EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000004416 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 6689 bases
Position: chrGL477964:49898-56586
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000004843	TUDOR	PF00567.24	1.4e-47	1	2
ENSPMAP00000004843	TUDOR	PF00567.24	1.4e-47	2	2
ENSPMAP00000004848	TUDOR	PF00567.24	2.1e-46	1	2
ENSPMAP00000004848	TUDOR	PF00567.24	2.1e-46	2	2
ENSPMAP00000004856	TUDOR	PF00567.24	8.6e-37	1	2
ENSPMAP00000004856	TUDOR	PF00567.24	8.6e-37	2	2
ENSPMAP00000004848	SMN	PF06003.12	2.3e-08	1	1
ENSPMAP00000004843	SMN	PF06003.12	2.6e-08	1	1
ENSPMAP00000004856	SMN	PF06003.12	3.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000004875	-	1143	-	ENSPMAP00000004856	381 (aa)	-	S4RI24
ENSPMAT00000004867	-	1200	-	ENSPMAP00000004848	400 (aa)	-	S4RI16
ENSPMAT00000004862	-	1254	-	ENSPMAP00000004843	418 (aa)	-	S4RI11

Gene Model

Click here to download ENSPMAG00000004416's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000004416's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000004416	-	91	30.028	ENSPMAG00000008166	-	75	30.499

