetulus_griseus_crigri
ENSPMAG00000001563	rpusd1	100	55.410	ENSCSEG00000018512	rpusd1	100	53.074	Cynoglossus_semilaevis
ENSPMAG00000001563	rpusd1	99	53.595	ENSCVAG00000022746	rpusd1	99	52.961	Cyprinodon_variegatus
ENSPMAG00000001563	rpusd1	99	55.446	ENSDARG00000060192	rpusd1	99	54.125	Danio_rerio
ENSPMAG00000001563	rpusd1	81	58.000	ENSDNOG00000003721	RPUSD1	98	51.316	Dasypus_novemcinctus
ENSPMAG00000001563	rpusd1	84	57.915	ENSDORG00000026656	Rpusd1	85	57.915	Dipodomys_ordii
ENSPMAG00000001563	rpusd1	97	48.562	ENSEBUG00000008767	rpusd1	92	48.243	Eptatretus_burgeri
ENSPMAG00000001563	rpusd1	84	55.985	ENSEASG00005018421	RPUSD1	61	55.985	Equus_asinus_asinus
ENSPMAG00000001563	rpusd1	84	61.719	ENSELUG00000014307	rpusd1	89	55.375	Esox_lucius
ENSPMAG00000001563	rpusd1	99	54.426	ENSFCAG00000010359	RPUSD1	98	54.098	Felis_catus
ENSPMAG00000001563	rpusd1	99	53.311	ENSFALG00000003211	RPUSD1	99	51.757	Ficedula_albicollis
ENSPMAG00000001563	rpusd1	84	55.212	ENSFDAG00000013398	RPUSD1	84	55.212	Fukomys_damarensis
ENSPMAG00000001563	rpusd1	99	53.115	ENSFHEG00000004736	rpusd1	99	53.115	Fundulus_heteroclitus
ENSPMAG00000001563	rpusd1	86	59.316	ENSGMOG00000010756	rpusd1	99	53.595	Gadus_morhua
ENSPMAG00000001563	rpusd1	99	51.987	ENSGALG00000005315	RPUSD1	99	52.318	Gallus_gallus
ENSPMAG00000001563	rpusd1	99	53.618	ENSGAFG00000009886	rpusd1	99	54.605	Gambusia_affinis
ENSPMAG00000001563	rpusd1	84	61.176	ENSGACG00000014276	rpusd1	98	54.426	Gasterosteus_aculeatus
ENSPMAG00000001563	rpusd1	99	51.447	ENSGAGG00000004181	RPUSD1	99	50.482	Gopherus_agassizii
ENSPMAG00000001563	rpusd1	81	56.574	ENSGGOG00000013997	RPUSD1	79	61.538	Gorilla_gorilla
ENSPMAG00000001563	rpusd1	99	54.045	ENSHBUG00000023728	rpusd1	99	53.722	Haplochromis_burtoni
ENSPMAG00000001563	rpusd1	82	56.349	ENSHGLG00000002595	RPUSD1	82	56.349	Heterocephalus_glaber_female
ENSPMAG00000001563	rpusd1	82	56.349	ENSHGLG00100014303	RPUSD1	82	56.349	Heterocephalus_glaber_male
ENSPMAG00000001563	rpusd1	100	54.072	ENSHCOG00000002390	rpusd1	100	52.459	Hippocampus_comes
ENSPMAG00000001563	rpusd1	99	54.605	ENSIPUG00000001570	rpusd1	99	54.636	Ictalurus_punctatus
ENSPMAG00000001563	rpusd1	99	52.303	ENSSTOG00000004276	RPUSD1	84	58.077	Ictidomys_tridecemlineatus
ENSPMAG00000001563	rpusd1	84	57.588	ENSJJAG00000015696	Rpusd1	84	57.588	Jaculus_jaculus
ENSPMAG00000001563	rpusd1	98	52.333	ENSKMAG00000017287	rpusd1	97	52.667	Kryptolebias_marmoratus
