EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000002035 (Gene tree)
Gene ID: -
Gene Symbol: arf1
Alias: -
Full Name: ADP-ribosylation factor 1
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 3910 bases
Position: chrGL476946:28495-32404
Accession: ZDB-GENE-010724-5
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000002230	MMR_HSR1	PF01926.23	5.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000002241	-	811	-	ENSPMAP00000002230	180 (aa)	-	S4RAJ9

Gene Model

Click here to download ENSPMAG00000002035's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000002035's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000002035	arf1	93	58.621	ENSPMAG00000010222	ARF6	96	58.621
ENSPMAG00000002035	arf1	97	47.514	ENSPMAG00000010027	ARL4A	91	47.514
ENSPMAG00000002035	arf1	97	42.541	ENSPMAG00000010406	ARL4A	91	42.541
ENSPMAG00000002035	arf1	98	45.810	ENSPMAG00000009519	-	98	45.810
ENSPMAG00000002035	arf1	64	87.931	ENSPMAG00000005571	-	86	87.931
ENSPMAG00000002035	arf1	100	56.906	ENSPMAG00000002070	arl1	100	56.906
ENSPMAG00000002035	arf1	100	32.044	ENSPMAG00000007507	arl8ba	97	32.044
ENSPMAG00000002035	arf1	98	50.568	ENSPMAG00000006880	arl8	98	50.568
ENSPMAG00000002035	arf1	100	93.923	ENSPMAG00000000531	-	100	93.923
ENSPMAG00000002035	arf1	63	30.081	ENSPMAG00000001801	rab1ba	57	30.081
ENSPMAG00000002035	arf1	100	93.370	ENSPMAG00000003819	-	100	93.370
ENSPMAG00000002035	arf1	99	78.090	ENSPMAG00000009600	arf4a	98	78.090
ENSPMAG00000002035	arf1	98	44.068	ENSPMAG00000004724	arl2	96	44.068

