EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000005004 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: -
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 7942 bases
Position: chrGL476410:579511-587452
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000005497	SMN	PF06003.12	7e-69	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000005517	-	864	-	ENSPMAP00000005497	287 (aa)	-	S4RJW4

Gene Model

Click here to download ENSPMAG00000005004's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000005004's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000005004	smn1	91	41.219	ENSG00000172062	SMN1	90	41.045	Homo_sapiens
ENSPMAG00000005004	smn1	91	41.219	ENSG00000205571	SMN2	70	68.750	Homo_sapiens
ENSPMAG00000005004	smn1	91	36.491	ENSAPOG00000011324	smn1	92	41.111	Acanthochromis_polyacanthus
ENSPMAG00000005004	smn1	91	41.852	ENSAMEG00000003316	-	93	41.608	Ailuropoda_melanoleuca
ENSPMAG00000005004	smn1	87	34.944	ENSACIG00000019772	-	95	35.115	Amphilophus_citrinellus
ENSPMAG00000005004	smn1	91	38.433	ENSAOCG00000024444	smn1	92	40.659	Amphiprion_ocellaris
ENSPMAG00000005004	smn1	91	38.806	ENSAPEG00000016504	smn1	94	41.176	Amphiprion_percula
ENSPMAG00000005004	smn1	88	39.015	ENSATEG00000002182	smn1	77	40.385	Anabas_testudineus
ENSPMAG00000005004	smn1	69	42.574	ENSAPLG00000010912	-	98	40.284	Anas_platyrhynchos
ENSPMAG00000005004	smn1	94	40.942	ENSACAG00000010017	-	91	43.071	Anolis_carolinensis
ENSPMAG00000005004	smn1	67	38.000	ENSANAG00000032133	-	89	41.392	Aotus_nancymaae
ENSPMAG00000005004	smn1	97	39.298	ENSBTAG00000005743	SMN2	97	41.404	Bos_taurus
ENSPMAG00000005004	smn1	91	38.376	ENSCJAG00000016290	-	89	42.279	Callithrix_jacchus
ENSPMAG00000005004	smn1	91	41.971	ENSCAFG00000007812	SMN	97	40.830	Canis_familiaris
ENSPMAG00000005004	smn1	91	41.971	ENSCAFG00020019229	-	90	40.830	Canis_lupus_dingo
ENSPMAG00000005004	smn1	91	40.590	ENSCHIG00000015559	-	88	42.164	Capra_hircus
ENSPMAG00000005004	smn1	95	41.034	ENSTSYG00000012058	-	90	41.481	Carlito_syrichta
ENSPMAG00000005004	smn1	64	39.572	ENSCAPG00000011021	-	82	42.328	Cavia_aperea
ENSPMAG00000005004	smn1	96	40.690	ENSCPOG00000012328	-	90	43.704	Cavia_porcellus
ENSPMAG00000005004	smn1	96	40.283	ENSCPOG00000036973	-	89	43.346	Cavia_porcellus
ENSPMAG00000005004	smn1	52	44.586	ENSCCAG00000018127	-	89	41.948	Cebus_capucinus
ENSPMAG00000005004	smn1	91	39.785	ENSCATG00000037002	-	90	39.544	Cercocebus_atys
ENSPMAG00000005004	smn1	99	41.017	ENSCLAG00000000284	-	92	40.942	Chinchilla_lanigera
ENSPMAG00000005004	smn1	91	40.433	ENSCSAG00000015688	-	89	41.791	Chlorocebus_sabaeus
