EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000003956 (Gene tree)
Gene ID: -
Gene Symbol: parn
Alias: -
Full Name: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 35701 bases
Position: chrGL476717:207412-243112
Accession: ZDB-GENE-040426-880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000004386	RNA_bind	PF08675.11	1.5e-31	1	1
ENSPMAP00000004386	CAF1	PF04857.20	8.3e-85	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000004403	-	1569	-	ENSPMAP00000004386	523 (aa)	-	S4RGQ4

Gene Model

Click here to download ENSPMAG00000003956's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000003956's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000003956	parn	90	30.832	ENSG00000146453	PNLDC1	86	30.629	Homo_sapiens
ENSPMAG00000003956	parn	99	67.500	ENSG00000140694	PARN	99	60.627	Homo_sapiens
ENSPMAG00000003956	parn	98	67.505	ENSAMEG00000011208	PARN	80	67.505	Ailuropoda_melanoleuca
ENSPMAG00000003956	parn	98	67.052	ENSACIG00000000619	parn	80	67.052	Amphilophus_citrinellus
ENSPMAG00000003956	parn	99	67.844	ENSAOCG00000003465	parn	78	67.844	Amphiprion_ocellaris
ENSPMAG00000003956	parn	89	67.505	ENSAPEG00000010661	parn	91	67.505	Amphiprion_percula
ENSPMAG00000003956	parn	98	69.750	ENSATEG00000004661	parn	76	69.750	Anabas_testudineus
ENSPMAG00000003956	parn	71	30.334	ENSAPLG00000007014	PNLDC1	68	30.334	Anas_platyrhynchos
ENSPMAG00000003956	parn	98	66.602	ENSAPLG00000013914	PARN	81	66.602	Anas_platyrhynchos
ENSPMAG00000003956	parn	99	66.219	ENSACAG00000004973	PARN	80	66.987	Anolis_carolinensis
ENSPMAG00000003956	parn	99	67.692	ENSANAG00000031516	PARN	81	67.692	Aotus_nancymaae
ENSPMAG00000003956	parn	98	69.171	ENSACLG00000004742	parn	76	69.171	Astatotilapia_calliptera
ENSPMAG00000003956	parn	98	68.023	ENSAMXG00000012390	parn	87	64.794	Astyanax_mexicanus
ENSPMAG00000003956	parn	98	65.891	ENSBTAG00000018097	PARN	79	69.130	Bos_taurus
ENSPMAG00000003956	parn	99	67.885	ENSCJAG00000015866	PARN	81	67.885	Callithrix_jacchus
ENSPMAG00000003956	parn	90	30.408	ENSCJAG00000011865	PNLDC1	86	30.204	Callithrix_jacchus
ENSPMAG00000003956	parn	99	66.923	ENSCAFG00000018795	PARN	81	66.923	Canis_familiaris
ENSPMAG00000003956	parn	99	66.923	ENSCAFG00020024126	PARN	81	66.923	Canis_lupus_dingo
ENSPMAG00000003956	parn	62	32.743	ENSCAFG00020017742	PNLDC1	91	32.153	Canis_lupus_dingo
ENSPMAG00000003956	parn	98	68.605	ENSCHIG00000018143	PARN	81	67.946	Capra_hircus
ENSPMAG00000003956	parn	89	43.724	ENSCAPG00000007984	PARN	78	43.606	Cavia_aperea
ENSPMAG00000003956	parn	99	67.115	ENSCPOG00000002263	PARN	81	67.115	Cavia_porcellus
ENSPMAG00000003956	parn	99	67.500	ENSCCAG00000030367	PARN	91	57.627	Cebus_capucinus
ENSPMAG00000003956	parn	90	30.629	ENSCATG00000033196	PNLDC1	86	30.426	Cercocebus_atys
ENSPMAG00000003956	parn	99	67.308	ENSCATG00000041368	PARN	93	67.308	Cercocebus_atys
ENSPMAG00000003956	parn	99	67.308	ENSCLAG00000015406	PARN	81	67.308	Chinchilla_lanigera
