EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000003778 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: -
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 14495 bases
Position: chrGL483468:158-14652
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000004128	RRM_1	PF00076.22	1.5e-17	1	2
ENSPMAP00000004128	RRM_1	PF00076.22	1.5e-17	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000004145	-	1882	-	ENSPMAP00000004128	530 (aa)	-	S4RFZ6

Gene Model

Click here to download ENSPMAG00000003778's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000003778's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000003778	rnpc3	98	45.889	ENSG00000185946	RNPC3	96	45.698	Homo_sapiens
ENSPMAG00000003778	rnpc3	96	45.315	ENSAPOG00000017371	rnpc3	96	42.509	Acanthochromis_polyacanthus
ENSPMAG00000003778	rnpc3	98	45.889	ENSAMEG00000001694	RNPC3	96	45.594	Ailuropoda_melanoleuca
ENSPMAG00000003778	rnpc3	95	43.411	ENSACIG00000021043	rnpc3	50	48.828	Amphilophus_citrinellus
ENSPMAG00000003778	rnpc3	96	44.677	ENSAOCG00000014052	rnpc3	95	42.144	Amphiprion_ocellaris
ENSPMAG00000003778	rnpc3	51	49.821	ENSAPEG00000008739	rnpc3	95	42.537	Amphiprion_percula
ENSPMAG00000003778	rnpc3	89	45.992	ENSAPLG00000015605	RNPC3	99	46.835	Anas_platyrhynchos
ENSPMAG00000003778	rnpc3	95	45.545	ENSACAG00000002029	RNPC3	96	44.466	Anolis_carolinensis
ENSPMAG00000003778	rnpc3	97	45.857	ENSANAG00000019950	RNPC3	95	45.665	Aotus_nancymaae
ENSPMAG00000003778	rnpc3	96	44.250	ENSACLG00000014702	rnpc3	96	41.556	Astatotilapia_calliptera
ENSPMAG00000003778	rnpc3	98	45.315	ENSBTAG00000019091	RNPC3	96	45.402	Bos_taurus
ENSPMAG00000003778	rnpc3	51	47.080	ENSCJAG00000035686	RNPC3	95	43.353	Callithrix_jacchus
ENSPMAG00000003778	rnpc3	98	45.785	ENSCAFG00000019972	RNPC3	96	45.873	Canis_familiaris
ENSPMAG00000003778	rnpc3	98	45.977	ENSCAFG00020011300	RNPC3	96	45.681	Canis_lupus_dingo
ENSPMAG00000003778	rnpc3	98	44.359	ENSCHIG00000020361	RNPC3	96	45.211	Capra_hircus
ENSPMAG00000003778	rnpc3	51	45.620	ENSTSYG00000030256	RNPC3	51	46.642	Carlito_syrichta
ENSPMAG00000003778	rnpc3	86	41.649	ENSCAPG00000013600	RNPC3	60	43.529	Cavia_aperea
ENSPMAG00000003778	rnpc3	98	44.000	ENSCPOG00000031638	RNPC3	96	45.019	Cavia_porcellus
ENSPMAG00000003778	rnpc3	97	45.962	ENSCCAG00000024301	RNPC3	95	45.665	Cebus_capucinus
ENSPMAG00000003778	rnpc3	98	45.873	ENSCATG00000002086	RNPC3	96	45.594	Cercocebus_atys
ENSPMAG00000003778	rnpc3	98	36.398	ENSCATG00000035930	-	50	47.345	Cercocebus_atys
ENSPMAG00000003778	rnpc3	98	43.810	ENSCLAG00000005169	RNPC3	96	43.786	Chinchilla_lanigera
ENSPMAG00000003778	rnpc3	98	45.873	ENSCSAG00000001519	RNPC3	96	45.594	Chlorocebus_sabaeus
ENSPMAG00000003778	rnpc3	97	47.184	ENSCPBG00000028311	RNPC3	95	47.104	Chrysemys_picta_bellii
ENSPMAG00000003778	rnpc3	58	51.095	ENSCSAVG00000002800	-	72	56.198	Ciona_savignyi
