EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000004439 (Gene tree)
Gene ID: -
Gene Symbol: rab20
Alias: -
Full Name: RAB20%2C member RAS oncogene family
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 2417 bases
Position: chrGL480627:13218-15634
Accession: ZDB-GENE-030131-9143
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000004858	MMR_HSR1	PF01926.23	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000004877	-	639	-	ENSPMAP00000004858	213 (aa)	-	S4RI26

Gene Model

Click here to download ENSPMAG00000004439's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000004439's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000004439	rab20	53	41.880	ENSPMAG00000001801	rab1ba	57	41.379
ENSPMAG00000004439	rab20	53	40.171	ENSPMAG00000006105	rab30	55	39.655
ENSPMAG00000004439	rab20	55	38.346	ENSPMAG00000001399	rab5c	63	37.879
ENSPMAG00000004439	rab20	52	42.241	ENSPMAG00000001403	-	57	41.739
ENSPMAG00000004439	rab20	55	37.398	ENSPMAG00000008764	RAB2B	66	36.885
ENSPMAG00000004439	rab20	52	40.870	ENSPMAG00000009335	-	55	40.351
ENSPMAG00000004439	rab20	53	37.692	ENSPMAG00000005537	rab27a	58	37.209
ENSPMAG00000004439	rab20	55	32.540	ENSPMAG00000000465	MRAS	58	32.258
ENSPMAG00000004439	rab20	53	36.752	ENSPMAG00000006171	-	55	36.207
ENSPMAG00000004439	rab20	53	42.373	ENSPMAG00000007867	rab5c	55	41.880
ENSPMAG00000004439	rab20	53	32.743	ENSPMAG00000005938	-	68	32.143
ENSPMAG00000004439	rab20	52	39.316	ENSPMAG00000005322	rab18b	56	39.316
ENSPMAG00000004439	rab20	53	38.462	ENSPMAG00000002006	-	54	37.931
ENSPMAG00000004439	rab20	58	33.846	ENSPMAG00000004657	rab36	54	32.308
ENSPMAG00000004439	rab20	53	40.678	ENSPMAG00000000008	rab5c	53	39.316

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000004439	rab20	98	45.455	ENSATEG00000011117	rab20	86	45.455	Anabas_testudineus
ENSPMAG00000004439	rab20	99	51.628	ENSAPLG00000011744	RAB20	86	50.000	Anas_platyrhynchos
ENSPMAG00000004439	rab20	98	50.237	ENSACAG00000014045	RAB20	86	50.000	Anolis_carolinensis
ENSPMAG00000004439	rab20	98	48.649	ENSAMXG00000003504	rab20	87	48.198	Astyanax_mexicanus
ENSPMAG00000004439	rab20	98	47.143	ENSCPBG00000005866	RAB20	86	47.143	Chrysemys_picta_bellii
ENSPMAG00000004439	rab20	98	51.905	ENSCSEG00000011160	rab20	86	51.659	Cynoglossus_semilaevis
ENSPMAG00000004439	rab20	99	52.558	ENSDARG00000005049	rab20	85	52.093	Danio_rerio
ENSPMAG00000004439	rab20	98	47.845	ENSELUG00000004092	rab20	85	46.983	Esox_lucius
ENSPMAG00000004439	rab20	99	50.698	ENSFALG00000004409	RAB20	86	50.000	Ficedula_albicollis
ENSPMAG00000004439	rab20	98	53.110	ENSGACG00000003527	rab20	84	53.110	Gasterosteus_aculeatus
ENSPMAG00000004439	rab20	98	50.435	ENSHCOG00000013468	rab20	84	48.458	Hippocampus_comes
ENSPMAG00000004439	rab20	98	50.467	ENSIPUG00000018288	RAB20	84	49.533	Ictalurus_punctatus
ENSPMAG00000004439	rab20	98	50.467	ENSIPUG00000000432	RAB20	84	49.533	Ictalurus_punctatus
ENSPMAG00000004439	rab20	100	45.794	ENSLACG00000011001	RAB20	87	45.327	Latimeria_chalumnae
ENSPMAG00000004439	rab20	99	48.052	ENSMAMG00000015214	rab20	85	47.186	Mastacembelus_armatus
ENSPMAG00000004439	rab20	98	51.415	ENSMMOG00000020022	rab20	85	50.943	Mola_mola
ENSPMAG00000004439	rab20	98	46.948	ENSMEUG00000009442	RAB20	86	47.143	Notamacropus_eugenii
ENSPMAG00000004439	rab20	98	51.152	ENSPNAG00000008867	rab20	86	50.917	Pygocentrus_nattereri
ENSPMAG00000004439	rab20	98	49.345	ENSSMAG00000018818	rab20	86	49.345	Scophthalmus_maximus
ENSPMAG00000004439	rab20	98	48.485	ENSSDUG00000005148	rab20	84	48.052	Seriola_dumerili
ENSPMAG00000004439	rab20	99	51.163	ENSTGUG00000008797	RAB20	86	50.476	Taeniopygia_guttata
ENSPMAG00000004439	rab20	98	48.052	ENSTRUG00000022951	rab20	85	46.983	Takifugu_rubripes
ENSPMAG00000004439	rab20	98	51.174	ENSTNIG00000013920	rab20	85	49.282	Tetraodon_nigroviridis