ENSPMAG00000003956	parn	99	67.500	ENSCSAG00000008142	PARN	81	67.500	Chlorocebus_sabaeus
ENSPMAG00000003956	parn	96	51.081	ENSCHOG00000007014	PARN	80	51.081	Choloepus_hoffmanni
ENSPMAG00000003956	parn	88	67.756	ENSCPBG00000006609	PARN	79	67.756	Chrysemys_picta_bellii
ENSPMAG00000003956	parn	98	43.833	ENSCING00000010142	-	99	43.346	Ciona_intestinalis
ENSPMAG00000003956	parn	99	56.874	ENSCANG00000028849	-	80	56.874	Colobus_angolensis_palliatus
ENSPMAG00000003956	parn	99	65.835	ENSCGRG00001012096	Parn	82	65.835	Cricetulus_griseus_chok1gshd
ENSPMAG00000003956	parn	90	31.237	ENSCGRG00001007470	-	86	30.832	Cricetulus_griseus_chok1gshd
ENSPMAG00000003956	parn	90	31.237	ENSCGRG00000010221	-	86	30.832	Cricetulus_griseus_crigri
ENSPMAG00000003956	parn	99	65.835	ENSCGRG00000004939	Parn	82	65.835	Cricetulus_griseus_crigri
ENSPMAG00000003956	parn	100	68.880	ENSCSEG00000002064	parn	100	56.306	Cynoglossus_semilaevis
ENSPMAG00000003956	parn	98	69.364	ENSCVAG00000014848	parn	76	69.364	Cyprinodon_variegatus
ENSPMAG00000003956	parn	98	67.308	ENSDARG00000102634	parn	100	52.532	Danio_rerio
ENSPMAG00000003956	parn	98	68.217	ENSDNOG00000000833	PARN	90	68.217	Dasypus_novemcinctus
ENSPMAG00000003956	parn	62	31.045	ENSDORG00000011517	Pnldc1	97	30.746	Dipodomys_ordii
ENSPMAG00000003956	parn	79	60.127	ENSETEG00000014828	-	69	60.127	Echinops_telfairi
ENSPMAG00000003956	parn	76	30.562	ENSEBUG00000008118	PNLDC1	73	30.562	Eptatretus_burgeri
ENSPMAG00000003956	parn	99	66.857	ENSEASG00005011400	PARN	82	66.603	Equus_asinus_asinus
ENSPMAG00000003956	parn	99	66.667	ENSECAG00000017792	PARN	82	66.412	Equus_caballus
ENSPMAG00000003956	parn	81	52.018	ENSEEUG00000010370	PARN	67	52.018	Erinaceus_europaeus
ENSPMAG00000003956	parn	98	68.411	ENSELUG00000013139	parn	68	68.411	Esox_lucius
ENSPMAG00000003956	parn	98	68.217	ENSFCAG00000044961	PARN	80	68.217	Felis_catus
ENSPMAG00000003956	parn	97	67.121	ENSFALG00000003911	PARN	79	67.121	Ficedula_albicollis
ENSPMAG00000003956	parn	98	67.052	ENSFDAG00000009234	PARN	83	65.896	Fukomys_damarensis
ENSPMAG00000003956	parn	98	62.879	ENSFHEG00000013738	parn	92	66.102	Fundulus_heteroclitus
ENSPMAG00000003956	parn	98	68.411	ENSGMOG00000003231	parn	94	68.411	Gadus_morhua
ENSPMAG00000003956	parn	99	66.987	ENSGALG00000003091	PARN	82	66.987	Gallus_gallus
ENSPMAG00000003956	parn	74	30.827	ENSGALG00000011624	PNLDC1	72	30.827	Gallus_gallus
ENSPMAG00000003956	parn	98	68.979	ENSGAFG00000011061	parn	76	68.979	Gambusia_affinis
ENSPMAG00000003956	parn	99	66.976	ENSGACG00000019501	parn	86	66.976	Gasterosteus_aculeatus
ENSPMAG00000003956	parn	99	67.692	ENSGGOG00000025224	PARN	77	73.776	Gorilla_gorilla
ENSPMAG00000003956	parn	90	30.832	ENSGGOG00000014077	PNLDC1	86	30.629	Gorilla_gorilla
ENSPMAG00000003956	parn	98	69.171	ENSHBUG00000017906	parn	87	66.987	Haplochromis_burtoni
ENSPMAG00000003956	parn	98	66.859	ENSHGLG00000010886	PARN	81	66.859	Heterocephalus_glaber_female