ENSPMAG00000001563	rpusd1	99	54.397	ENSLBEG00000013354	RPUSD1	98	54.754	Labrus_bergylta
ENSPMAG00000001563	rpusd1	99	54.397	ENSLBEG00000022502	rpusd1	98	54.754	Labrus_bergylta
ENSPMAG00000001563	rpusd1	99	51.466	ENSLACG00000008869	RPUSD1	86	55.769	Latimeria_chalumnae
ENSPMAG00000001563	rpusd1	71	67.593	ENSLOCG00000005682	rpusd1	99	67.593	Lepisosteus_oculatus
ENSPMAG00000001563	rpusd1	99	50.658	ENSLAFG00000002115	RPUSD1	98	50.658	Loxodonta_africana
ENSPMAG00000001563	rpusd1	81	56.000	ENSMFAG00000003961	RPUSD1	79	62.500	Macaca_fascicularis
ENSPMAG00000001563	rpusd1	81	56.000	ENSMMUG00000000842	RPUSD1	79	62.500	Macaca_mulatta
ENSPMAG00000001563	rpusd1	81	56.000	ENSMNEG00000042712	RPUSD1	79	62.500	Macaca_nemestrina
ENSPMAG00000001563	rpusd1	81	56.000	ENSMLEG00000030591	RPUSD1	79	62.500	Mandrillus_leucophaeus
ENSPMAG00000001563	rpusd1	99	54.870	ENSMAMG00000004735	rpusd1	99	54.870	Mastacembelus_armatus
ENSPMAG00000001563	rpusd1	99	54.369	ENSMZEG00005003214	rpusd1	99	54.045	Maylandia_zebra
ENSPMAG00000001563	rpusd1	97	51.852	ENSMGAG00000005447	RPUSD1	99	51.852	Meleagris_gallopavo
ENSPMAG00000001563	rpusd1	82	51.587	ENSMAUG00000019998	Rpusd1	96	51.587	Mesocricetus_auratus
ENSPMAG00000001563	rpusd1	99	50.329	ENSMICG00000017561	RPUSD1	98	50.329	Microcebus_murinus
ENSPMAG00000001563	rpusd1	82	57.143	ENSMOCG00000014082	Rpusd1	98	50.654	Microtus_ochrogaster
ENSPMAG00000001563	rpusd1	80	63.115	ENSMMOG00000012569	rpusd1	100	54.045	Mola_mola
ENSPMAG00000001563	rpusd1	100	50.820	ENSMODG00000016882	RPUSD1	99	50.820	Monodelphis_domestica
ENSPMAG00000001563	rpusd1	99	52.922	ENSMALG00000017818	rpusd1	99	52.922	Monopterus_albus
ENSPMAG00000001563	rpusd1	82	57.143	MGP_CAROLIEiJ_G0021244	Rpusd1	98	50.980	Mus_caroli
ENSPMAG00000001563	rpusd1	82	57.143	ENSMUSG00000041199	Rpusd1	98	50.654	Mus_musculus
ENSPMAG00000001563	rpusd1	99	49.671	MGP_PahariEiJ_G0023562	Rpusd1	98	50.329	Mus_pahari
ENSPMAG00000001563	rpusd1	82	57.143	MGP_SPRETEiJ_G0022155	Rpusd1	98	50.654	Mus_spretus
ENSPMAG00000001563	rpusd1	84	57.915	ENSMPUG00000015897	RPUSD1	98	51.974	Mustela_putorius_furo
ENSPMAG00000001563	rpusd1	84	57.588	ENSMLUG00000001089	RPUSD1	82	57.588	Myotis_lucifugus
ENSPMAG00000001563	rpusd1	82	57.937	ENSNGAG00000003595	Rpusd1	82	57.937	Nannospalax_galili
ENSPMAG00000001563	rpusd1	99	55.263	ENSNBRG00000006457	rpusd1	99	54.045	Neolamprologus_brichardi
ENSPMAG00000001563	rpusd1	54	43.860	ENSNLEG00000008424	-	97	43.860	Nomascus_leucogenys
