EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000005248 (Gene tree)
Gene ID: -
Gene Symbol: prdm5
Alias: -
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 93635 bases
Position: chrGL476494:40192-133826
Accession: ZDB-GENE-040708-1
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000005770	zf-C2H2	PF00096.26	8.3e-58	1	7
ENSPMAP00000005770	zf-C2H2	PF00096.26	8.3e-58	2	7
ENSPMAP00000005770	zf-C2H2	PF00096.26	8.3e-58	3	7
ENSPMAP00000005770	zf-C2H2	PF00096.26	8.3e-58	4	7
ENSPMAP00000005770	zf-C2H2	PF00096.26	8.3e-58	5	7
ENSPMAP00000005770	zf-C2H2	PF00096.26	8.3e-58	6	7
ENSPMAP00000005770	zf-C2H2	PF00096.26	8.3e-58	7	7
ENSPMAP00000005770	zf-met	PF12874.7	2.2e-26	1	5
ENSPMAP00000005770	zf-met	PF12874.7	2.2e-26	2	5
ENSPMAP00000005770	zf-met	PF12874.7	2.2e-26	3	5
ENSPMAP00000005770	zf-met	PF12874.7	2.2e-26	4	5
ENSPMAP00000005770	zf-met	PF12874.7	2.2e-26	5	5
ENSPMAP00000005770	zf-C2H2_jaz	PF12171.8	9.2e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000005796	-	1131	-	ENSPMAP00000005770	377 (aa)	-	S4RKN7

Gene Model

Click here to download ENSPMAG00000005248's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000005248's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000005248	prdm5	92	41.406	ENSPMAG00000003606	-	74	41.406
ENSPMAG00000005248	prdm5	59	45.238	ENSPMAG00000000839	-	99	45.238
ENSPMAG00000005248	prdm5	73	34.951	ENSPMAG00000004866	-	75	32.990
ENSPMAG00000005248	prdm5	92	45.361	ENSPMAG00000008196	-	100	45.361
ENSPMAG00000005248	prdm5	94	41.379	ENSPMAG00000005692	-	100	41.379
ENSPMAG00000005248	prdm5	99	43.478	ENSPMAG00000006708	-	99	43.478
ENSPMAG00000005248	prdm5	99	36.842	ENSPMAG00000004189	-	99	35.294
ENSPMAG00000005248	prdm5	80	46.739	ENSPMAG00000008950	wt1a	61	46.739
ENSPMAG00000005248	prdm5	92	37.218	ENSPMAG00000007500	ZNF436	100	46.739
ENSPMAG00000005248	prdm5	92	38.462	ENSPMAG00000002022	-	100	38.462
ENSPMAG00000005248	prdm5	82	35.268	ENSPMAG00000004344	-	93	35.268
ENSPMAG00000005248	prdm5	99	34.470	ENSPMAG00000006198	ZBTB47	68	34.470
ENSPMAG00000005248	prdm5	99	35.238	ENSPMAG00000000706	-	100	46.032
ENSPMAG00000005248	prdm5	99	30.978	ENSPMAG00000007983	-	98	30.978
ENSPMAG00000005248	prdm5	91	39.683	ENSPMAG00000008691	-	99	39.683
ENSPMAG00000005248	prdm5	92	43.434	ENSPMAG00000008879	-	100	43.434
ENSPMAG00000005248	prdm5	100	34.826	ENSPMAG00000007731	-	91	34.826
ENSPMAG00000005248	prdm5	100	42.202	ENSPMAG00000004710	znf236	61	50.794
ENSPMAG00000005248	prdm5	100	35.433	ENSPMAG00000001294	-	100	35.433
ENSPMAG00000005248	prdm5	99	53.191	ENSPMAG00000007084	-	100	53.191
ENSPMAG00000005248	prdm5	100	38.235	ENSPMAG00000000404	-	98	38.235
