EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000002975 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 29006 bases
Position: chrGL477403:47645-76650
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000003250	XRN_N	PF03159.18	5.1e-84	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000003265	-	3492	-	ENSPMAP00000003250	1164 (aa)	-	S4RDG8

Gene Model

Click here to download ENSPMAG00000002975's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000002975's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000002975	xrn1	91	78.161	ENSG00000114127	XRN1	99	71.856	Homo_sapiens
ENSPMAG00000002975	xrn1	90	76.724	ENSAPOG00000000622	xrn1	93	52.741	Acanthochromis_polyacanthus
ENSPMAG00000002975	xrn1	91	77.586	ENSAMEG00000012538	XRN1	64	50.126	Ailuropoda_melanoleuca
ENSPMAG00000002975	xrn1	99	48.992	ENSACIG00000001057	xrn1	68	51.092	Amphilophus_citrinellus
ENSPMAG00000002975	xrn1	90	77.299	ENSAOCG00000014097	xrn1	83	69.463	Amphiprion_ocellaris
ENSPMAG00000002975	xrn1	90	77.299	ENSAPEG00000006620	xrn1	71	51.174	Amphiprion_percula
ENSPMAG00000002975	xrn1	90	72.779	ENSATEG00000009752	xrn1	67	72.779	Anabas_testudineus
ENSPMAG00000002975	xrn1	99	49.281	ENSAPLG00000004905	XRN1	64	51.648	Anas_platyrhynchos
ENSPMAG00000002975	xrn1	99	50.042	ENSACAG00000004985	XRN1	62	50.042	Anolis_carolinensis
ENSPMAG00000002975	xrn1	91	78.448	ENSANAG00000029013	XRN1	97	52.832	Aotus_nancymaae
ENSPMAG00000002975	xrn1	99	49.285	ENSACLG00000004806	xrn1	65	51.304	Astatotilapia_calliptera
ENSPMAG00000002975	xrn1	87	75.862	ENSAMXG00000019370	xrn1	75	88.889	Astyanax_mexicanus
ENSPMAG00000002975	xrn1	91	77.874	ENSBTAG00000011524	XRN1	65	50.211	Bos_taurus
ENSPMAG00000002975	xrn1	100	38.308	WBGene00012730	xrn-1	74	38.277	Caenorhabditis_elegans
ENSPMAG00000002975	xrn1	91	78.161	ENSCJAG00000001872	XRN1	68	50.464	Callithrix_jacchus
ENSPMAG00000002975	xrn1	91	78.736	ENSCAFG00000007783	XRN1	65	52.313	Canis_familiaris
ENSPMAG00000002975	xrn1	91	78.736	ENSCAFG00020009120	XRN1	93	52.221	Canis_lupus_dingo
ENSPMAG00000002975	xrn1	91	78.448	ENSCHIG00000019192	XRN1	64	50.294	Capra_hircus
ENSPMAG00000002975	xrn1	91	78.448	ENSTSYG00000002705	XRN1	65	50.422	Carlito_syrichta
ENSPMAG00000002975	xrn1	54	67.845	ENSCAPG00000004604	-	74	67.845	Cavia_aperea
ENSPMAG00000002975	xrn1	91	78.448	ENSCCAG00000034800	XRN1	93	57.450	Cebus_capucinus
ENSPMAG00000002975	xrn1	91	78.448	ENSCATG00000041794	XRN1	65	50.717	Cercocebus_atys
ENSPMAG00000002975	xrn1	91	78.448	ENSCLAG00000001451	XRN1	83	56.289	Chinchilla_lanigera
ENSPMAG00000002975	xrn1	91	78.448	ENSCSAG00000011265	XRN1	65	50.886	Chlorocebus_sabaeus
ENSPMAG00000002975	xrn1	91	69.429	ENSCSAVG00000008584	-	82	69.429	Ciona_savignyi
ENSPMAG00000002975	xrn1	91	78.448	ENSCANG00000037495	XRN1	93	57.450	Colobus_angolensis_palliatus
ENSPMAG00000002975	xrn1	91	78.161	ENSCGRG00001019411	Xrn1	92	58.962	Cricetulus_griseus_chok1gshd