ENSPMAG00000001563	rpusd1	99	52.318	ENSMEUG00000016049	RPUSD1	79	60.759	Notamacropus_eugenii
ENSPMAG00000001563	rpusd1	99	47.039	ENSOPRG00000008340	RPUSD1	86	51.351	Ochotona_princeps
ENSPMAG00000001563	rpusd1	99	50.814	ENSODEG00000016945	RPUSD1	84	56.371	Octodon_degus
ENSPMAG00000001563	rpusd1	99	54.248	ENSONIG00000015672	rpusd1	99	54.248	Oreochromis_niloticus
ENSPMAG00000001563	rpusd1	99	53.094	ENSORLG00000013009	rpusd1	99	53.420	Oryzias_latipes
ENSPMAG00000001563	rpusd1	99	53.094	ENSORLG00020010382	rpusd1	99	51.974	Oryzias_latipes_hni
ENSPMAG00000001563	rpusd1	99	52.443	ENSORLG00015021354	rpusd1	99	52.769	Oryzias_latipes_hsok
ENSPMAG00000001563	rpusd1	99	52.131	ENSOMEG00000021426	rpusd1	99	52.303	Oryzias_melastigma
ENSPMAG00000001563	rpusd1	99	49.675	ENSOGAG00000003795	RPUSD1	82	55.985	Otolemur_garnettii
ENSPMAG00000001563	rpusd1	84	60.700	ENSOARG00000014254	RPUSD1	83	60.700	Ovis_aries
ENSPMAG00000001563	rpusd1	81	56.574	ENSPPAG00000034797	RPUSD1	79	61.538	Pan_paniscus
ENSPMAG00000001563	rpusd1	99	54.754	ENSPPRG00000012389	RPUSD1	98	54.098	Panthera_pardus
ENSPMAG00000001563	rpusd1	99	54.754	ENSPTIG00000008545	RPUSD1	99	50.685	Panthera_tigris_altaica
ENSPMAG00000001563	rpusd1	81	56.574	ENSPTRG00000007565	RPUSD1	79	61.538	Pan_troglodytes
ENSPMAG00000001563	rpusd1	81	56.000	ENSPANG00000024401	RPUSD1	79	62.500	Papio_anubis
ENSPMAG00000001563	rpusd1	100	54.369	ENSPKIG00000018890	rpusd1	76	61.417	Paramormyrops_kingsleyae
ENSPMAG00000001563	rpusd1	99	52.980	ENSPSIG00000013945	RPUSD1	99	52.980	Pelodiscus_sinensis
ENSPMAG00000001563	rpusd1	99	50.987	ENSPMGG00000014950	rpusd1	99	51.803	Periophthalmus_magnuspinnatus
ENSPMAG00000001563	rpusd1	82	57.143	ENSPEMG00000000497	Rpusd1	82	57.143	Peromyscus_maniculatus_bairdii
ENSPMAG00000001563	rpusd1	99	52.980	ENSPCIG00000021216	-	93	52.459	Phascolarctos_cinereus
ENSPMAG00000001563	rpusd1	99	54.605	ENSPFOG00000007946	rpusd1	99	53.618	Poecilia_formosa
ENSPMAG00000001563	rpusd1	99	54.605	ENSPLAG00000011925	rpusd1	99	53.618	Poecilia_latipinna
ENSPMAG00000001563	rpusd1	99	54.276	ENSPMEG00000002910	rpusd1	99	53.289	Poecilia_mexicana
ENSPMAG00000001563	rpusd1	99	54.605	ENSPREG00000019851	rpusd1	99	53.947	Poecilia_reticulata
ENSPMAG00000001563	rpusd1	99	41.254	ENSPCAG00000002258	RPUSD1	85	44.961	Procavia_capensis
ENSPMAG00000001563	rpusd1	99	50.325	ENSPCOG00000022582	RPUSD1	79	62.500	Propithecus_coquereli
