EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000004618 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 8360 bases
Position: chrGL482366:4073-12432
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000005077	RRM_1	PF00076.22	4.5e-15	1	2
ENSPMAP00000005077	RRM_1	PF00076.22	4.5e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000005096	-	987	-	ENSPMAP00000005077	329 (aa)	-	S4RIP5

Gene Model

Click here to download ENSPMAG00000004618's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000004618's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000004618	pspc1	84	48.364	ENSPMAG00000005583	sfpq	57	48.364

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000004618	pspc1	79	47.692	ENSG00000121390	PSPC1	81	43.333	Homo_sapiens
ENSPMAG00000004618	pspc1	84	44.484	ENSAPOG00000015946	pspc1	66	44.444	Acanthochromis_polyacanthus
ENSPMAG00000004618	pspc1	91	44.000	ENSACIG00000018695	pspc1	59	44.000	Amphilophus_citrinellus
ENSPMAG00000004618	pspc1	87	44.211	ENSAOCG00000005279	pspc1	65	44.792	Amphiprion_ocellaris
ENSPMAG00000004618	pspc1	87	44.211	ENSAPEG00000015927	pspc1	65	44.792	Amphiprion_percula
ENSPMAG00000004618	pspc1	83	44.891	ENSATEG00000004878	pspc1	55	44.097	Anabas_testudineus
ENSPMAG00000004618	pspc1	64	49.282	ENSAPLG00000006246	PSPC1	50	49.282	Anas_platyrhynchos
ENSPMAG00000004618	pspc1	91	43.791	ENSAPLG00000003643	SFPQ	53	44.523	Anas_platyrhynchos
ENSPMAG00000004618	pspc1	82	46.667	ENSACAG00000002093	PSPC1	54	44.218	Anolis_carolinensis
ENSPMAG00000004618	pspc1	88	44.792	ENSANAG00000000059	PSPC1	71	44.792	Aotus_nancymaae
ENSPMAG00000004618	pspc1	90	42.230	ENSACLG00000027220	pspc1	61	42.230	Astatotilapia_calliptera
ENSPMAG00000004618	pspc1	79	46.538	ENSAMXG00000036881	pspc1	54	44.631	Astyanax_mexicanus
ENSPMAG00000004618	pspc1	92	44.805	ENSBTAG00000003934	PSPC1	58	44.918	Bos_taurus
ENSPMAG00000004618	pspc1	88	44.792	ENSCJAG00000004554	PSPC1	56	44.912	Callithrix_jacchus
ENSPMAG00000004618	pspc1	79	47.692	ENSCAFG00020002009	PSPC1	71	44.948	Canis_lupus_dingo
ENSPMAG00000004618	pspc1	92	44.805	ENSCHIG00000016708	PSPC1	57	44.805	Capra_hircus
ENSPMAG00000004618	pspc1	79	47.692	ENSCPOG00000000395	PSPC1	75	44.079	Cavia_porcellus
ENSPMAG00000004618	pspc1	88	44.792	ENSCCAG00000033498	PSPC1	54	44.792	Cebus_capucinus
ENSPMAG00000004618	pspc1	79	47.692	ENSCATG00000036434	PSPC1	77	44.948	Cercocebus_atys
ENSPMAG00000004618	pspc1	88	45.361	ENSCHOG00000008913	PSPC1	54	45.361	Choloepus_hoffmanni
ENSPMAG00000004618	pspc1	62	49.756	ENSCANG00000018948	PSPC1	66	49.756	Colobus_angolensis_palliatus
ENSPMAG00000004618	pspc1	80	45.038	ENSCVAG00000007679	-	56	42.568	Cyprinodon_variegatus
