EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000003871 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 10781 bases
Position: chrGL484668:1435-12215
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000004237	ResIII	PF04851.15	6.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000004254	-	1578	-	ENSPMAP00000004237	526 (aa)	-	S4RGA5

Gene Model

Click here to download ENSPMAG00000003871's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000003871's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000003871	-	71	44.643	ENSPMAG00000001636	rad54l2	63	44.643
ENSPMAG00000003871	-	99	43.258	ENSPMAG00000008026	SMARCA5	79	43.203
ENSPMAG00000003871	-	96	44.574	ENSPMAG00000006011	SMARCA5	50	44.574
ENSPMAG00000003871	-	73	43.341	ENSPMAG00000001030	-	57	43.341
ENSPMAG00000003871	-	80	33.002	ENSPMAG00000005064	ercc6l	67	32.207
ENSPMAG00000003871	-	89	31.528	ENSPMAG00000002916	rad54b	61	31.323
ENSPMAG00000003871	-	78	31.416	ENSPMAG00000007719	rad54l	60	31.347
ENSPMAG00000003871	-	89	51.515	ENSPMAG00000004376	hells	56	52.941

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000003871	-	100	82.543	ENSG00000173575	CHD2	87	94.898	Homo_sapiens
ENSPMAG00000003871	-	100	82.543	ENSBTAG00000017776	CHD2	63	81.784	Bos_taurus
ENSPMAG00000003871	-	100	83.302	ENSCPBG00000018049	-	60	82.197	Chrysemys_picta_bellii
ENSPMAG00000003871	-	100	71.023	ENSCSAVG00000007580	-	53	70.833	Ciona_savignyi
ENSPMAG00000003871	-	100	83.302	ENSGAGG00000013176	-	62	82.543	Gopherus_agassizii
ENSPMAG00000003871	-	100	82.543	ENSLAFG00000016885	-	60	81.784	Loxodonta_africana
ENSPMAG00000003871	-	100	82.543	ENSOCUG00000001628	-	51	81.784	Oryctolagus_cuniculus
ENSPMAG00000003871	-	63	62.349	ENSPREG00000006449	-	79	75.000	Poecilia_reticulata