EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000002671 (Gene tree)
Gene ID: -
Gene Symbol: lsm1
Alias: -
Full Name: LSM1%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 3605 bases
Position: chrGL479362:62039-65643
Accession: ZDB-GENE-040801-68
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000002903	LSM	PF01423.22	2.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000002918	-	483	-	ENSPMAP00000002903	113 (aa)	-	S4RCH1

Gene Model

Click here to download ENSPMAG00000002671's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000002671's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000002671	lsm1	100	80.531	ENSG00000175324	LSM1	85	80.531	Homo_sapiens
ENSPMAG00000002671	lsm1	100	71.681	ENSAPOG00000010833	lsm1	85	71.681	Acanthochromis_polyacanthus
ENSPMAG00000002671	lsm1	100	80.531	ENSAMEG00000011141	LSM1	85	80.531	Ailuropoda_melanoleuca
ENSPMAG00000002671	lsm1	100	71.681	ENSAOCG00000017096	lsm1	85	71.681	Amphiprion_ocellaris
ENSPMAG00000002671	lsm1	100	71.681	ENSAOCG00000017997	-	85	71.681	Amphiprion_ocellaris
ENSPMAG00000002671	lsm1	100	71.681	ENSAPEG00000011669	lsm1	85	71.681	Amphiprion_percula
ENSPMAG00000002671	lsm1	100	72.566	ENSATEG00000022266	lsm1	85	72.566	Anabas_testudineus
ENSPMAG00000002671	lsm1	100	80.531	ENSANAG00000027785	LSM1	85	80.531	Aotus_nancymaae
ENSPMAG00000002671	lsm1	100	72.566	ENSACLG00000011400	lsm1	85	72.566	Astatotilapia_calliptera
ENSPMAG00000002671	lsm1	100	75.221	ENSAMXG00000005441	lsm1	85	75.221	Astyanax_mexicanus
ENSPMAG00000002671	lsm1	100	81.416	ENSBTAG00000001612	LSM1	85	81.416	Bos_taurus
ENSPMAG00000002671	lsm1	65	56.164	WBGene00003076	lsm-1	57	56.164	Caenorhabditis_elegans
ENSPMAG00000002671	lsm1	100	81.416	ENSCJAG00000048015	LSM1	85	81.416	Callithrix_jacchus
ENSPMAG00000002671	lsm1	100	80.531	ENSCAFG00000006113	LSM1	85	80.531	Canis_familiaris
ENSPMAG00000002671	lsm1	100	80.531	ENSCAFG00020001822	LSM1	85	80.531	Canis_lupus_dingo
ENSPMAG00000002671	lsm1	100	80.531	ENSCHIG00000013194	LSM1	85	80.531	Capra_hircus
ENSPMAG00000002671	lsm1	100	80.531	ENSTSYG00000010394	LSM1	85	80.531	Carlito_syrichta
ENSPMAG00000002671	lsm1	100	80.531	ENSCPOG00000032671	LSM1	85	80.531	Cavia_porcellus
ENSPMAG00000002671	lsm1	100	80.531	ENSCCAG00000037171	LSM1	85	80.531	Cebus_capucinus
ENSPMAG00000002671	lsm1	100	80.531	ENSCATG00000020377	LSM1	85	80.531	Cercocebus_atys
ENSPMAG00000002671	lsm1	100	78.761	ENSCLAG00000001137	LSM1	85	78.761	Chinchilla_lanigera
ENSPMAG00000002671	lsm1	100	80.531	ENSCSAG00000015485	LSM1	85	80.531	Chlorocebus_sabaeus
ENSPMAG00000002671	lsm1	100	80.531	ENSCHOG00000006030	LSM1	85	80.531	Choloepus_hoffmanni