ENSPMAG00000004618	pspc1	93	41.967	ENSDARG00000006621	pspc1	56	41.967	Danio_rerio
ENSPMAG00000004618	pspc1	87	44.599	ENSDORG00000016050	Pspc1	53	44.444	Dipodomys_ordii
ENSPMAG00000004618	pspc1	92	46.809	ENSEBUG00000010133	pspc1	79	47.604	Eptatretus_burgeri
ENSPMAG00000004618	pspc1	79	47.692	ENSEASG00005000119	PSPC1	72	44.637	Equus_asinus_asinus
ENSPMAG00000004618	pspc1	79	47.692	ENSECAG00000017286	PSPC1	72	44.637	Equus_caballus
ENSPMAG00000004618	pspc1	78	42.412	ENSEEUG00000011288	-	55	40.830	Erinaceus_europaeus
ENSPMAG00000004618	pspc1	88	45.862	ENSELUG00000003746	pspc1	68	45.862	Esox_lucius
ENSPMAG00000004618	pspc1	79	47.692	ENSFCAG00000027841	PSPC1	71	44.948	Felis_catus
ENSPMAG00000004618	pspc1	85	45.907	ENSFALG00000008750	PSPC1	54	45.361	Ficedula_albicollis
ENSPMAG00000004618	pspc1	79	47.692	ENSFDAG00000002617	PSPC1	50	47.692	Fukomys_damarensis
ENSPMAG00000004618	pspc1	88	45.517	ENSGMOG00000015074	pspc1	51	46.442	Gadus_morhua
ENSPMAG00000004618	pspc1	79	48.077	ENSGALG00000017142	PSPC1	54	45.361	Gallus_gallus
ENSPMAG00000004618	pspc1	89	43.197	ENSGAFG00000006327	pspc1	60	43.197	Gambusia_affinis
ENSPMAG00000004618	pspc1	81	42.697	ENSGACG00000014901	pspc1	73	42.697	Gasterosteus_aculeatus
ENSPMAG00000004618	pspc1	79	47.692	ENSGGOG00000003414	PSPC1	71	44.948	Gorilla_gorilla
ENSPMAG00000004618	pspc1	89	42.177	ENSHBUG00000001139	pspc1	55	42.177	Haplochromis_burtoni
ENSPMAG00000004618	pspc1	79	47.692	ENSHGLG00100007962	PSPC1	78	47.692	Heterocephalus_glaber_male
ENSPMAG00000004618	pspc1	89	41.611	ENSHCOG00000013251	pspc1	65	41.611	Hippocampus_comes
ENSPMAG00000004618	pspc1	90	44.595	ENSIPUG00000013192	pspc1	57	42.953	Ictalurus_punctatus
ENSPMAG00000004618	pspc1	88	44.792	ENSSTOG00000026833	PSPC1	71	44.792	Ictidomys_tridecemlineatus
ENSPMAG00000004618	pspc1	82	37.918	ENSKMAG00000013525	-	66	37.710	Kryptolebias_marmoratus
ENSPMAG00000004618	pspc1	89	40.264	ENSLBEG00000004474	pspc1	63	40.264	Labrus_bergylta
ENSPMAG00000004618	pspc1	79	47.692	ENSLACG00000010762	PSPC1	50	47.015	Latimeria_chalumnae
ENSPMAG00000004618	pspc1	79	47.308	ENSLOCG00000010832	pspc1	50	47.308	Lepisosteus_oculatus
ENSPMAG00000004618	pspc1	79	47.692	ENSMFAG00000032728	PSPC1	71	47.692	Macaca_fascicularis
ENSPMAG00000004618	pspc1	79	47.692	ENSMMUG00000020262	PSPC1	69	47.692	Macaca_mulatta
ENSPMAG00000004618	pspc1	79	47.692	ENSMNEG00000027401	PSPC1	54	47.692	Macaca_nemestrina
ENSPMAG00000004618	pspc1	85	43.011	ENSMAMG00000004333	pspc1	58	41.638	Mastacembelus_armatus
ENSPMAG00000004618	pspc1	90	42.230	ENSMZEG00005005726	pspc1	61	42.230	Maylandia_zebra