ENSPMAG00000001563	rpusd1	84	54.615	ENSPVAG00000013104	RPUSD1	98	48.867	Pteropus_vampyrus
ENSPMAG00000001563	rpusd1	99	54.045	ENSPNYG00000024076	rpusd1	99	53.722	Pundamilia_nyererei
ENSPMAG00000001563	rpusd1	100	56.066	ENSPNAG00000013806	rpusd1	100	55.738	Pygocentrus_nattereri
ENSPMAG00000001563	rpusd1	82	57.143	ENSRNOG00000023639	Rpusd1	98	50.654	Rattus_norvegicus
ENSPMAG00000001563	rpusd1	81	56.000	ENSRBIG00000030238	RPUSD1	79	62.500	Rhinopithecus_bieti
ENSPMAG00000001563	rpusd1	81	56.000	ENSRROG00000036663	RPUSD1	79	62.500	Rhinopithecus_roxellana
ENSPMAG00000001563	rpusd1	81	58.167	ENSSBOG00000033063	RPUSD1	82	58.167	Saimiri_boliviensis_boliviensis
ENSPMAG00000001563	rpusd1	99	51.656	ENSSHAG00000013500	RPUSD1	99	51.148	Sarcophilus_harrisii
ENSPMAG00000001563	rpusd1	99	53.311	ENSSFOG00015014394	rpusd1	86	59.846	Scleropages_formosus
ENSPMAG00000001563	rpusd1	99	53.420	ENSSMAG00000008045	rpusd1	92	54.072	Scophthalmus_maximus
ENSPMAG00000001563	rpusd1	84	59.533	ENSSDUG00000001829	rpusd1	96	53.896	Seriola_dumerili
ENSPMAG00000001563	rpusd1	84	59.533	ENSSLDG00000020853	rpusd1	96	53.896	Seriola_lalandi_dorsalis
ENSPMAG00000001563	rpusd1	54	60.119	ENSSARG00000011187	-	100	60.119	Sorex_araneus
ENSPMAG00000001563	rpusd1	63	49.215	ENSSPUG00000005119	-	77	58.219	Sphenodon_punctatus
ENSPMAG00000001563	rpusd1	99	54.870	ENSSPAG00000012708	rpusd1	99	55.049	Stegastes_partitus
ENSPMAG00000001563	rpusd1	84	60.000	ENSSSCG00000008000	RPUSD1	100	58.935	Sus_scrofa
ENSPMAG00000001563	rpusd1	83	59.289	ENSTGUG00000015375	RPUSD1	99	59.289	Taeniopygia_guttata
ENSPMAG00000001563	rpusd1	99	54.870	ENSTRUG00000003041	rpusd1	98	54.369	Takifugu_rubripes
ENSPMAG00000001563	rpusd1	83	60.870	ENSTNIG00000002660	rpusd1	93	60.870	Tetraodon_nigroviridis
ENSPMAG00000001563	rpusd1	99	52.273	ENSTTRG00000010167	RPUSD1	82	59.073	Tursiops_truncatus
ENSPMAG00000001563	rpusd1	84	57.915	ENSUAMG00000012736	RPUSD1	98	52.303	Ursus_americanus
ENSPMAG00000001563	rpusd1	84	57.915	ENSUMAG00000021174	RPUSD1	98	52.303	Ursus_maritimus
ENSPMAG00000001563	rpusd1	99	52.961	ENSVVUG00000012357	RPUSD1	98	52.303	Vulpes_vulpes
ENSPMAG00000001563	rpusd1	99	54.636	ENSXETG00000007184	rpusd1	98	53.947	Xenopus_tropicalis
ENSPMAG00000001563	rpusd1	99	54.397	ENSXCOG00000017930	rpusd1	99	54.605	Xiphophorus_couchianus
ENSPMAG00000001563	rpusd1	99	54.072	ENSXMAG00000024084	rpusd1	99	54.276	Xiphophorus_maculatus