EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000003606 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 2625 bases
Position: chrGL485487:1616-4240
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000003921	zf-C2H2	PF00096.26	1.4e-22	1	4
ENSPMAP00000003921	zf-C2H2	PF00096.26	1.4e-22	2	4
ENSPMAP00000003921	zf-C2H2	PF00096.26	1.4e-22	3	4
ENSPMAP00000003921	zf-C2H2	PF00096.26	1.4e-22	4	4
ENSPMAP00000003921	zf-met	PF12874.7	5.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000003937	-	594	-	ENSPMAP00000003921	198 (aa)	-	S4RFD9

Gene Model

Click here to download ENSPMAG00000003606's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000003606's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000003606	-	67	40.385	ENSPMAG00000002022	-	100	40.385
ENSPMAG00000003606	-	68	40.708	ENSPMAG00000008879	-	100	40.708
ENSPMAG00000003606	-	69	48.571	ENSPMAG00000000404	-	91	48.571
ENSPMAG00000003606	-	71	42.593	ENSPMAG00000007500	ZNF436	100	42.593
ENSPMAG00000003606	-	71	39.216	ENSPMAG00000008691	-	99	39.216
ENSPMAG00000003606	-	69	46.789	ENSPMAG00000007084	-	100	46.789
ENSPMAG00000003606	-	97	44.915	ENSPMAG00000004710	znf236	54	44.915
ENSPMAG00000003606	-	73	45.833	ENSPMAG00000005692	-	99	40.708
ENSPMAG00000003606	-	71	38.760	ENSPMAG00000004189	-	98	38.760
ENSPMAG00000003606	-	82	42.748	ENSPMAG00000000401	-	90	44.828
ENSPMAG00000003606	-	87	44.231	ENSPMAG00000007983	-	99	44.231
ENSPMAG00000003606	-	72	35.398	ENSPMAG00000009794	PRDM15	58	35.398
ENSPMAG00000003606	-	71	43.396	ENSPMAG00000000706	-	100	43.396
ENSPMAG00000003606	-	74	41.406	ENSPMAG00000005248	prdm5	92	41.406
ENSPMAG00000003606	-	71	47.561	ENSPMAG00000000839	-	99	47.561
ENSPMAG00000003606	-	77	47.778	ENSPMAG00000004344	-	93	47.778
ENSPMAG00000003606	-	72	42.500	ENSPMAG00000006198	ZBTB47	61	42.500
ENSPMAG00000003606	-	75	42.623	ENSPMAG00000001294	-	99	42.623
ENSPMAG00000003606	-	71	34.058	ENSPMAG00000006708	-	96	34.058
ENSPMAG00000003606	-	68	40.594	ENSPMAG00000007492	-	92	40.594
ENSPMAG00000003606	-	75	41.727	ENSPMAG00000008196	-	100	41.727
ENSPMAG00000003606	-	74	45.038	ENSPMAG00000007731	-	90	45.038
ENSPMAG00000003606	-	73	43.750	ENSPMAG00000006066	znf366	86	43.750

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000003606	-	74	73.786	ENSCSAVG00000011146	-	71	73.786	Ciona_savignyi
ENSPMAG00000003606	-	75	91.209	ENSEBUG00000004314	-	67	91.209	Eptatretus_burgeri