ENSPMAG00000003778	rnpc3	98	46.065	ENSCANG00000031444	RNPC3	96	45.785	Colobus_angolensis_palliatus
ENSPMAG00000003778	rnpc3	98	44.297	ENSCGRG00001019276	Rnpc3	96	44.656	Cricetulus_griseus_chok1gshd
ENSPMAG00000003778	rnpc3	89	43.867	ENSCGRG00000000053	Rnpc3	100	44.259	Cricetulus_griseus_crigri
ENSPMAG00000003778	rnpc3	95	45.385	ENSCVAG00000002645	rnpc3	95	41.917	Cyprinodon_variegatus
ENSPMAG00000003778	rnpc3	98	45.698	ENSDNOG00000047498	-	96	45.211	Dasypus_novemcinctus
ENSPMAG00000003778	rnpc3	98	45.698	ENSDNOG00000044555	-	96	45.211	Dasypus_novemcinctus
ENSPMAG00000003778	rnpc3	98	44.828	ENSDORG00000027343	Rnpc3	96	43.570	Dipodomys_ordii
ENSPMAG00000003778	rnpc3	52	34.483	FBgn0265184	CG44249	66	33.520	Drosophila_melanogaster
ENSPMAG00000003778	rnpc3	98	51.036	ENSEBUG00000002068	rnpc3	51	55.556	Eptatretus_burgeri
ENSPMAG00000003778	rnpc3	98	45.889	ENSEASG00005015957	RNPC3	96	45.019	Equus_asinus_asinus
ENSPMAG00000003778	rnpc3	98	45.889	ENSECAG00000021148	RNPC3	96	45.019	Equus_caballus
ENSPMAG00000003778	rnpc3	98	46.374	ENSFCAG00000024312	RNPC3	96	46.272	Felis_catus
ENSPMAG00000003778	rnpc3	89	46.624	ENSFALG00000002580	RNPC3	99	51.887	Ficedula_albicollis
ENSPMAG00000003778	rnpc3	98	42.939	ENSFDAG00000019948	RNPC3	96	44.297	Fukomys_damarensis
ENSPMAG00000003778	rnpc3	96	44.208	ENSFHEG00000020647	rnpc3	96	40.713	Fundulus_heteroclitus
ENSPMAG00000003778	rnpc3	98	45.333	ENSGMOG00000019213	rnpc3	97	44.886	Gadus_morhua
ENSPMAG00000003778	rnpc3	97	45.905	ENSGAFG00000017236	rnpc3	98	42.251	Gambusia_affinis
ENSPMAG00000003778	rnpc3	51	48.540	ENSGACG00000002048	rnpc3	94	43.774	Gasterosteus_aculeatus
ENSPMAG00000003778	rnpc3	97	47.481	ENSGAGG00000008438	RNPC3	95	47.490	Gopherus_agassizii
ENSPMAG00000003778	rnpc3	85	39.326	ENSGGOG00000026201	-	85	39.098	Gorilla_gorilla
ENSPMAG00000003778	rnpc3	51	46.520	ENSHBUG00000015966	rnpc3	74	41.117	Haplochromis_burtoni
ENSPMAG00000003778	rnpc3	98	42.476	ENSHGLG00000001708	RNPC3	96	43.870	Heterocephalus_glaber_female
ENSPMAG00000003778	rnpc3	98	42.476	ENSHGLG00100003005	RNPC3	96	43.870	Heterocephalus_glaber_male
ENSPMAG00000003778	rnpc3	97	45.857	ENSHCOG00000017135	rnpc3	97	42.910	Hippocampus_comes
ENSPMAG00000003778	rnpc3	98	43.595	ENSSTOG00000025020	RNPC3	51	45.522	Ictidomys_tridecemlineatus
ENSPMAG00000003778	rnpc3	96	46.394	ENSJJAG00000010203	Rnpc3	74	63.333	Jaculus_jaculus
ENSPMAG00000003778	rnpc3	95	44.094	ENSKMAG00000017358	rnpc3	96	44.272	Kryptolebias_marmoratus
ENSPMAG00000003778	rnpc3	96	44.466	ENSLACG00000005720	RNPC3	90	46.004	Latimeria_chalumnae
ENSPMAG00000003778	rnpc3	97	42.035	ENSLOCG00000007986	rnpc3	97	41.682	Lepisosteus_oculatus
ENSPMAG00000003778	rnpc3	97	45.349	ENSLAFG00000032342	RNPC3	96	45.192	Loxodonta_africana
ENSPMAG00000003778	rnpc3	75	42.356	ENSMFAG00000002917	-	55	46.000	Macaca_fascicularis
ENSPMAG00000003778	rnpc3	98	45.873	ENSMFAG00000002004	RNPC3	96	45.594	Macaca_fascicularis