ENSPMAG00000003956	parn	98	66.859	ENSHGLG00100014659	PARN	81	66.859	Heterocephalus_glaber_male
ENSPMAG00000003956	parn	97	64.844	ENSHCOG00000008683	parn	88	64.844	Hippocampus_comes
ENSPMAG00000003956	parn	98	57.611	ENSIPUG00000012401	parn	77	57.885	Ictalurus_punctatus
ENSPMAG00000003956	parn	99	67.946	ENSSTOG00000007519	PARN	82	67.946	Ictidomys_tridecemlineatus
ENSPMAG00000003956	parn	99	66.923	ENSJJAG00000023049	Parn	83	66.923	Jaculus_jaculus
ENSPMAG00000003956	parn	99	69.376	ENSKMAG00000009462	parn	78	69.376	Kryptolebias_marmoratus
ENSPMAG00000003956	parn	98	68.593	ENSLBEG00000009167	parn	81	68.593	Labrus_bergylta
ENSPMAG00000003956	parn	93	64.490	ENSLACG00000004207	PARN	100	60.094	Latimeria_chalumnae
ENSPMAG00000003956	parn	99	68.269	ENSLOCG00000000715	parn	76	68.269	Lepisosteus_oculatus
ENSPMAG00000003956	parn	98	68.217	ENSLAFG00000015036	PARN	81	67.961	Loxodonta_africana
ENSPMAG00000003956	parn	62	30.952	ENSLAFG00000030189	PNLDC1	89	30.952	Loxodonta_africana
ENSPMAG00000003956	parn	90	30.426	ENSMFAG00000041296	PNLDC1	86	30.223	Macaca_fascicularis
ENSPMAG00000003956	parn	99	64.423	ENSMFAG00000044852	PARN	74	73.776	Macaca_fascicularis
ENSPMAG00000003956	parn	90	30.426	ENSMMUG00000004181	PNLDC1	86	30.223	Macaca_mulatta
ENSPMAG00000003956	parn	99	67.500	ENSMMUG00000018849	PARN	81	67.500	Macaca_mulatta
ENSPMAG00000003956	parn	99	67.500	ENSMNEG00000045108	PARN	81	67.500	Macaca_nemestrina
ENSPMAG00000003956	parn	90	30.426	ENSMNEG00000034271	PNLDC1	93	30.195	Macaca_nemestrina
ENSPMAG00000003956	parn	99	67.500	ENSMLEG00000031743	PARN	81	67.500	Mandrillus_leucophaeus
ENSPMAG00000003956	parn	99	68.620	ENSMAMG00000006939	parn	77	68.620	Mastacembelus_armatus
ENSPMAG00000003956	parn	98	69.171	ENSMZEG00005013590	parn	88	67.562	Maylandia_zebra
ENSPMAG00000003956	parn	94	66.197	ENSMGAG00000001004	PARN	78	66.197	Meleagris_gallopavo
ENSPMAG00000003956	parn	71	30.628	ENSMGAG00000012470	PNLDC1	68	30.628	Meleagris_gallopavo
ENSPMAG00000003956	parn	67	35.135	ENSMAUG00000012298	Pnldc1	72	35.135	Mesocricetus_auratus
ENSPMAG00000003956	parn	99	61.787	ENSMAUG00000008025	Parn	82	61.787	Mesocricetus_auratus
ENSPMAG00000003956	parn	99	67.692	ENSMICG00000016053	PARN	81	67.692	Microcebus_murinus
ENSPMAG00000003956	parn	94	65.392	ENSMOCG00000022211	Parn	100	65.392	Microtus_ochrogaster
ENSPMAG00000003956	parn	99	67.500	ENSMMOG00000011333	parn	84	67.500	Mola_mola
ENSPMAG00000003956	parn	94	68.200	ENSMODG00000004915	PARN	99	68.200	Monodelphis_domestica
ENSPMAG00000003956	parn	97	69.201	ENSMALG00000019426	parn	87	69.201	Monopterus_albus
ENSPMAG00000003956	parn	99	64.943	MGP_CAROLIEiJ_G0020466	Parn	82	64.943	Mus_caroli
ENSPMAG00000003956	parn	62	32.153	ENSMUSG00000073460	Pnldc1	97	31.563	Mus_musculus
ENSPMAG00000003956	parn	98	65.243	ENSMUSG00000022685	Parn	100	59.756	Mus_musculus
ENSPMAG00000003956	parn	99	65.134	MGP_PahariEiJ_G0016172	Parn	82	65.134	Mus_pahari