ENSPMAG00000004618	pspc1	64	49.282	ENSMGAG00000015134	PSPC1	50	49.282	Meleagris_gallopavo
ENSPMAG00000004618	pspc1	84	45.205	ENSMAUG00000021067	Pspc1	55	47.860	Mesocricetus_auratus
ENSPMAG00000004618	pspc1	87	44.755	ENSMICG00000013970	PSPC1	71	44.755	Microcebus_murinus
ENSPMAG00000004618	pspc1	87	34.722	ENSMMOG00000004352	pspc1	51	34.722	Mola_mola
ENSPMAG00000004618	pspc1	81	43.820	ENSMALG00000008914	pspc1	59	41.497	Monopterus_albus
ENSPMAG00000004618	pspc1	79	47.692	MGP_CAROLIEiJ_G0019341	Pspc1	84	38.776	Mus_caroli
ENSPMAG00000004618	pspc1	79	47.692	ENSMUSG00000021938	Pspc1	83	38.776	Mus_musculus
ENSPMAG00000004618	pspc1	79	47.692	MGP_PahariEiJ_G0030359	Pspc1	84	38.776	Mus_pahari
ENSPMAG00000004618	pspc1	79	47.692	MGP_SPRETEiJ_G0020232	Pspc1	84	38.776	Mus_spretus
ENSPMAG00000004618	pspc1	79	46.768	ENSMLUG00000017663	PSPC1	54	45.172	Myotis_lucifugus
ENSPMAG00000004618	pspc1	91	42.295	ENSNBRG00000014059	pspc1	72	42.295	Neolamprologus_brichardi
ENSPMAG00000004618	pspc1	79	46.538	ENSODEG00000019012	-	50	46.538	Octodon_degus
ENSPMAG00000004618	pspc1	89	42.177	ENSONIG00000012010	pspc1	55	42.177	Oreochromis_niloticus
ENSPMAG00000004618	pspc1	62	49.756	ENSOANG00000009017	-	50	49.756	Ornithorhynchus_anatinus
ENSPMAG00000004618	pspc1	89	44.369	ENSOANG00000011381	-	55	44.815	Ornithorhynchus_anatinus
ENSPMAG00000004618	pspc1	79	47.692	ENSOCUG00000006153	PSPC1	53	45.139	Oryctolagus_cuniculus
ENSPMAG00000004618	pspc1	83	43.956	ENSORLG00000004232	-	57	43.197	Oryzias_latipes
ENSPMAG00000004618	pspc1	79	45.000	ENSORLG00020000578	PSPC1	57	42.857	Oryzias_latipes_hni
ENSPMAG00000004618	pspc1	79	45.385	ENSORLG00015017480	pspc1	57	43.197	Oryzias_latipes_hsok
ENSPMAG00000004618	pspc1	56	47.283	ENSOMEG00000003779	pspc1	84	47.514	Oryzias_melastigma
ENSPMAG00000004618	pspc1	86	45.070	ENSOGAG00000012643	PSPC1	53	45.070	Otolemur_garnettii
ENSPMAG00000004618	pspc1	79	48.077	ENSOARG00000014163	PSPC1	52	48.077	Ovis_aries
ENSPMAG00000004618	pspc1	83	45.788	ENSPPAG00000009836	PSPC1	79	44.828	Pan_paniscus
ENSPMAG00000004618	pspc1	79	47.692	ENSPPRG00000008833	PSPC1	53	44.948	Panthera_pardus
ENSPMAG00000004618	pspc1	79	47.692	ENSPTRG00000005677	PSPC1	77	45.070	Pan_troglodytes
ENSPMAG00000004618	pspc1	79	47.692	ENSPANG00000001992	PSPC1	70	47.692	Papio_anubis
ENSPMAG00000004618	pspc1	89	43.051	ENSPMGG00000015135	pspc1	80	43.051	Periophthalmus_magnuspinnatus
ENSPMAG00000004618	pspc1	91	43.137	ENSPFOG00000003362	pspc1	59	43.137	Poecilia_formosa
ENSPMAG00000004618	pspc1	91	43.137	ENSPLAG00000011540	pspc1	58	43.137	Poecilia_latipinna
ENSPMAG00000004618	pspc1	91	43.137	ENSPMEG00000008322	pspc1	58	43.137	Poecilia_mexicana