ENSPMAG00000003778	rnpc3	98	45.681	ENSMMUG00000018039	RNPC3	96	45.402	Macaca_mulatta
ENSPMAG00000003778	rnpc3	78	47.005	ENSMMUG00000002098	-	75	58.667	Macaca_mulatta
ENSPMAG00000003778	rnpc3	98	42.802	ENSMNEG00000033950	RNPC3	96	42.529	Macaca_nemestrina
ENSPMAG00000003778	rnpc3	98	45.873	ENSMLEG00000033628	RNPC3	96	45.594	Mandrillus_leucophaeus
ENSPMAG00000003778	rnpc3	75	42.356	ENSMLEG00000034644	-	52	46.000	Mandrillus_leucophaeus
ENSPMAG00000003778	rnpc3	97	42.966	ENSMAMG00000007496	rnpc3	98	40.147	Mastacembelus_armatus
ENSPMAG00000003778	rnpc3	96	43.726	ENSMZEG00005020233	rnpc3	97	40.485	Maylandia_zebra
ENSPMAG00000003778	rnpc3	89	46.541	ENSMGAG00000006381	RNPC3	99	43.424	Meleagris_gallopavo
ENSPMAG00000003778	rnpc3	98	44.190	ENSMAUG00000001358	Rnpc3	96	45.124	Mesocricetus_auratus
ENSPMAG00000003778	rnpc3	98	42.176	ENSMICG00000029591	RNPC3	51	45.896	Microcebus_murinus
ENSPMAG00000003778	rnpc3	98	44.297	ENSMOCG00000013423	Rnpc3	96	44.656	Microtus_ochrogaster
ENSPMAG00000003778	rnpc3	97	45.753	ENSMODG00000002946	RNPC3	50	47.744	Monodelphis_domestica
ENSPMAG00000003778	rnpc3	50	46.154	ENSMALG00000015471	rnpc3	97	41.264	Monopterus_albus
ENSPMAG00000003778	rnpc3	98	44.569	MGP_CAROLIEiJ_G0025555	Rnpc3	98	44.925	Mus_caroli
ENSPMAG00000003778	rnpc3	98	44.571	ENSMUSG00000027981	Rnpc3	99	44.672	Mus_musculus
ENSPMAG00000003778	rnpc3	98	45.143	MGP_PahariEiJ_G0027001	Rnpc3	98	45.315	Mus_pahari
ENSPMAG00000003778	rnpc3	98	45.124	MGP_SPRETEiJ_G0026505	Rnpc3	98	45.315	Mus_spretus
ENSPMAG00000003778	rnpc3	98	46.080	ENSMPUG00000007349	RNPC3	96	45.785	Mustela_putorius_furo
ENSPMAG00000003778	rnpc3	98	42.830	ENSMLUG00000028743	RNPC3	96	45.000	Myotis_lucifugus
ENSPMAG00000003778	rnpc3	98	42.966	ENSNGAG00000010939	Rnpc3	97	43.893	Nannospalax_galili
ENSPMAG00000003778	rnpc3	95	44.576	ENSNBRG00000012196	rnpc3	92	41.843	Neolamprologus_brichardi
ENSPMAG00000003778	rnpc3	98	45.889	ENSNLEG00000012013	RNPC3	96	45.594	Nomascus_leucogenys
ENSPMAG00000003778	rnpc3	98	44.933	ENSODEG00000007612	RNPC3	96	44.444	Octodon_degus
ENSPMAG00000003778	rnpc3	95	45.972	ENSONIG00000004770	rnpc3	99	43.321	Oreochromis_niloticus
ENSPMAG00000003778	rnpc3	92	46.951	ENSOANG00000008220	RNPC3	56	47.955	Ornithorhynchus_anatinus
ENSPMAG00000003778	rnpc3	98	45.038	ENSOCUG00000004016	RNPC3	96	45.698	Oryctolagus_cuniculus
ENSPMAG00000003778	rnpc3	97	48.155	ENSORLG00000005694	rnpc3	97	43.879	Oryzias_latipes
ENSPMAG00000003778	rnpc3	97	47.379	ENSORLG00020005513	rnpc3	97	43.691	Oryzias_latipes_hni
ENSPMAG00000003778	rnpc3	97	47.767	ENSORLG00015002179	rnpc3	97	43.126	Oryzias_latipes_hsok
ENSPMAG00000003778	rnpc3	98	41.746	ENSOGAG00000026182	RNPC3	51	46.067	Otolemur_garnettii
ENSPMAG00000003778	rnpc3	98	44.359	ENSOARG00000018719	RNPC3	96	45.211	Ovis_aries
ENSPMAG00000003778	rnpc3	98	45.802	ENSPPAG00000037459	RNPC3	96	45.611	Pan_paniscus
ENSPMAG00000003778	rnpc3	50	40.824	ENSPPAG00000030278	-	51	40.226	Pan_paniscus