ENSPMAG00000005004	smn1	85	37.302	ENSCHOG00000007346	-	99	37.302	Choloepus_hoffmanni
ENSPMAG00000005004	smn1	95	40.559	ENSCPBG00000010968	-	99	43.431	Chrysemys_picta_bellii
ENSPMAG00000005004	smn1	93	38.163	ENSCANG00000033324	-	86	39.544	Colobus_angolensis_palliatus
ENSPMAG00000005004	smn1	94	40.418	ENSCANG00000038242	-	91	42.412	Colobus_angolensis_palliatus
ENSPMAG00000005004	smn1	67	37.824	ENSCGRG00001016998	-	80	37.073	Cricetulus_griseus_chok1gshd
ENSPMAG00000005004	smn1	96	41.438	ENSCGRG00001017959	-	97	40.972	Cricetulus_griseus_chok1gshd
ENSPMAG00000005004	smn1	96	41.438	ENSCGRG00000007698	Smn1	97	40.972	Cricetulus_griseus_crigri
ENSPMAG00000005004	smn1	92	36.129	ENSCSEG00000015227	smn1	94	39.583	Cynoglossus_semilaevis
ENSPMAG00000005004	smn1	91	37.500	ENSCVAG00000007498	smn1	92	42.279	Cyprinodon_variegatus
ENSPMAG00000005004	smn1	70	40.291	ENSDNOG00000007283	-	84	40.777	Dasypus_novemcinctus
ENSPMAG00000005004	smn1	67	43.902	ENSDORG00000007082	Smn1	72	42.000	Dipodomys_ordii
ENSPMAG00000005004	smn1	96	32.087	ENSEBUG00000011902	smn1	94	36.140	Eptatretus_burgeri
ENSPMAG00000005004	smn1	86	36.965	ENSEASG00005018000	-	89	39.080	Equus_asinus_asinus
ENSPMAG00000005004	smn1	91	39.630	ENSECAG00000015215	-	97	40.972	Equus_caballus
ENSPMAG00000005004	smn1	85	36.462	ENSEEUG00000015777	-	99	38.610	Erinaceus_europaeus
ENSPMAG00000005004	smn1	93	39.384	ENSELUG00000018067	smn1	93	41.304	Esox_lucius
ENSPMAG00000005004	smn1	96	39.792	ENSFCAG00000028292	SMN	90	41.544	Felis_catus
ENSPMAG00000005004	smn1	92	42.182	ENSFALG00000012320	-	93	44.000	Ficedula_albicollis
ENSPMAG00000005004	smn1	99	39.465	ENSFDAG00000017683	-	98	40.803	Fukomys_damarensis
ENSPMAG00000005004	smn1	99	32.781	ENSGMOG00000017279	smn1	93	37.102	Gadus_morhua
ENSPMAG00000005004	smn1	94	44.203	ENSGALG00000002430	SMN	98	42.264	Gallus_gallus
ENSPMAG00000005004	smn1	89	40.824	ENSGAFG00000009501	smn1	92	40.293	Gambusia_affinis
ENSPMAG00000005004	smn1	91	38.346	ENSGACG00000010584	smn1	89	39.535	Gasterosteus_aculeatus
ENSPMAG00000005004	smn1	55	43.030	ENSGAGG00000011374	-	94	42.599	Gopherus_agassizii
ENSPMAG00000005004	smn1	90	34.363	ENSGAGG00000013639	-	92	34.252	Gopherus_agassizii
ENSPMAG00000005004	smn1	52	45.000	ENSGGOG00000026704	-	88	40.191	Gorilla_gorilla
ENSPMAG00000005004	smn1	52	45.000	ENSGGOG00000003872	-	89	38.403	Gorilla_gorilla
ENSPMAG00000005004	smn1	91	37.638	ENSHBUG00000013987	smn1	91	40.755	Haplochromis_burtoni
ENSPMAG00000005004	smn1	99	41.497	ENSHGLG00000001905	-	99	40.893	Heterocephalus_glaber_female
ENSPMAG00000005004	smn1	99	39.867	ENSHGLG00000001018	-	91	41.219	Heterocephalus_glaber_female