ENSPMAG00000002975	xrn1	91	78.161	ENSCGRG00000012464	Xrn1	92	58.962	Cricetulus_griseus_crigri
ENSPMAG00000002975	xrn1	99	46.323	ENSCSEG00000021285	xrn1	72	90.000	Cynoglossus_semilaevis
ENSPMAG00000002975	xrn1	90	76.724	ENSCVAG00000013089	xrn1	96	76.724	Cyprinodon_variegatus
ENSPMAG00000002975	xrn1	99	53.085	ENSDARG00000091652	xrn1	98	57.439	Danio_rerio
ENSPMAG00000002975	xrn1	91	77.810	ENSDORG00000013833	Xrn1	65	50.295	Dipodomys_ordii
ENSPMAG00000002975	xrn1	90	59.884	FBgn0020261	pcm	63	59.884	Drosophila_melanogaster
ENSPMAG00000002975	xrn1	91	78.448	ENSEASG00005002687	XRN1	79	78.448	Equus_asinus_asinus
ENSPMAG00000002975	xrn1	91	78.448	ENSECAG00000008301	XRN1	65	50.337	Equus_caballus
ENSPMAG00000002975	xrn1	90	78.161	ENSELUG00000000169	xrn1	64	51.710	Esox_lucius
ENSPMAG00000002975	xrn1	91	68.966	ENSFCAG00000027589	XRN1	75	77.874	Felis_catus
ENSPMAG00000002975	xrn1	92	76.724	ENSFALG00000007021	XRN1	62	50.588	Ficedula_albicollis
ENSPMAG00000002975	xrn1	91	77.874	ENSFDAG00000020494	XRN1	92	58.962	Fukomys_damarensis
ENSPMAG00000002975	xrn1	90	78.161	ENSGMOG00000006396	xrn1	63	78.161	Gadus_morhua
ENSPMAG00000002975	xrn1	99	49.451	ENSGALG00000002706	XRN1	62	51.814	Gallus_gallus
ENSPMAG00000002975	xrn1	90	76.149	ENSGACG00000014328	xrn1	64	48.538	Gasterosteus_aculeatus
ENSPMAG00000002975	xrn1	99	49.071	ENSGAGG00000017535	XRN1	67	51.098	Gopherus_agassizii
ENSPMAG00000002975	xrn1	91	77.874	ENSGGOG00000008047	XRN1	65	50.380	Gorilla_gorilla
ENSPMAG00000002975	xrn1	99	49.916	ENSHBUG00000005908	xrn1	97	51.934	Haplochromis_burtoni
ENSPMAG00000002975	xrn1	91	78.448	ENSHGLG00000014476	XRN1	92	56.132	Heterocephalus_glaber_female
ENSPMAG00000002975	xrn1	91	78.448	ENSHGLG00100015130	XRN1	92	56.132	Heterocephalus_glaber_male
ENSPMAG00000002975	xrn1	99	48.379	ENSHCOG00000014062	xrn1	70	50.042	Hippocampus_comes
ENSPMAG00000002975	xrn1	99	50.970	ENSIPUG00000015229	xrn1	66	52.192	Ictalurus_punctatus
ENSPMAG00000002975	xrn1	91	78.736	ENSSTOG00000013552	XRN1	93	55.675	Ictidomys_tridecemlineatus
ENSPMAG00000002975	xrn1	91	78.035	ENSJJAG00000010863	Xrn1	94	56.378	Jaculus_jaculus
ENSPMAG00000002975	xrn1	90	76.437	ENSKMAG00000021356	xrn1	94	50.187	Kryptolebias_marmoratus
ENSPMAG00000002975	xrn1	90	76.149	ENSLBEG00000018656	xrn1	75	91.139	Labrus_bergylta
ENSPMAG00000002975	xrn1	91	78.448	ENSLACG00000009020	XRN1	61	78.448	Latimeria_chalumnae
ENSPMAG00000002975	xrn1	99	50.126	ENSLOCG00000007944	xrn1	64	51.883	Lepisosteus_oculatus
ENSPMAG00000002975	xrn1	85	78.161	ENSLAFG00000015426	XRN1	94	57.143	Loxodonta_africana
ENSPMAG00000002975	xrn1	91	78.448	ENSMFAG00000032599	XRN1	65	50.717	Macaca_fascicularis
ENSPMAG00000002975	xrn1	91	78.448	ENSMMUG00000014038	XRN1	65	50.886	Macaca_mulatta
ENSPMAG00000002975	xrn1	91	78.736	ENSMNEG00000034217	XRN1	65	50.970	Macaca_nemestrina