ENSPMAG00000005248	prdm5	100	40.764	ENSPMAG00000000401	-	97	40.764
ENSPMAG00000005248	prdm5	100	30.357	ENSPMAG00000006066	znf366	99	30.357
ENSPMAG00000005248	prdm5	99	34.259	ENSPMAG00000009794	PRDM15	58	34.259
ENSPMAG00000005248	prdm5	99	34.483	ENSPMAG00000007492	-	90	34.483

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000005248	prdm5	100	72.573	ENSG00000138738	PRDM5	83	66.393	Homo_sapiens
ENSPMAG00000005248	prdm5	100	68.765	ENSAPOG00000023220	prdm5	73	67.797	Acanthochromis_polyacanthus
ENSPMAG00000005248	prdm5	99	67.929	ENSAMEG00000003050	PRDM5	82	68.687	Ailuropoda_melanoleuca
ENSPMAG00000005248	prdm5	100	69.976	ENSACIG00000000406	prdm5	75	69.007	Amphilophus_citrinellus
ENSPMAG00000005248	prdm5	100	70.460	ENSAOCG00000014806	prdm5	73	69.492	Amphiprion_ocellaris
ENSPMAG00000005248	prdm5	100	61.628	ENSAPEG00000016846	prdm5	75	60.698	Amphiprion_percula
ENSPMAG00000005248	prdm5	100	73.366	ENSATEG00000013829	prdm5	75	72.397	Anabas_testudineus
ENSPMAG00000005248	prdm5	100	76.699	ENSAPLG00000013828	PRDM5	77	75.728	Anas_platyrhynchos
ENSPMAG00000005248	prdm5	100	76.942	ENSACAG00000012999	PRDM5	73	75.728	Anolis_carolinensis
ENSPMAG00000005248	prdm5	100	91.753	ENSANAG00000027411	PRDM5	67	91.753	Aotus_nancymaae
ENSPMAG00000005248	prdm5	100	69.976	ENSACLG00000017996	prdm5	73	69.007	Astatotilapia_calliptera
ENSPMAG00000005248	prdm5	100	74.576	ENSAMXG00000041864	prdm5	90	73.608	Astyanax_mexicanus
ENSPMAG00000005248	prdm5	100	71.359	ENSBTAG00000012111	PRDM5	73	71.359	Bos_taurus
ENSPMAG00000005248	prdm5	100	91.753	ENSCJAG00000003133	PRDM5	67	91.753	Callithrix_jacchus
ENSPMAG00000005248	prdm5	100	67.233	ENSCAFG00000004179	PRDM5	80	67.233	Canis_familiaris
ENSPMAG00000005248	prdm5	100	71.845	ENSCAFG00020017685	PRDM5	73	71.845	Canis_lupus_dingo
ENSPMAG00000005248	prdm5	100	71.359	ENSCHIG00000018772	PRDM5	75	71.359	Capra_hircus
ENSPMAG00000005248	prdm5	100	72.019	ENSTSYG00000009630	PRDM5	71	72.019	Carlito_syrichta
ENSPMAG00000005248	prdm5	100	90.722	ENSCAPG00000015217	PRDM5	78	90.722	Cavia_aperea
ENSPMAG00000005248	prdm5	100	90.722	ENSCPOG00000012883	PRDM5	78	90.722	Cavia_porcellus
ENSPMAG00000005248	prdm5	100	91.753	ENSCCAG00000023157	PRDM5	84	79.365	Cebus_capucinus
ENSPMAG00000005248	prdm5	100	91.753	ENSCATG00000042510	PRDM5	67	91.753	Cercocebus_atys
ENSPMAG00000005248	prdm5	100	90.722	ENSCLAG00000005392	PRDM5	78	90.722	Chinchilla_lanigera
ENSPMAG00000005248	prdm5	100	68.689	ENSCSAG00000003729	PRDM5	71	68.689	Chlorocebus_sabaeus
ENSPMAG00000005248	prdm5	100	69.528	ENSCHOG00000007801	PRDM5	62	69.528	Choloepus_hoffmanni
ENSPMAG00000005248	prdm5	100	76.942	ENSCPBG00000024735	PRDM5	72	75.971	Chrysemys_picta_bellii