ENSPMAG00000005004	smn1	99	39.867	ENSHGLG00100011252	-	91	41.219	Heterocephalus_glaber_male
ENSPMAG00000005004	smn1	94	41.935	ENSHGLG00100018676	-	99	41.304	Heterocephalus_glaber_male
ENSPMAG00000005004	smn1	89	36.861	ENSHCOG00000017136	smn1	84	40.441	Hippocampus_comes
ENSPMAG00000005004	smn1	93	40.647	ENSIPUG00000012580	smn1	83	41.993	Ictalurus_punctatus
ENSPMAG00000005004	smn1	88	40.769	ENSSTOG00000012288	-	91	41.797	Ictidomys_tridecemlineatus
ENSPMAG00000005004	smn1	91	35.664	ENSKMAG00000007239	smn1	96	39.706	Kryptolebias_marmoratus
ENSPMAG00000005004	smn1	91	38.163	ENSLBEG00000022550	smn1	94	41.071	Labrus_bergylta
ENSPMAG00000005004	smn1	88	37.153	ENSLACG00000009808	-	93	38.062	Latimeria_chalumnae
ENSPMAG00000005004	smn1	94	40.925	ENSLOCG00000011339	smn1	95	43.165	Lepisosteus_oculatus
ENSPMAG00000005004	smn1	89	31.868	ENSLOCG00000000801	-	87	31.868	Lepisosteus_oculatus
ENSPMAG00000005004	smn1	96	40.625	ENSLAFG00000003425	-	99	32.584	Loxodonta_africana
ENSPMAG00000005004	smn1	91	41.155	ENSMFAG00000031523	SMN1	95	40.892	Macaca_fascicularis
ENSPMAG00000005004	smn1	94	37.500	ENSMFAG00000008812	-	89	38.662	Macaca_fascicularis
ENSPMAG00000005004	smn1	94	37.153	ENSMMUG00000030594	-	89	38.290	Macaca_mulatta
ENSPMAG00000005004	smn1	91	41.155	ENSMMUG00000020214	SMN1	90	41.985	Macaca_mulatta
ENSPMAG00000005004	smn1	93	40.780	ENSMNEG00000035094	-	90	41.985	Macaca_nemestrina
ENSPMAG00000005004	smn1	64	34.184	ENSMNEG00000036423	-	75	34.555	Macaca_nemestrina
ENSPMAG00000005004	smn1	91	41.155	ENSMLEG00000041902	-	91	41.985	Mandrillus_leucophaeus
ENSPMAG00000005004	smn1	91	37.918	ENSMAMG00000011034	smn1	92	42.238	Mastacembelus_armatus
ENSPMAG00000005004	smn1	91	37.132	ENSMZEG00005013634	smn1	91	40.755	Maylandia_zebra
ENSPMAG00000005004	smn1	69	43.842	ENSMGAG00000008889	-	96	43.719	Meleagris_gallopavo
ENSPMAG00000005004	smn1	56	44.379	ENSMAUG00000010262	Smn1	97	40.411	Mesocricetus_auratus
ENSPMAG00000005004	smn1	52	45.625	ENSMICG00000034708	-	94	39.640	Microcebus_murinus
ENSPMAG00000005004	smn1	96	41.404	ENSMOCG00000017833	Smn1	97	40.972	Microtus_ochrogaster
ENSPMAG00000005004	smn1	92	38.406	ENSMMOG00000005504	smn1	94	40.364	Mola_mola
ENSPMAG00000005004	smn1	95	39.643	ENSMODG00000001436	-	89	43.130	Monodelphis_domestica
ENSPMAG00000005004	smn1	91	38.148	ENSMALG00000008025	smn1	92	42.491	Monopterus_albus
ENSPMAG00000005004	smn1	96	40.210	MGP_CAROLIEiJ_G0018836	Smn1	97	40.283	Mus_caroli
ENSPMAG00000005004	smn1	96	40.559	ENSMUSG00000021645	Smn1	97	40.351	Mus_musculus