ENSPMAG00000003956	parn	90	30.924	MGP_SPRETEiJ_G0021975	Pnldc1	86	30.584	Mus_spretus
ENSPMAG00000003956	parn	99	64.943	MGP_SPRETEiJ_G0021361	Parn	82	64.943	Mus_spretus
ENSPMAG00000003956	parn	98	68.023	ENSMPUG00000014464	PARN	80	67.767	Mustela_putorius_furo
ENSPMAG00000003956	parn	94	67.807	ENSMLUG00000005414	PARN	100	67.807	Myotis_lucifugus
ENSPMAG00000003956	parn	90	30.769	ENSNGAG00000017714	Pnldc1	86	30.567	Nannospalax_galili
ENSPMAG00000003956	parn	98	67.052	ENSNBRG00000006805	parn	88	67.052	Neolamprologus_brichardi
ENSPMAG00000003956	parn	99	67.500	ENSNLEG00000010241	PARN	91	57.627	Nomascus_leucogenys
ENSPMAG00000003956	parn	85	55.319	ENSMEUG00000008178	-	71	55.319	Notamacropus_eugenii
ENSPMAG00000003956	parn	97	62.840	ENSOPRG00000012187	PARN	81	62.768	Ochotona_princeps
ENSPMAG00000003956	parn	99	61.185	ENSODEG00000001617	PARN	83	61.185	Octodon_degus
ENSPMAG00000003956	parn	98	69.364	ENSONIG00000000151	parn	80	68.966	Oreochromis_niloticus
ENSPMAG00000003956	parn	98	67.379	ENSOCUG00000000322	PARN	81	67.379	Oryctolagus_cuniculus
ENSPMAG00000003956	parn	99	67.532	ENSORLG00020010313	parn	80	67.532	Oryzias_latipes_hni
ENSPMAG00000003956	parn	99	67.161	ENSORLG00015000300	parn	80	67.161	Oryzias_latipes_hsok
ENSPMAG00000003956	parn	99	66.976	ENSOMEG00000019555	parn	97	59.459	Oryzias_melastigma
ENSPMAG00000003956	parn	94	65.594	ENSOGAG00000014626	PARN	100	65.594	Otolemur_garnettii
ENSPMAG00000003956	parn	94	68.410	ENSOARG00000007574	PARN	100	68.410	Ovis_aries
ENSPMAG00000003956	parn	99	67.500	ENSPPAG00000031438	PARN	91	57.627	Pan_paniscus
ENSPMAG00000003956	parn	90	30.832	ENSPPAG00000026651	PNLDC1	86	30.629	Pan_paniscus
ENSPMAG00000003956	parn	98	68.217	ENSPPRG00000018583	PARN	80	68.217	Panthera_pardus
ENSPMAG00000003956	parn	98	68.217	ENSPTIG00000012135	PARN	80	68.217	Panthera_tigris_altaica
ENSPMAG00000003956	parn	90	30.832	ENSPTRG00000018762	PNLDC1	86	30.629	Pan_troglodytes
ENSPMAG00000003956	parn	99	67.308	ENSPTRG00000007792	PARN	91	57.627	Pan_troglodytes
ENSPMAG00000003956	parn	90	30.629	ENSPANG00000022009	PNLDC1	86	30.426	Papio_anubis
ENSPMAG00000003956	parn	99	65.577	ENSPANG00000020099	PARN	81	65.962	Papio_anubis
ENSPMAG00000003956	parn	99	67.500	ENSPKIG00000022807	parn	82	64.639	Paramormyrops_kingsleyae
ENSPMAG00000003956	parn	99	67.370	ENSPSIG00000014804	PARN	81	67.370	Pelodiscus_sinensis
ENSPMAG00000003956	parn	98	66.602	ENSPMGG00000014431	parn	72	67.052	Periophthalmus_magnuspinnatus
ENSPMAG00000003956	parn	98	63.566	ENSPEMG00000018439	Parn	81	63.566	Peromyscus_maniculatus_bairdii
ENSPMAG00000003956	parn	80	60.000	ENSPCIG00000001259	PARN	92	59.441	Phascolarctos_cinereus
ENSPMAG00000003956	parn	98	68.786	ENSPFOG00000012823	parn	76	68.786	Poecilia_formosa
ENSPMAG00000003956	parn	98	68.786	ENSPLAG00000006395	parn	76	68.786	Poecilia_latipinna
ENSPMAG00000003956	parn	98	68.979	ENSPMEG00000007711	parn	76	68.979	Poecilia_mexicana
ENSPMAG00000003956	parn	98	68.593	ENSPREG00000000147	parn	76	68.593	Poecilia_reticulata