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000004416	-	99	30.833	ENSG00000095627	TDRD1	72	30.833	Homo_sapiens
ENSPMAG00000004416	-	95	38.889	ENSAPOG00000023199	tdrd1	69	38.889	Acanthochromis_polyacanthus
ENSPMAG00000004416	-	100	33.548	ENSAOCG00000007059	tdrd1	68	33.548	Amphiprion_ocellaris
ENSPMAG00000004416	-	99	30.769	ENSAPEG00000017049	tdrd1	74	30.000	Amphiprion_percula
ENSPMAG00000004416	-	100	31.019	ENSATEG00000021627	tdrd1	77	30.657	Anabas_testudineus
ENSPMAG00000004416	-	96	30.435	ENSCAFG00000011266	TDRD1	69	30.435	Canis_familiaris
ENSPMAG00000004416	-	96	30.435	ENSCAFG00020012373	TDRD1	69	30.435	Canis_lupus_dingo
ENSPMAG00000004416	-	98	33.333	ENSTSYG00000004935	TDRD1	69	33.333	Carlito_syrichta
ENSPMAG00000004416	-	99	32.500	ENSCATG00000035999	TDRD1	71	32.500	Cercocebus_atys
ENSPMAG00000004416	-	96	44.643	ENSCHOG00000001690	TDRD1	55	30.675	Choloepus_hoffmanni
ENSPMAG00000004416	-	99	30.326	ENSCPBG00000003780	TDRD1	73	30.326	Chrysemys_picta_bellii
ENSPMAG00000004416	-	99	32.500	ENSCANG00000035172	TDRD1	71	32.500	Colobus_angolensis_palliatus
ENSPMAG00000004416	-	99	36.667	ENSCSEG00000006983	tdrd1	77	35.417	Cynoglossus_semilaevis
ENSPMAG00000004416	-	100	31.688	ENSDARG00000007465	tdrd1	68	31.429	Danio_rerio
ENSPMAG00000004416	-	100	30.709	ENSDNOG00000012114	TDRD1	70	30.709	Dasypus_novemcinctus
ENSPMAG00000004416	-	98	30.097	ENSDORG00000009986	Tdrd1	70	30.097	Dipodomys_ordii
ENSPMAG00000004416	-	84	30.531	ENSEBUG00000003519	-	93	30.531	Eptatretus_burgeri
ENSPMAG00000004416	-	96	33.333	ENSEASG00005014802	TDRD1	71	32.000	Equus_asinus_asinus
ENSPMAG00000004416	-	99	33.333	ENSECAG00000009748	TDRD1	61	33.036	Equus_caballus
ENSPMAG00000004416	-	100	30.159	ENSELUG00000024364	tdrd1	75	30.159	Esox_lucius
ENSPMAG00000004416	-	100	36.957	ENSFALG00000002237	TDRD1	81	36.957	Ficedula_albicollis
ENSPMAG00000004416	-	99	30.769	ENSFHEG00000009203	tdrd1	77	30.769	Fundulus_heteroclitus
ENSPMAG00000004416	-	91	37.013	ENSGMOG00000016797	-	68	34.545	Gadus_morhua
ENSPMAG00000004416	-	99	32.941	ENSGAFG00000002668	tdrd1	69	32.941	Gambusia_affinis
ENSPMAG00000004416	-	100	30.729	ENSGACG00000006590	tdrd1	98	30.729	Gasterosteus_aculeatus
ENSPMAG00000004416	-	99	30.833	ENSGGOG00000004250	TDRD1	71	30.833	Gorilla_gorilla
ENSPMAG00000004416	-	100	31.068	ENSIPUG00000017232	tdrd1	78	31.068	Ictalurus_punctatus
ENSPMAG00000004416	-	98	30.097	ENSSTOG00000003221	TDRD1	69	30.097	Ictidomys_tridecemlineatus
ENSPMAG00000004416	-	100	30.769	ENSKMAG00000018558	tdrd1	84	30.155	Kryptolebias_marmoratus
ENSPMAG00000004416	-	99	34.194	ENSLBEG00000004161	tdrd1	68	34.194	Labrus_bergylta
ENSPMAG00000004416	-	100	33.092	ENSLACG00000011559	TDRD1	75	33.566	Latimeria_chalumnae
ENSPMAG00000004416	-	99	32.500	ENSMFAG00000043487	TDRD1	71	32.500	Macaca_fascicularis
ENSPMAG00000004416	-	99	32.500	ENSMMUG00000022517	TDRD1	71	32.500	Macaca_mulatta
ENSPMAG00000004416	-	99	32.500	ENSMNEG00000031108	TDRD1	71	32.500	Macaca_nemestrina
ENSPMAG00000004416	-	99	32.500	ENSMLEG00000032281	TDRD1	71	32.500	Mandrillus_leucophaeus
ENSPMAG00000004416	-	100	32.000	ENSMAMG00000015287	tdrd1	78	32.000	Mastacembelus_armatus
ENSPMAG00000004416	-	98	35.922	ENSMGAG00000011067	TDRD1	88	33.333	Meleagris_gallopavo
ENSPMAG00000004416	-	99	30.102	ENSMAUG00000012164	Tdrd1	73	34.667	Mesocricetus_auratus
ENSPMAG00000004416	-	100	31.034	ENSMMOG00000014068	tdrd1	77	31.034	Mola_mola
ENSPMAG00000004416	-	99	33.010	MGP_PahariEiJ_G0014583	Tdrd1	64	31.707	Mus_pahari
ENSPMAG00000004416	-	99	30.295	ENSNBRG00000017920	tdrd1	67	37.500	Neolamprologus_brichardi
ENSPMAG00000004416	-	100	34.021	ENSNLEG00000016228	TDRD1	70	34.021	Nomascus_leucogenys
ENSPMAG00000004416	-	96	33.981	ENSMEUG00000007717	TDRD1	57	35.000	Notamacropus_eugenii
ENSPMAG00000004416	-	100	35.632	ENSONIG00000016382	tdrd1	74	35.632	Oreochromis_niloticus
ENSPMAG00000004416	-	100	30.583	ENSOCUG00000025327	TDRD1	74	30.583	Oryctolagus_cuniculus
ENSPMAG00000004416	-	100	32.381	ENSORLG00000004833	tdrd1	78	30.000	Oryzias_latipes
ENSPMAG00000004416	-	100	34.043	ENSORLG00020019231	tdrd1	80	34.043	Oryzias_latipes_hni
ENSPMAG00000004416	-	100	34.043	ENSORLG00015017184	tdrd1	74	34.043	Oryzias_latipes_hsok
ENSPMAG00000004416	-	99	30.833	ENSPPAG00000041621	TDRD1	71	30.833	Pan_paniscus
ENSPMAG00000004416	-	99	30.833	ENSPTRG00000002958	TDRD1	71	30.833	Pan_troglodytes
ENSPMAG00000004416	-	99	32.500	ENSPANG00000020752	TDRD1	71	32.500	Papio_anubis
ENSPMAG00000004416	-	99	34.177	ENSPKIG00000010586	tdrd1	72	31.088	Paramormyrops_kingsleyae
ENSPMAG00000004416	-	100	30.657	ENSPSIG00000014655	TDRD1	72	30.332	Pelodiscus_sinensis
ENSPMAG00000004416	-	100	35.897	ENSPMGG00000018890	tdrd1	90	34.783	Periophthalmus_magnuspinnatus
ENSPMAG00000004416	-	99	33.784	ENSPCIG00000009739	TDRD1	72	33.784	Phascolarctos_cinereus
ENSPMAG00000004416	-	100	34.286	ENSPFOG00000002145	tdrd1	79	34.286	Poecilia_formosa
ENSPMAG00000004416	-	100	33.333	ENSPLAG00000010241	tdrd1	76	33.333	Poecilia_latipinna
ENSPMAG00000004416	-	100	36.170	ENSPMEG00000021893	tdrd1	77	36.170	Poecilia_mexicana
ENSPMAG00000004416	-	100	30.000	ENSPREG00000022663	tdrd1	75	30.000	Poecilia_reticulata
ENSPMAG00000004416	-	98	31.068	ENSPVAG00000003055	TDRD1	67	31.068	Pteropus_vampyrus
ENSPMAG00000004416	-	100	32.527	ENSPNAG00000005831	tdrd1	75	32.208	Pygocentrus_nattereri
ENSPMAG00000004416	-	99	32.500	ENSRBIG00000029668	TDRD1	73	32.500	Rhinopithecus_bieti
ENSPMAG00000004416	-	99	32.500	ENSRROG00000043379	TDRD1	71	32.500	Rhinopithecus_roxellana
ENSPMAG00000004416	-	99	30.390	ENSSHAG00000014311	TDRD1	73	30.390	Sarcophilus_harrisii
ENSPMAG00000004416	-	96	31.068	ENSSFOG00015022020	tdrd1	65	34.653	Scleropages_formosus
ENSPMAG00000004416	-	99	30.702	ENSSPUG00000005015	TDRD1	77	30.702	Sphenodon_punctatus
ENSPMAG00000004416	-	100	34.286	ENSSPAG00000018805	tdrd1	75	34.286	Stegastes_partitus
ENSPMAG00000004416	-	100	39.891	ENSTGUG00000010905	TDRD1	86	39.891	Taeniopygia_guttata
ENSPMAG00000004416	-	99	46.970	ENSTNIG00000018898	tdrd1	59	34.783	Tetraodon_nigroviridis
ENSPMAG00000004416	-	98	30.097	ENSVPAG00000004000	TDRD1	65	30.097	Vicugna_pacos
ENSPMAG00000004416	-	96	30.435	ENSVVUG00000009750	TDRD1	69	30.435	Vulpes_vulpes