ENSPMAG00000002975	xrn1	90	77.586	ENSMAMG00000013219	xrn1	94	53.945	Mastacembelus_armatus
ENSPMAG00000002975	xrn1	99	49.201	ENSMZEG00005015099	xrn1	65	51.220	Maylandia_zebra
ENSPMAG00000002975	xrn1	99	47.819	ENSMGAG00000006333	XRN1	64	50.168	Meleagris_gallopavo
ENSPMAG00000002975	xrn1	91	78.161	ENSMICG00000048948	XRN1	74	88.608	Microcebus_murinus
ENSPMAG00000002975	xrn1	82	55.818	ENSMOCG00000008665	Xrn1	92	58.631	Microtus_ochrogaster
ENSPMAG00000002975	xrn1	91	77.299	ENSMODG00000021236	XRN1	65	50.084	Monodelphis_domestica
ENSPMAG00000002975	xrn1	90	76.437	ENSMALG00000004098	xrn1	65	76.437	Monopterus_albus
ENSPMAG00000002975	xrn1	83	77.874	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSPMAG00000002975	xrn1	91	78.161	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSPMAG00000002975	xrn1	91	78.161	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSPMAG00000002975	xrn1	91	78.161	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSPMAG00000002975	xrn1	91	78.161	ENSMPUG00000012040	XRN1	65	50.379	Mustela_putorius_furo
ENSPMAG00000002975	xrn1	91	78.448	ENSMLUG00000016885	XRN1	64	51.055	Myotis_lucifugus
ENSPMAG00000002975	xrn1	73	71.839	ENSNGAG00000023964	Xrn1	92	52.747	Nannospalax_galili
ENSPMAG00000002975	xrn1	91	78.448	ENSNLEG00000004726	XRN1	65	50.549	Nomascus_leucogenys
ENSPMAG00000002975	xrn1	99	49.411	ENSONIG00000016673	xrn1	73	51.431	Oreochromis_niloticus
ENSPMAG00000002975	xrn1	90	45.818	ENSOANG00000006735	XRN1	63	47.495	Ornithorhynchus_anatinus
ENSPMAG00000002975	xrn1	91	78.448	ENSOCUG00000001861	XRN1	63	50.759	Oryctolagus_cuniculus
ENSPMAG00000002975	xrn1	99	50.549	ENSORLG00000013005	xrn1	67	52.277	Oryzias_latipes
ENSPMAG00000002975	xrn1	99	50.380	ENSORLG00020005559	xrn1	65	52.445	Oryzias_latipes_hni
ENSPMAG00000002975	xrn1	99	50.296	ENSORLG00015022523	xrn1	70	50.253	Oryzias_latipes_hsok
ENSPMAG00000002975	xrn1	99	49.916	ENSOMEG00000015397	xrn1	70	51.852	Oryzias_melastigma
ENSPMAG00000002975	xrn1	91	78.448	ENSOGAG00000000170	XRN1	65	48.820	Otolemur_garnettii
ENSPMAG00000002975	xrn1	91	78.161	ENSOARG00000006343	XRN1	65	50.210	Ovis_aries
ENSPMAG00000002975	xrn1	91	77.874	ENSPPAG00000010180	XRN1	65	50.549	Pan_paniscus
ENSPMAG00000002975	xrn1	91	77.874	ENSPPRG00000007125	XRN1	65	50.591	Panthera_pardus
ENSPMAG00000002975	xrn1	91	77.874	ENSPTIG00000021081	XRN1	65	50.591	Panthera_tigris_altaica
ENSPMAG00000002975	xrn1	91	77.874	ENSPTRG00000015482	XRN1	65	50.549	Pan_troglodytes
ENSPMAG00000002975	xrn1	91	78.448	ENSPANG00000010638	XRN1	65	50.717	Papio_anubis
ENSPMAG00000002975	xrn1	90	78.223	ENSPSIG00000018050	XRN1	63	52.064	Pelodiscus_sinensis
ENSPMAG00000002975	xrn1	67	77.586	ENSPMGG00000002648	xrn1	84	53.858	Periophthalmus_magnuspinnatus
ENSPMAG00000002975	xrn1	73	78.448	ENSPEMG00000020610	Xrn1	92	56.604	Peromyscus_maniculatus_bairdii