ENSPMAG00000002671	lsm1	100	79.646	ENSCPBG00000006569	LSM1	76	79.646	Chrysemys_picta_bellii
ENSPMAG00000002671	lsm1	99	64.286	ENSCING00000013536	-	84	64.286	Ciona_intestinalis
ENSPMAG00000002671	lsm1	100	80.531	ENSCANG00000019173	LSM1	85	80.531	Colobus_angolensis_palliatus
ENSPMAG00000002671	lsm1	100	79.646	ENSCGRG00001024560	-	85	79.646	Cricetulus_griseus_chok1gshd
ENSPMAG00000002671	lsm1	82	70.408	ENSCGRG00001002259	-	85	70.408	Cricetulus_griseus_chok1gshd
ENSPMAG00000002671	lsm1	82	70.408	ENSCGRG00000013603	-	85	70.408	Cricetulus_griseus_crigri
ENSPMAG00000002671	lsm1	100	79.646	ENSCGRG00000006554	-	85	79.646	Cricetulus_griseus_crigri
ENSPMAG00000002671	lsm1	100	72.566	ENSCSEG00000010570	lsm1	78	72.566	Cynoglossus_semilaevis
ENSPMAG00000002671	lsm1	100	72.566	ENSCSEG00000008319	lsm1	78	72.566	Cynoglossus_semilaevis
ENSPMAG00000002671	lsm1	100	71.681	ENSCVAG00000003871	lsm1	85	71.681	Cyprinodon_variegatus
ENSPMAG00000002671	lsm1	100	74.336	ENSDARG00000043177	lsm1	85	74.336	Danio_rerio
ENSPMAG00000002671	lsm1	100	80.531	ENSDNOG00000032911	-	85	80.531	Dasypus_novemcinctus
ENSPMAG00000002671	lsm1	99	75.000	ENSDNOG00000030989	-	84	75.000	Dasypus_novemcinctus
ENSPMAG00000002671	lsm1	100	80.531	ENSDNOG00000046387	-	85	80.531	Dasypus_novemcinctus
ENSPMAG00000002671	lsm1	87	64.286	ENSDNOG00000046620	-	82	64.286	Dasypus_novemcinctus
ENSPMAG00000002671	lsm1	100	80.531	ENSDORG00000028172	Lsm1	85	80.531	Dipodomys_ordii
ENSPMAG00000002671	lsm1	100	62.832	FBgn0261067	LSm1	82	62.832	Drosophila_melanogaster
ENSPMAG00000002671	lsm1	100	80.531	ENSEASG00005016677	LSM1	85	80.531	Equus_asinus_asinus
ENSPMAG00000002671	lsm1	100	80.531	ENSECAG00000010461	LSM1	85	80.531	Equus_caballus
ENSPMAG00000002671	lsm1	50	96.491	ENSEEUG00000015181	LSM1	58	96.491	Erinaceus_europaeus
ENSPMAG00000002671	lsm1	100	75.221	ENSELUG00000002322	lsm1	85	75.221	Esox_lucius
ENSPMAG00000002671	lsm1	100	76.106	ENSELUG00000023374	lsm1	85	76.106	Esox_lucius
ENSPMAG00000002671	lsm1	100	80.531	ENSFCAG00000039335	LSM1	85	80.531	Felis_catus
ENSPMAG00000002671	lsm1	100	80.531	ENSFALG00000006723	LSM1	96	80.531	Ficedula_albicollis
ENSPMAG00000002671	lsm1	100	80.531	ENSFDAG00000007658	LSM1	85	80.531	Fukomys_damarensis
ENSPMAG00000002671	lsm1	100	71.681	ENSFHEG00000009556	lsm1	85	71.681	Fundulus_heteroclitus
ENSPMAG00000002671	lsm1	100	71.681	ENSGMOG00000016651	lsm1	83	71.681	Gadus_morhua
ENSPMAG00000002671	lsm1	100	79.646	ENSGALG00000003245	LSM1	85	79.646	Gallus_gallus
ENSPMAG00000002671	lsm1	100	71.681	ENSGAFG00000011355	lsm1	85	71.681	Gambusia_affinis
ENSPMAG00000002671	lsm1	100	72.566	ENSGACG00000011763	lsm1	83	72.566	Gasterosteus_aculeatus
ENSPMAG00000002671	lsm1	100	79.646	ENSGAGG00000024065	LSM1	85	79.646	Gopherus_agassizii
