EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000003524 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 7944 bases
Position: chrGL481305:13824-21767
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000003882	DEAD	PF00270.29	1.3e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000003898	-	1620	-	ENSPMAP00000003882	540 (aa)	-	S4RFA0

Gene Model

Click here to download ENSPMAG00000003524's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000003524's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000003524	-	72	39.225	ENSPMAG00000008625	ddx23	53	39.416
ENSPMAG00000003524	-	88	34.947	ENSPMAG00000005580	ddx42	59	34.958
ENSPMAG00000003524	-	64	33.238	ENSPMAG00000004337	ddx54	82	33.238
ENSPMAG00000003524	-	78	30.211	ENSPMAG00000007168	ddx6	66	31.714
ENSPMAG00000003524	-	74	32.518	ENSPMAG00000001195	ddx49	81	32.518
ENSPMAG00000003524	-	51	37.500	ENSPMAG00000007486	ddx55	55	37.500
ENSPMAG00000003524	-	67	35.616	ENSPMAG00000000186	-	81	35.616
ENSPMAG00000003524	-	78	31.193	ENSPMAG00000009147	ddx18	66	32.391
ENSPMAG00000003524	-	75	32.854	ENSPMAG00000003852	ddx59	76	32.854

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000003524	-	83	61.915	WBGene00002244	laf-1	73	61.441	Caenorhabditis_elegans
ENSPMAG00000003524	-	89	70.417	ENSCING00000007637	-	71	71.277	Ciona_intestinalis
ENSPMAG00000003524	-	84	66.594	FBgn0263231	bel	65	62.127	Drosophila_melanogaster
ENSPMAG00000003524	-	87	76.744	ENSEBUG00000014402	-	71	77.542	Eptatretus_burgeri
ENSPMAG00000003524	-	89	57.143	YOR204W	DED1	84	54.426	Saccharomyces_cerevisiae