ENSPMAG00000002975	xrn1	91	77.586	ENSPCIG00000028735	XRN1	93	57.604	Phascolarctos_cinereus
ENSPMAG00000002975	xrn1	90	77.011	ENSPFOG00000013932	xrn1	72	49.118	Poecilia_formosa
ENSPMAG00000002975	xrn1	90	77.011	ENSPLAG00000021653	xrn1	71	48.949	Poecilia_latipinna
ENSPMAG00000002975	xrn1	90	77.011	ENSPMEG00000003076	xrn1	70	49.038	Poecilia_mexicana
ENSPMAG00000002975	xrn1	90	76.437	ENSPREG00000021147	xrn1	68	49.242	Poecilia_reticulata
ENSPMAG00000002975	xrn1	91	78.448	ENSPPYG00000014172	XRN1	65	50.886	Pongo_abelii
ENSPMAG00000002975	xrn1	86	77.233	ENSPCAG00000005638	XRN1	68	54.860	Procavia_capensis
ENSPMAG00000002975	xrn1	91	78.161	ENSPCOG00000013089	XRN1	93	55.368	Propithecus_coquereli
ENSPMAG00000002975	xrn1	89	77.778	ENSPVAG00000016265	XRN1	61	77.778	Pteropus_vampyrus
ENSPMAG00000002975	xrn1	99	51.094	ENSPNYG00000010570	xrn1	66	51.094	Pundamilia_nyererei
ENSPMAG00000002975	xrn1	78	75.287	ENSPNAG00000023531	xrn1	59	61.883	Pygocentrus_nattereri
ENSPMAG00000002975	xrn1	91	78.161	ENSRNOG00000042951	Xrn1	64	50.377	Rattus_norvegicus
ENSPMAG00000002975	xrn1	91	78.448	ENSRBIG00000041227	XRN1	65	50.802	Rhinopithecus_bieti
ENSPMAG00000002975	xrn1	91	53.143	YGL173C	XRN1	68	53.143	Saccharomyces_cerevisiae
ENSPMAG00000002975	xrn1	91	78.736	ENSSBOG00000029561	XRN1	65	50.802	Saimiri_boliviensis_boliviensis
ENSPMAG00000002975	xrn1	91	77.522	ENSSHAG00000016207	XRN1	66	50.253	Sarcophilus_harrisii
ENSPMAG00000002975	xrn1	99	50.251	ENSSFOG00015024211	xrn1	67	51.340	Scleropages_formosus
ENSPMAG00000002975	xrn1	99	51.213	ENSSMAG00000016534	xrn1	69	51.213	Scophthalmus_maximus
ENSPMAG00000002975	xrn1	99	48.441	ENSSDUG00000010306	xrn1	70	48.526	Seriola_dumerili
ENSPMAG00000002975	xrn1	99	48.569	ENSSLDG00000021543	xrn1	70	49.579	Seriola_lalandi_dorsalis
ENSPMAG00000002975	xrn1	79	77.233	ENSSARG00000007741	-	71	45.793	Sorex_araneus
ENSPMAG00000002975	xrn1	92	77.011	ENSTGUG00000008498	XRN1	65	50.717	Taeniopygia_guttata
ENSPMAG00000002975	xrn1	90	77.299	ENSTRUG00000004895	xrn1	99	52.022	Takifugu_rubripes
ENSPMAG00000002975	xrn1	90	77.077	ENSTNIG00000017615	xrn1	66	50.125	Tetraodon_nigroviridis
ENSPMAG00000002975	xrn1	72	77.011	ENSTBEG00000003256	XRN1	51	77.011	Tupaia_belangeri
ENSPMAG00000002975	xrn1	91	75.793	ENSTTRG00000012914	XRN1	62	75.793	Tursiops_truncatus
ENSPMAG00000002975	xrn1	91	72.701	ENSUAMG00000001608	XRN1	93	52.454	Ursus_americanus
ENSPMAG00000002975	xrn1	91	78.161	ENSUMAG00000013625	XRN1	65	50.337	Ursus_maritimus
ENSPMAG00000002975	xrn1	85	78.448	ENSVPAG00000004690	XRN1	61	49.466	Vicugna_pacos
ENSPMAG00000002975	xrn1	91	78.736	ENSVVUG00000024461	XRN1	99	54.528	Vulpes_vulpes
ENSPMAG00000002975	xrn1	90	77.650	ENSXETG00000000619	xrn1	90	75.862	Xenopus_tropicalis
ENSPMAG00000002975	xrn1	90	76.724	ENSXCOG00000007917	xrn1	66	48.694	Xiphophorus_couchianus
ENSPMAG00000002975	xrn1	90	76.724	ENSXMAG00000018320	xrn1	68	76.724	Xiphophorus_maculatus