ENSPMAG00000002671	lsm1	100	80.531	ENSGGOG00000022658	LSM1	85	80.531	Gorilla_gorilla
ENSPMAG00000002671	lsm1	100	72.566	ENSHBUG00000010897	lsm1	85	72.566	Haplochromis_burtoni
ENSPMAG00000002671	lsm1	100	80.531	ENSHGLG00000005711	LSM1	85	80.531	Heterocephalus_glaber_female
ENSPMAG00000002671	lsm1	97	70.909	ENSHGLG00000017574	-	93	70.909	Heterocephalus_glaber_female
ENSPMAG00000002671	lsm1	97	70.909	ENSHGLG00100012152	-	93	70.909	Heterocephalus_glaber_male
ENSPMAG00000002671	lsm1	100	80.531	ENSHGLG00100017660	LSM1	85	80.531	Heterocephalus_glaber_male
ENSPMAG00000002671	lsm1	100	72.566	ENSHCOG00000017233	lsm1	85	72.566	Hippocampus_comes
ENSPMAG00000002671	lsm1	100	73.451	ENSIPUG00000002312	LSM1	85	73.451	Ictalurus_punctatus
ENSPMAG00000002671	lsm1	50	96.491	ENSSTOG00000026870	LSM1	70	96.491	Ictidomys_tridecemlineatus
ENSPMAG00000002671	lsm1	100	80.531	ENSJJAG00000014605	-	85	80.531	Jaculus_jaculus
ENSPMAG00000002671	lsm1	100	72.566	ENSKMAG00000003016	lsm1	85	72.566	Kryptolebias_marmoratus
ENSPMAG00000002671	lsm1	100	72.566	ENSLBEG00000022352	lsm1	85	72.566	Labrus_bergylta
ENSPMAG00000002671	lsm1	100	82.301	ENSLACG00000010947	LSM1	93	82.301	Latimeria_chalumnae
ENSPMAG00000002671	lsm1	100	79.646	ENSLOCG00000015149	lsm1	85	79.646	Lepisosteus_oculatus
ENSPMAG00000002671	lsm1	100	80.531	ENSLAFG00000003534	LSM1	85	80.531	Loxodonta_africana
ENSPMAG00000002671	lsm1	100	80.531	ENSMFAG00000032661	LSM1	85	80.531	Macaca_fascicularis
ENSPMAG00000002671	lsm1	100	80.531	ENSMLEG00000034535	LSM1	85	80.531	Mandrillus_leucophaeus
ENSPMAG00000002671	lsm1	100	72.566	ENSMAMG00000007464	lsm1	85	72.566	Mastacembelus_armatus
ENSPMAG00000002671	lsm1	100	72.566	ENSMZEG00005010321	lsm1	85	72.566	Maylandia_zebra
ENSPMAG00000002671	lsm1	100	79.646	ENSMGAG00000002125	LSM1	85	79.646	Meleagris_gallopavo
ENSPMAG00000002671	lsm1	100	80.531	ENSMICG00000030726	LSM1	85	80.531	Microcebus_murinus
ENSPMAG00000002671	lsm1	100	79.646	ENSMOCG00000022817	Lsm1	85	79.646	Microtus_ochrogaster
ENSPMAG00000002671	lsm1	100	71.681	ENSMMOG00000015466	lsm1	85	71.681	Mola_mola
ENSPMAG00000002671	lsm1	100	80.531	ENSMODG00000010732	-	85	80.531	Monodelphis_domestica
ENSPMAG00000002671	lsm1	50	89.474	ENSMALG00000001478	lsm1	61	89.474	Monopterus_albus
ENSPMAG00000002671	lsm1	100	77.876	MGP_CAROLIEiJ_G0030930	Lsm1	85	77.876	Mus_caroli
ENSPMAG00000002671	lsm1	100	77.876	ENSMUSG00000037296	Lsm1	85	77.876	Mus_musculus
ENSPMAG00000002671	lsm1	100	77.876	MGP_PahariEiJ_G0021400	Lsm1	85	77.876	Mus_pahari
ENSPMAG00000002671	lsm1	100	77.876	MGP_SPRETEiJ_G0032049	Lsm1	85	77.876	Mus_spretus
ENSPMAG00000002671	lsm1	100	80.531	ENSMPUG00000009883	LSM1	85	80.531	Mustela_putorius_furo