ENSPMAG00000005004	smn1	56	43.787	MGP_PahariEiJ_G0015911	Smn1	90	40.304	Mus_pahari
ENSPMAG00000005004	smn1	96	41.259	MGP_SPRETEiJ_G0019718	Smn1	97	40.351	Mus_spretus
ENSPMAG00000005004	smn1	94	40.989	ENSMPUG00000014470	-	98	40.780	Mustela_putorius_furo
ENSPMAG00000005004	smn1	91	41.727	ENSMLUG00000010603	-	92	40.000	Myotis_lucifugus
ENSPMAG00000005004	smn1	95	41.754	ENSNGAG00000019833	Smn1	90	42.254	Nannospalax_galili
ENSPMAG00000005004	smn1	96	40.614	ENSNLEG00000004454	-	90	41.045	Nomascus_leucogenys
ENSPMAG00000005004	smn1	85	42.188	ENSOPRG00000002015	-	99	43.798	Ochotona_princeps
ENSPMAG00000005004	smn1	93	41.935	ENSODEG00000015976	-	96	42.960	Octodon_degus
ENSPMAG00000005004	smn1	94	40.989	ENSOANG00000001626	-	94	43.011	Ornithorhynchus_anatinus
ENSPMAG00000005004	smn1	67	38.424	ENSOCUG00000025183	-	74	40.291	Oryctolagus_cuniculus
ENSPMAG00000005004	smn1	99	37.919	ENSOCUG00000026649	-	92	41.877	Oryctolagus_cuniculus
ENSPMAG00000005004	smn1	95	39.576	ENSOCUG00000017097	-	89	42.912	Oryctolagus_cuniculus
ENSPMAG00000005004	smn1	91	40.149	ENSORLG00000010552	smn1	92	39.502	Oryzias_latipes
ENSPMAG00000005004	smn1	91	38.007	ENSORLG00020007936	smn1	91	36.879	Oryzias_latipes_hni
ENSPMAG00000005004	smn1	91	39.259	ENSORLG00015022425	smn1	92	39.568	Oryzias_latipes_hsok
ENSPMAG00000005004	smn1	91	38.376	ENSOMEG00000007824	smn1	92	40.511	Oryzias_melastigma
ENSPMAG00000005004	smn1	88	40.221	ENSOGAG00000031414	-	95	40.071	Otolemur_garnettii
ENSPMAG00000005004	smn1	91	40.149	ENSOARG00000005425	-	96	41.791	Ovis_aries
ENSPMAG00000005004	smn1	91	41.219	ENSPPAG00000036640	-	90	41.045	Pan_paniscus
ENSPMAG00000005004	smn1	96	39.446	ENSPPRG00000005575	-	90	41.544	Panthera_pardus
ENSPMAG00000005004	smn1	96	39.655	ENSPTIG00000007745	-	90	41.392	Panthera_tigris_altaica
ENSPMAG00000005004	smn1	91	41.135	ENSPTRG00000016955	-	91	40.659	Pan_troglodytes
ENSPMAG00000005004	smn1	96	40.550	ENSPANG00000013601	-	89	41.264	Papio_anubis
ENSPMAG00000005004	smn1	97	38.644	ENSPANG00000000253	-	95	40.070	Papio_anubis
ENSPMAG00000005004	smn1	93	41.176	ENSPKIG00000011096	smn1	95	41.392	Paramormyrops_kingsleyae
ENSPMAG00000005004	smn1	92	41.241	ENSPSIG00000014787	-	86	43.431	Pelodiscus_sinensis
ENSPMAG00000005004	smn1	92	36.861	ENSPMGG00000012285	smn1	91	38.039	Periophthalmus_magnuspinnatus
ENSPMAG00000005004	smn1	57	42.105	ENSPCIG00000025764	-	90	44.275	Phascolarctos_cinereus
ENSPMAG00000005004	smn1	89	40.824	ENSPFOG00000007786	smn1	92	41.636	Poecilia_formosa
ENSPMAG00000005004	smn1	89	41.199	ENSPLAG00000012071	smn1	92	42.007	Poecilia_latipinna
ENSPMAG00000005004	smn1	89	40.824	ENSPMEG00000017085	smn1	92	41.636	Poecilia_mexicana