ENSPMAG00000003778	rnpc3	98	46.374	ENSPPRG00000020246	RNPC3	96	46.272	Panthera_pardus
ENSPMAG00000003778	rnpc3	98	46.374	ENSPTIG00000009887	RNPC3	98	46.272	Panthera_tigris_altaica
ENSPMAG00000003778	rnpc3	85	41.199	ENSPTRG00000044227	-	87	40.602	Pan_troglodytes
ENSPMAG00000003778	rnpc3	98	45.889	ENSPTRG00000033902	RNPC3	96	45.698	Pan_troglodytes
ENSPMAG00000003778	rnpc3	98	45.873	ENSPANG00000012137	RNPC3	96	45.489	Papio_anubis
ENSPMAG00000003778	rnpc3	98	39.504	ENSPANG00000029957	-	52	44.800	Papio_anubis
ENSPMAG00000003778	rnpc3	96	45.543	ENSPKIG00000008828	rnpc3	95	41.887	Paramormyrops_kingsleyae
ENSPMAG00000003778	rnpc3	65	46.686	ENSPSIG00000007396	RNPC3	99	45.245	Pelodiscus_sinensis
ENSPMAG00000003778	rnpc3	89	43.451	ENSPEMG00000020112	Rnpc3	100	44.050	Peromyscus_maniculatus_bairdii
ENSPMAG00000003778	rnpc3	97	47.195	ENSPCIG00000004415	-	50	47.744	Phascolarctos_cinereus
ENSPMAG00000003778	rnpc3	82	38.636	ENSPPYG00000001102	RNPC3	95	39.909	Pongo_abelii
ENSPMAG00000003778	rnpc3	96	44.250	ENSPNYG00000020603	rnpc3	96	41.556	Pundamilia_nyererei
ENSPMAG00000003778	rnpc3	76	51.802	ENSPNAG00000000524	rnpc3	76	51.802	Pygocentrus_nattereri
ENSPMAG00000003778	rnpc3	50	48.507	ENSRNOG00000017310	Rnpc3	96	44.841	Rattus_norvegicus
ENSPMAG00000003778	rnpc3	98	42.529	ENSRBIG00000043897	RNPC3	96	42.447	Rhinopithecus_bieti
ENSPMAG00000003778	rnpc3	98	45.873	ENSRROG00000032334	RNPC3	96	45.594	Rhinopithecus_roxellana
ENSPMAG00000003778	rnpc3	98	45.698	ENSSBOG00000024473	RNPC3	96	45.402	Saimiri_boliviensis_boliviensis
ENSPMAG00000003778	rnpc3	97	46.705	ENSSHAG00000011859	RNPC3	50	47.191	Sarcophilus_harrisii
ENSPMAG00000003778	rnpc3	96	47.389	ENSSFOG00015013055	rnpc3	98	42.884	Scleropages_formosus
ENSPMAG00000003778	rnpc3	95	43.353	ENSSDUG00000006600	rnpc3	95	41.760	Seriola_dumerili
ENSPMAG00000003778	rnpc3	50	48.175	ENSSLDG00000007979	rnpc3	95	41.948	Seriola_lalandi_dorsalis
ENSPMAG00000003778	rnpc3	87	46.269	ENSSPUG00000003872	-	71	58.861	Sphenodon_punctatus
ENSPMAG00000003778	rnpc3	50	48.507	ENSSPUG00000008539	-	95	41.101	Sphenodon_punctatus
ENSPMAG00000003778	rnpc3	50	51.504	ENSSPAG00000005633	rnpc3	95	44.294	Stegastes_partitus
ENSPMAG00000003778	rnpc3	98	45.420	ENSSSCG00000037254	RNPC3	96	45.698	Sus_scrofa
ENSPMAG00000003778	rnpc3	89	46.624	ENSTGUG00000004795	-	57	48.120	Taeniopygia_guttata
ENSPMAG00000003778	rnpc3	95	43.275	ENSTNIG00000018963	rnpc3	95	42.015	Tetraodon_nigroviridis
ENSPMAG00000003778	rnpc3	98	45.785	ENSUMAG00000007775	RNPC3	98	45.402	Ursus_maritimus
ENSPMAG00000003778	rnpc3	98	45.977	ENSVVUG00000000331	RNPC3	96	45.681	Vulpes_vulpes
ENSPMAG00000003778	rnpc3	98	40.678	ENSXETG00000025027	rnpc3	98	39.434	Xenopus_tropicalis
ENSPMAG00000003778	rnpc3	97	44.487	ENSXCOG00000005013	rnpc3	98	41.296	Xiphophorus_couchianus
ENSPMAG00000003778	rnpc3	97	45.143	ENSXMAG00000006495	rnpc3	98	39.469	Xiphophorus_maculatus