ENSPMAG00000002671	lsm1	100	79.646	ENSMLUG00000003734	LSM1	85	79.646	Myotis_lucifugus
ENSPMAG00000002671	lsm1	100	79.646	ENSNGAG00000003753	Lsm1	85	79.646	Nannospalax_galili
ENSPMAG00000002671	lsm1	100	80.531	ENSNLEG00000029390	LSM1	85	80.531	Nomascus_leucogenys
ENSPMAG00000002671	lsm1	100	80.531	ENSMEUG00000014077	LSM1	85	80.531	Notamacropus_eugenii
ENSPMAG00000002671	lsm1	100	79.646	ENSOPRG00000000333	LSM1	97	79.646	Ochotona_princeps
ENSPMAG00000002671	lsm1	100	80.531	ENSODEG00000004834	LSM1	85	80.531	Octodon_degus
ENSPMAG00000002671	lsm1	100	72.566	ENSONIG00000010782	lsm1	85	72.566	Oreochromis_niloticus
ENSPMAG00000002671	lsm1	100	80.531	ENSOANG00000003256	LSM1	85	80.531	Ornithorhynchus_anatinus
ENSPMAG00000002671	lsm1	100	80.531	ENSOCUG00000015399	LSM1	85	80.531	Oryctolagus_cuniculus
ENSPMAG00000002671	lsm1	100	73.451	ENSORLG00000030288	lsm1	85	73.451	Oryzias_latipes
ENSPMAG00000002671	lsm1	100	73.451	ENSORLG00020003941	lsm1	85	73.451	Oryzias_latipes_hni
ENSPMAG00000002671	lsm1	100	71.681	ENSORLG00020006213	-	73	71.681	Oryzias_latipes_hni
ENSPMAG00000002671	lsm1	100	73.451	ENSORLG00015018350	lsm1	85	73.451	Oryzias_latipes_hsok
ENSPMAG00000002671	lsm1	100	72.566	ENSOMEG00000012454	lsm1	85	72.566	Oryzias_melastigma
ENSPMAG00000002671	lsm1	100	80.531	ENSOGAG00000015161	LSM1	85	80.531	Otolemur_garnettii
ENSPMAG00000002671	lsm1	100	80.531	ENSOARG00000001317	LSM1	85	80.531	Ovis_aries
ENSPMAG00000002671	lsm1	100	80.531	ENSPPAG00000032279	LSM1	85	80.531	Pan_paniscus
ENSPMAG00000002671	lsm1	100	80.531	ENSPPRG00000014172	-	85	80.531	Panthera_pardus
ENSPMAG00000002671	lsm1	100	80.531	ENSPTIG00000010289	LSM1	85	80.531	Panthera_tigris_altaica
ENSPMAG00000002671	lsm1	100	80.531	ENSPTRG00000020169	LSM1	85	80.531	Pan_troglodytes
ENSPMAG00000002671	lsm1	100	80.531	ENSPANG00000008814	LSM1	85	80.531	Papio_anubis
ENSPMAG00000002671	lsm1	100	76.106	ENSPKIG00000019409	LSM1	84	76.106	Paramormyrops_kingsleyae
ENSPMAG00000002671	lsm1	100	76.991	ENSPKIG00000001839	lsm1	85	76.991	Paramormyrops_kingsleyae
ENSPMAG00000002671	lsm1	100	79.646	ENSPSIG00000012563	LSM1	87	79.646	Pelodiscus_sinensis
ENSPMAG00000002671	lsm1	50	89.474	ENSPMGG00000022999	lsm1	54	89.474	Periophthalmus_magnuspinnatus
ENSPMAG00000002671	lsm1	100	79.646	ENSPCIG00000008880	LSM1	85	79.646	Phascolarctos_cinereus
ENSPMAG00000002671	lsm1	100	71.681	ENSPFOG00000016029	lsm1	85	71.681	Poecilia_formosa
ENSPMAG00000002671	lsm1	100	71.681	ENSPLAG00000007879	lsm1	85	71.681	Poecilia_latipinna
ENSPMAG00000002671	lsm1	100	71.681	ENSPMEG00000023550	lsm1	85	71.681	Poecilia_mexicana
ENSPMAG00000002671	lsm1	100	71.681	ENSPREG00000009574	lsm1	85	71.681	Poecilia_reticulata
