EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000004337 (Gene tree)
Gene ID: -
Gene Symbol: ddx54
Alias: -
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 7947 bases
Position: chrGL483263:958-8904
Accession: ZDB-GENE-021220-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000004744	ResIII	PF04851.15	9.6e-08	1	1
ENSPMAP00000004744	DEAD	PF00270.29	1.4e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000004763	-	1188	-	ENSPMAP00000004744	396 (aa)	-	S4RHR2

Gene Model

Click here to download ENSPMAG00000004337's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000004337's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000004337	ddx54	73	38.961	ENSPMAG00000009118	-	56	38.961
ENSPMAG00000004337	ddx54	90	39.058	ENSPMAG00000003094	ddx27	50	37.065
ENSPMAG00000004337	ddx54	85	34.844	ENSPMAG00000003852	ddx59	67	34.844
ENSPMAG00000004337	ddx54	90	36.685	ENSPMAG00000001195	ddx49	77	36.685
ENSPMAG00000004337	ddx54	90	35.467	ENSPMAG00000009147	ddx18	67	35.467
ENSPMAG00000004337	ddx54	87	32.105	ENSPMAG00000008625	ddx23	50	32.199
ENSPMAG00000004337	ddx54	87	36.127	ENSPMAG00000000186	-	81	36.127
ENSPMAG00000004337	ddx54	82	33.238	ENSPMAG00000003524	-	64	33.238
ENSPMAG00000004337	ddx54	71	32.107	ENSPMAG00000007486	ddx55	57	32.107
ENSPMAG00000004337	ddx54	91	34.426	ENSPMAG00000007168	ddx6	74	34.426

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000004337	ddx54	99	77.608	ENSG00000123064	DDX54	100	85.096	Homo_sapiens
ENSPMAG00000004337	ddx54	99	78.372	ENSCAPG00000001482	DDX54	50	78.372	Cavia_aperea
ENSPMAG00000004337	ddx54	97	74.352	ENSCSAVG00000008916	-	98	72.289	Ciona_savignyi
ENSPMAG00000004337	ddx54	99	78.934	ENSEBUG00000008886	ddx54	56	78.934	Eptatretus_burgeri
ENSPMAG00000004337	ddx54	99	78.117	ENSFDAG00000019953	DDX54	50	78.117	Fukomys_damarensis
ENSPMAG00000004337	ddx54	91	76.022	ENSMLUG00000004684	-	99	76.022	Myotis_lucifugus
ENSPMAG00000004337	ddx54	90	82.451	ENSNBRG00000005588	ddx54	83	55.172	Neolamprologus_brichardi
ENSPMAG00000004337	ddx54	90	79.050	ENSMEUG00000015392	DDX54	53	79.050	Notamacropus_eugenii
ENSPMAG00000004337	ddx54	99	61.323	ENSPTIG00000019728	DDX54	53	61.323	Panthera_tigris_altaica
ENSPMAG00000004337	ddx54	95	80.902	ENSPSIG00000005055	DDX54	78	80.902	Pelodiscus_sinensis
ENSPMAG00000004337	ddx54	99	79.135	ENSPMGG00000010988	ddx54	52	79.135	Periophthalmus_magnuspinnatus
ENSPMAG00000004337	ddx54	98	82.864	ENSPNAG00000014459	ddx54	50	82.864	Pygocentrus_nattereri
ENSPMAG00000004337	ddx54	99	78.880	ENSUAMG00000028387	DDX54	50	79.016	Ursus_americanus
ENSPMAG00000004337	ddx54	99	78.372	ENSUMAG00000010245	DDX54	56	78.093	Ursus_maritimus