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000002035	arf1	100	92.778	ENSACIG00000012192	-	100	92.778	Amphilophus_citrinellus
ENSPMAG00000002035	arf1	84	92.715	ENSAOCG00000001275	-	88	92.715	Amphiprion_ocellaris
ENSPMAG00000002035	arf1	100	92.778	ENSAPEG00000016909	-	100	92.778	Amphiprion_percula
ENSPMAG00000002035	arf1	100	93.333	ENSATEG00000003174	-	100	93.333	Anabas_testudineus
ENSPMAG00000002035	arf1	100	91.667	ENSACLG00000004123	-	100	91.667	Astatotilapia_calliptera
ENSPMAG00000002035	arf1	100	93.889	ENSAMXG00000019845	arf1	100	93.889	Astyanax_mexicanus
ENSPMAG00000002035	arf1	100	92.778	ENSCVAG00000013374	-	100	92.778	Cyprinodon_variegatus
ENSPMAG00000002035	arf1	100	93.889	ENSDARG00000009484	arf1	100	93.889	Danio_rerio
ENSPMAG00000002035	arf1	100	94.444	ENSELUG00000022533	arf1	79	94.444	Esox_lucius
ENSPMAG00000002035	arf1	100	92.222	ENSFHEG00000005859	-	100	92.222	Fundulus_heteroclitus
ENSPMAG00000002035	arf1	96	89.595	ENSGMOG00000000429	arf1	95	89.595	Gadus_morhua
ENSPMAG00000002035	arf1	100	92.778	ENSGAFG00000018151	-	100	92.778	Gambusia_affinis
ENSPMAG00000002035	arf1	100	85.556	ENSGACG00000014195	-	97	85.556	Gasterosteus_aculeatus
ENSPMAG00000002035	arf1	100	91.667	ENSHBUG00000002636	-	100	91.667	Haplochromis_burtoni
ENSPMAG00000002035	arf1	100	93.333	ENSIPUG00000006311	arf1	100	93.333	Ictalurus_punctatus
ENSPMAG00000002035	arf1	100	92.778	ENSKMAG00000018315	-	100	92.778	Kryptolebias_marmoratus
ENSPMAG00000002035	arf1	100	88.950	ENSLBEG00000023263	-	100	88.950	Labrus_bergylta
ENSPMAG00000002035	arf1	99	89.385	ENSLBEG00000001998	arf1	100	89.385	Labrus_bergylta
ENSPMAG00000002035	arf1	100	92.778	ENSMAMG00000001553	-	100	92.778	Mastacembelus_armatus
ENSPMAG00000002035	arf1	100	91.667	ENSMZEG00005022594	-	100	91.667	Maylandia_zebra
ENSPMAG00000002035	arf1	100	93.889	ENSMALG00000004269	-	100	93.889	Monopterus_albus
ENSPMAG00000002035	arf1	100	91.667	ENSNBRG00000016455	-	100	91.667	Neolamprologus_brichardi
ENSPMAG00000002035	arf1	100	91.667	ENSONIG00000001286	-	100	91.667	Oreochromis_niloticus
ENSPMAG00000002035	arf1	100	93.333	ENSORLG00000023270	-	100	93.333	Oryzias_latipes
ENSPMAG00000002035	arf1	100	92.778	ENSORLG00020006712	-	100	92.778	Oryzias_latipes_hni
ENSPMAG00000002035	arf1	100	93.333	ENSORLG00015019836	-	100	93.333	Oryzias_latipes_hsok
ENSPMAG00000002035	arf1	100	93.333	ENSOMEG00000023784	-	100	93.333	Oryzias_melastigma
ENSPMAG00000002035	arf1	100	88.333	ENSPMGG00000014174	arf1	99	91.228	Periophthalmus_magnuspinnatus
ENSPMAG00000002035	arf1	100	92.778	ENSPFOG00000014787	-	100	92.778	Poecilia_formosa
ENSPMAG00000002035	arf1	100	92.778	ENSPLAG00000001041	-	100	92.778	Poecilia_latipinna
ENSPMAG00000002035	arf1	100	92.778	ENSPMEG00000024077	-	100	92.778	Poecilia_mexicana
ENSPMAG00000002035	arf1	100	92.778	ENSPREG00000009009	-	100	92.778	Poecilia_reticulata
ENSPMAG00000002035	arf1	100	91.667	ENSPNYG00000009472	-	100	91.667	Pundamilia_nyererei
ENSPMAG00000002035	arf1	94	98.225	ENSPNAG00000000098	arf1	93	98.225	Pygocentrus_nattereri
ENSPMAG00000002035	arf1	96	79.070	YDL192W	-	95	79.070	Saccharomyces_cerevisiae
ENSPMAG00000002035	arf1	96	78.035	YDL137W	-	96	78.035	Saccharomyces_cerevisiae
ENSPMAG00000002035	arf1	100	89.444	ENSSMAG00000006125	-	100	89.444	Scophthalmus_maximus
ENSPMAG00000002035	arf1	100	92.778	ENSSDUG00000017356	-	100	92.778	Seriola_dumerili
ENSPMAG00000002035	arf1	100	92.778	ENSSLDG00000008504	-	100	92.778	Seriola_lalandi_dorsalis
ENSPMAG00000002035	arf1	100	93.333	ENSSPAG00000011431	-	100	93.333	Stegastes_partitus
ENSPMAG00000002035	arf1	100	93.333	ENSTRUG00000019870	-	100	93.333	Takifugu_rubripes
ENSPMAG00000002035	arf1	100	92.222	ENSTNIG00000011685	-	100	92.222	Tetraodon_nigroviridis
ENSPMAG00000002035	arf1	100	92.778	ENSXCOG00000016687	-	98	92.778	Xiphophorus_couchianus
ENSPMAG00000002035	arf1	100	92.778	ENSXMAG00000009193	-	98	95.294	Xiphophorus_maculatus