ENSPMAG00000002671	lsm1	100	80.531	ENSPPYG00000018521	LSM1	85	80.531	Pongo_abelii
ENSPMAG00000002671	lsm1	100	80.531	ENSPCOG00000020901	-	85	80.531	Propithecus_coquereli
ENSPMAG00000002671	lsm1	100	80.531	ENSPVAG00000006016	LSM1	85	80.531	Pteropus_vampyrus
ENSPMAG00000002671	lsm1	100	72.566	ENSPNYG00000018067	lsm1	85	72.566	Pundamilia_nyererei
ENSPMAG00000002671	lsm1	100	74.336	ENSPNAG00000013707	lsm1	85	74.336	Pygocentrus_nattereri
ENSPMAG00000002671	lsm1	100	78.761	ENSRNOG00000015375	Lsm1	85	78.761	Rattus_norvegicus
ENSPMAG00000002671	lsm1	100	80.531	ENSRBIG00000027449	LSM1	85	80.531	Rhinopithecus_bieti
ENSPMAG00000002671	lsm1	100	80.531	ENSRROG00000036074	LSM1	85	80.531	Rhinopithecus_roxellana
ENSPMAG00000002671	lsm1	85	48.039	YJL124C	LSM1	59	48.039	Saccharomyces_cerevisiae
ENSPMAG00000002671	lsm1	100	80.531	ENSSHAG00000017260	LSM1	85	80.531	Sarcophilus_harrisii
ENSPMAG00000002671	lsm1	100	78.761	ENSSFOG00015019528	lsm1	85	78.761	Scleropages_formosus
ENSPMAG00000002671	lsm1	100	72.566	ENSSMAG00000004930	lsm1	85	72.566	Scophthalmus_maximus
ENSPMAG00000002671	lsm1	100	72.566	ENSSDUG00000021823	lsm1	85	72.566	Seriola_dumerili
ENSPMAG00000002671	lsm1	100	72.566	ENSSLDG00000012154	lsm1	85	72.566	Seriola_lalandi_dorsalis
ENSPMAG00000002671	lsm1	100	79.646	ENSSPUG00000014878	LSM1	85	79.646	Sphenodon_punctatus
ENSPMAG00000002671	lsm1	100	72.566	ENSSPAG00000020548	lsm1	85	72.566	Stegastes_partitus
ENSPMAG00000002671	lsm1	100	79.646	ENSSSCG00000039058	LSM1	85	79.646	Sus_scrofa
ENSPMAG00000002671	lsm1	100	79.646	ENSTGUG00000004793	LSM1	85	79.646	Taeniopygia_guttata
ENSPMAG00000002671	lsm1	100	74.336	ENSTRUG00000025239	lsm1	85	74.336	Takifugu_rubripes
ENSPMAG00000002671	lsm1	100	75.221	ENSTNIG00000004055	lsm1	85	75.221	Tetraodon_nigroviridis
ENSPMAG00000002671	lsm1	100	78.761	ENSTBEG00000015884	LSM1	97	78.761	Tupaia_belangeri
ENSPMAG00000002671	lsm1	100	80.531	ENSTTRG00000004482	LSM1	85	80.531	Tursiops_truncatus
ENSPMAG00000002671	lsm1	100	80.531	ENSUAMG00000004103	LSM1	85	80.531	Ursus_americanus
ENSPMAG00000002671	lsm1	100	80.531	ENSUMAG00000009132	LSM1	85	80.531	Ursus_maritimus
ENSPMAG00000002671	lsm1	50	96.491	ENSVPAG00000011593	LSM1	75	96.491	Vicugna_pacos
ENSPMAG00000002671	lsm1	54	65.574	ENSVVUG00000014880	-	65	65.574	Vulpes_vulpes
ENSPMAG00000002671	lsm1	100	80.531	ENSVVUG00000020191	LSM1	85	80.531	Vulpes_vulpes
ENSPMAG00000002671	lsm1	100	77.778	ENSXETG00000009004	lsm1	85	77.778	Xenopus_tropicalis
ENSPMAG00000002671	lsm1	100	71.681	ENSXCOG00000015631	lsm1	85	71.681	Xiphophorus_couchianus
ENSPMAG00000002671	lsm1	100	71.681	ENSXMAG00000026637	lsm1	85	71.681	Xiphophorus_maculatus