ENSPMAG00000004618	pspc1	91	43.137	ENSPREG00000007786	pspc1	58	43.137	Poecilia_reticulata
ENSPMAG00000004618	pspc1	79	47.692	ENSPPYG00000005186	PSPC1	54	47.692	Pongo_abelii
ENSPMAG00000004618	pspc1	79	47.692	ENSPCOG00000014364	PSPC1	50	47.692	Propithecus_coquereli
ENSPMAG00000004618	pspc1	79	47.692	ENSPVAG00000005036	PSPC1	53	45.105	Pteropus_vampyrus
ENSPMAG00000004618	pspc1	88	42.708	ENSPNYG00000008893	pspc1	59	42.708	Pundamilia_nyererei
ENSPMAG00000004618	pspc1	81	46.816	ENSPNAG00000016511	pspc1	62	45.695	Pygocentrus_nattereri
ENSPMAG00000004618	pspc1	87	44.755	ENSRNOG00000020782	Pspc1	60	44.755	Rattus_norvegicus
ENSPMAG00000004618	pspc1	89	44.558	ENSRBIG00000036057	PSPC1	78	44.558	Rhinopithecus_bieti
ENSPMAG00000004618	pspc1	89	44.558	ENSRROG00000036334	PSPC1	71	44.558	Rhinopithecus_roxellana
ENSPMAG00000004618	pspc1	62	49.756	ENSSBOG00000028172	PSPC1	65	49.756	Saimiri_boliviensis_boliviensis
ENSPMAG00000004618	pspc1	81	45.318	ENSSFOG00015001395	pspc1	56	45.318	Scleropages_formosus
ENSPMAG00000004618	pspc1	93	40.952	ENSSMAG00000001761	pspc1	66	42.435	Scophthalmus_maximus
ENSPMAG00000004618	pspc1	81	43.820	ENSSDUG00000010651	pspc1	53	41.497	Seriola_dumerili
ENSPMAG00000004618	pspc1	81	43.820	ENSSLDG00000004284	pspc1	59	41.781	Seriola_lalandi_dorsalis
ENSPMAG00000004618	pspc1	78	47.860	ENSSARG00000000888	PSPC1	53	45.645	Sorex_araneus
ENSPMAG00000004618	pspc1	78	48.249	ENSSPUG00000008550	PSPC1	51	48.249	Sphenodon_punctatus
ENSPMAG00000004618	pspc1	84	43.885	ENSSPAG00000001921	pspc1	54	43.537	Stegastes_partitus
ENSPMAG00000004618	pspc1	79	48.077	ENSSSCG00000009569	PSPC1	76	45.277	Sus_scrofa
ENSPMAG00000004618	pspc1	79	48.077	ENSTGUG00000011295	PSPC1	54	48.077	Taeniopygia_guttata
ENSPMAG00000004618	pspc1	84	41.091	ENSTRUG00000011335	pspc1	52	41.091	Takifugu_rubripes
ENSPMAG00000004618	pspc1	88	40.690	ENSTNIG00000010358	pspc1	56	40.590	Tetraodon_nigroviridis
ENSPMAG00000004618	pspc1	79	44.015	ENSTBEG00000002361	PSPC1	54	42.509	Tupaia_belangeri
ENSPMAG00000004618	pspc1	92	44.918	ENSTTRG00000003343	PSPC1	56	44.918	Tursiops_truncatus
ENSPMAG00000004618	pspc1	79	47.692	ENSUAMG00000012309	PSPC1	73	47.692	Ursus_americanus
ENSPMAG00000004618	pspc1	79	47.692	ENSUMAG00000013993	PSPC1	78	44.558	Ursus_maritimus
ENSPMAG00000004618	pspc1	62	49.756	ENSVPAG00000010029	PSPC1	50	49.756	Vicugna_pacos
ENSPMAG00000004618	pspc1	79	47.692	ENSVVUG00000006414	PSPC1	72	44.948	Vulpes_vulpes
ENSPMAG00000004618	pspc1	89	43.537	ENSXCOG00000017438	pspc1	68	43.537	Xiphophorus_couchianus
ENSPMAG00000004618	pspc1	89	43.878	ENSXMAG00000007929	pspc1	68	43.878	Xiphophorus_maculatus