ENSPMAG00000005004	smn1	90	41.045	ENSPREG00000005824	smn1	92	42.007	Poecilia_reticulata
ENSPMAG00000005004	smn1	52	37.267	ENSPPYG00000019189	-	100	32.389	Pongo_abelii
ENSPMAG00000005004	smn1	90	40.072	ENSPPYG00000015533	-	95	40.876	Pongo_abelii
ENSPMAG00000005004	smn1	89	40.000	ENSPCAG00000004187	-	97	40.755	Procavia_capensis
ENSPMAG00000005004	smn1	67	37.561	ENSPCOG00000022307	-	92	36.364	Propithecus_coquereli
ENSPMAG00000005004	smn1	91	42.391	ENSPVAG00000005977	-	96	42.612	Pteropus_vampyrus
ENSPMAG00000005004	smn1	96	41.958	ENSRNOG00000018067	Smn1	96	42.756	Rattus_norvegicus
ENSPMAG00000005004	smn1	91	41.155	ENSRBIG00000037052	-	89	40.892	Rhinopithecus_bieti
ENSPMAG00000005004	smn1	55	40.936	ENSRBIG00000036775	-	85	36.965	Rhinopithecus_bieti
ENSPMAG00000005004	smn1	91	41.155	ENSRROG00000039399	-	90	41.603	Rhinopithecus_roxellana
ENSPMAG00000005004	smn1	95	38.214	ENSRROG00000031088	-	88	39.544	Rhinopithecus_roxellana
ENSPMAG00000005004	smn1	91	38.376	ENSSBOG00000011665	-	89	42.537	Saimiri_boliviensis_boliviensis
ENSPMAG00000005004	smn1	57	41.520	ENSSHAG00000001499	-	95	43.511	Sarcophilus_harrisii
ENSPMAG00000005004	smn1	93	35.075	ENSSFOG00015015507	smn1	95	39.568	Scleropages_formosus
ENSPMAG00000005004	smn1	91	35.943	ENSSMAG00000007922	smn1	91	41.852	Scophthalmus_maximus
ENSPMAG00000005004	smn1	91	34.737	ENSSDUG00000018533	smn1	92	40.146	Seriola_dumerili
ENSPMAG00000005004	smn1	91	35.088	ENSSLDG00000021135	smn1	92	40.511	Seriola_lalandi_dorsalis
ENSPMAG00000005004	smn1	98	44.097	ENSSPUG00000000373	-	95	44.526	Sphenodon_punctatus
ENSPMAG00000005004	smn1	91	40.672	ENSSPAG00000004345	smn1	92	40.892	Stegastes_partitus
ENSPMAG00000005004	smn1	59	56.098	ENSSSCG00000029127	-	87	33.208	Sus_scrofa
ENSPMAG00000005004	smn1	91	41.818	ENSSSCG00000016970	-	89	42.279	Sus_scrofa
ENSPMAG00000005004	smn1	92	41.155	ENSTGUG00000001548	-	92	42.586	Taeniopygia_guttata
ENSPMAG00000005004	smn1	58	42.197	ENSTBEG00000002399	-	98	41.463	Tupaia_belangeri
ENSPMAG00000005004	smn1	55	41.104	ENSTTRG00000005080	-	88	40.840	Tursiops_truncatus
ENSPMAG00000005004	smn1	55	41.718	ENSUAMG00000024947	-	77	39.151	Ursus_americanus
ENSPMAG00000005004	smn1	91	41.852	ENSUMAG00000007842	-	72	40.972	Ursus_maritimus
ENSPMAG00000005004	smn1	88	37.692	ENSVPAG00000009887	-	69	59.259	Vicugna_pacos
ENSPMAG00000005004	smn1	91	41.971	ENSVVUG00000006934	-	97	40.830	Vulpes_vulpes
ENSPMAG00000005004	smn1	94	43.772	ENSXETG00000018189	smn2	91	45.818	Xenopus_tropicalis
ENSPMAG00000005004	smn1	89	40.377	ENSXMAG00000001521	smn1	92	40.659	Xiphophorus_maculatus