ENSPMAG00000003956	parn	99	67.050	ENSPPYG00000007123	PARN	81	67.050	Pongo_abelii
ENSPMAG00000003956	parn	90	30.346	ENSPPYG00000017148	PNLDC1	86	30.143	Pongo_abelii
ENSPMAG00000003956	parn	92	59.548	ENSPCAG00000001741	PARN	80	59.548	Procavia_capensis
ENSPMAG00000003956	parn	99	65.192	ENSPCOG00000019292	PARN	91	57.627	Propithecus_coquereli
ENSPMAG00000003956	parn	96	64.567	ENSPVAG00000002547	PARN	80	64.567	Pteropus_vampyrus
ENSPMAG00000003956	parn	76	30.993	ENSPVAG00000005325	PNLDC1	72	30.508	Pteropus_vampyrus
ENSPMAG00000003956	parn	98	69.171	ENSPNYG00000006835	parn	87	64.299	Pundamilia_nyererei
ENSPMAG00000003956	parn	92	67.432	ENSPNAG00000018905	parn	79	67.432	Pygocentrus_nattereri
ENSPMAG00000003956	parn	99	65.067	ENSRNOG00000002912	Parn	96	67.010	Rattus_norvegicus
ENSPMAG00000003956	parn	90	30.204	ENSRNOG00000023140	Pnldc1	89	30.952	Rattus_norvegicus
ENSPMAG00000003956	parn	90	30.204	ENSRBIG00000033806	PNLDC1	86	30.000	Rhinopithecus_bieti
ENSPMAG00000003956	parn	99	66.154	ENSSBOG00000034726	PARN	74	74.126	Saimiri_boliviensis_boliviensis
ENSPMAG00000003956	parn	76	30.170	ENSSHAG00000015192	PNLDC1	65	30.170	Sarcophilus_harrisii
ENSPMAG00000003956	parn	79	65.238	ENSSHAG00000008493	PARN	93	65.238	Sarcophilus_harrisii
ENSPMAG00000003956	parn	98	67.636	ENSSFOG00015014165	parn	85	66.279	Scleropages_formosus
ENSPMAG00000003956	parn	99	65.556	ENSSMAG00000000685	parn	88	61.538	Scophthalmus_maximus
ENSPMAG00000003956	parn	98	69.126	ENSSDUG00000014555	parn	75	68.979	Seriola_dumerili
ENSPMAG00000003956	parn	83	67.661	ENSSARG00000014339	PARN	75	67.661	Sorex_araneus
ENSPMAG00000003956	parn	99	67.115	ENSSPUG00000007719	PARN	81	67.115	Sphenodon_punctatus
ENSPMAG00000003956	parn	99	68.030	ENSSPAG00000007095	parn	87	63.755	Stegastes_partitus
ENSPMAG00000003956	parn	98	67.961	ENSSSCG00000007878	PARN	72	67.961	Sus_scrofa
ENSPMAG00000003956	parn	67	32.500	ENSTGUG00000011418	PNLDC1	66	32.000	Taeniopygia_guttata
ENSPMAG00000003956	parn	97	67.578	ENSTGUG00000004971	PARN	80	67.578	Taeniopygia_guttata
ENSPMAG00000003956	parn	99	66.298	ENSTNIG00000008252	parn	82	68.654	Tetraodon_nigroviridis
ENSPMAG00000003956	parn	88	57.143	ENSTBEG00000010407	PARN	79	57.143	Tupaia_belangeri
ENSPMAG00000003956	parn	93	67.418	ENSTTRG00000002843	PARN	77	67.418	Tursiops_truncatus
ENSPMAG00000003956	parn	84	61.416	ENSUAMG00000008283	PARN	94	57.623	Ursus_americanus
ENSPMAG00000003956	parn	98	67.636	ENSUMAG00000004527	PARN	80	67.379	Ursus_maritimus
ENSPMAG00000003956	parn	96	64.764	ENSVPAG00000008968	PARN	82	64.764	Vicugna_pacos
ENSPMAG00000003956	parn	98	67.573	ENSVVUG00000019509	PARN	81	67.179	Vulpes_vulpes
ENSPMAG00000003956	parn	99	66.538	ENSXETG00000010994	parn	98	66.538	Xenopus_tropicalis
ENSPMAG00000003956	parn	98	65.769	ENSXCOG00000015990	parn	87	65.769	Xiphophorus_couchianus
ENSPMAG00000003956	parn	98	69.364	ENSXMAG00000014783	parn	76	69.364	Xiphophorus_maculatus