ENSPMAG00000005248	prdm5	100	91.753	ENSCANG00000036807	PRDM5	86	79.101	Colobus_angolensis_palliatus
ENSPMAG00000005248	prdm5	100	91.753	ENSCGRG00001010581	Prdm5	71	91.753	Cricetulus_griseus_chok1gshd
ENSPMAG00000005248	prdm5	100	55.527	ENSCGRG00000010996	-	74	57.282	Cricetulus_griseus_crigri
ENSPMAG00000005248	prdm5	100	69.734	ENSCSEG00000019979	prdm5	73	68.765	Cynoglossus_semilaevis
ENSPMAG00000005248	prdm5	100	70.297	ENSCVAG00000013692	prdm5	74	70.297	Cyprinodon_variegatus
ENSPMAG00000005248	prdm5	100	71.913	ENSDARG00000006288	prdm5	80	70.944	Danio_rerio
ENSPMAG00000005248	prdm5	100	71.186	ENSDNOG00000002009	PRDM5	83	71.186	Dasypus_novemcinctus
ENSPMAG00000005248	prdm5	100	76.806	ENSDORG00000007739	Prdm5	75	72.624	Dipodomys_ordii
ENSPMAG00000005248	prdm5	100	58.172	ENSETEG00000020268	PRDM5	69	58.172	Echinops_telfairi
ENSPMAG00000005248	prdm5	100	70.000	ENSEBUG00000004301	prdm5	73	70.000	Eptatretus_burgeri
ENSPMAG00000005248	prdm5	100	91.753	ENSEASG00005018365	PRDM5	77	91.753	Equus_asinus_asinus
ENSPMAG00000005248	prdm5	100	61.741	ENSECAG00000011516	PRDM5	62	69.921	Equus_caballus
ENSPMAG00000005248	prdm5	98	57.634	ENSECAG00000024747	-	74	69.748	Equus_caballus
ENSPMAG00000005248	prdm5	99	66.423	ENSEEUG00000010306	PRDM5	71	66.423	Erinaceus_europaeus
ENSPMAG00000005248	prdm5	100	62.234	ENSELUG00000005894	prdm5	67	70.027	Esox_lucius
ENSPMAG00000005248	prdm5	100	71.602	ENSFCAG00000025656	PRDM5	73	71.602	Felis_catus
ENSPMAG00000005248	prdm5	100	90.722	ENSFDAG00000021361	PRDM5	67	90.722	Fukomys_damarensis
ENSPMAG00000005248	prdm5	100	69.976	ENSFHEG00000013040	prdm5	73	69.007	Fundulus_heteroclitus
ENSPMAG00000005248	prdm5	99	58.824	ENSGMOG00000012038	prdm5	100	58.358	Gadus_morhua
ENSPMAG00000005248	prdm5	100	76.456	ENSGALG00000011963	PRDM5	73	75.485	Gallus_gallus
ENSPMAG00000005248	prdm5	100	62.588	ENSGAFG00000019233	prdm5	68	69.761	Gambusia_affinis
ENSPMAG00000005248	prdm5	100	72.911	ENSGAGG00000020362	PRDM5	71	68.905	Gopherus_agassizii
ENSPMAG00000005248	prdm5	100	91.753	ENSGGOG00000013562	PRDM5	67	91.753	Gorilla_gorilla
ENSPMAG00000005248	prdm5	100	69.976	ENSHBUG00000023375	prdm5	74	69.007	Haplochromis_burtoni
ENSPMAG00000005248	prdm5	99	68.571	ENSHGLG00000003010	PRDM5	73	67.181	Heterocephalus_glaber_female
ENSPMAG00000005248	prdm5	100	90.722	ENSHGLG00100003696	PRDM5	67	90.722	Heterocephalus_glaber_male
ENSPMAG00000005248	prdm5	100	72.881	ENSHCOG00000012131	prdm5	74	71.913	Hippocampus_comes
ENSPMAG00000005248	prdm5	100	73.850	ENSIPUG00000001248	prdm5	73	72.881	Ictalurus_punctatus
ENSPMAG00000005248	prdm5	100	90.722	ENSSTOG00000004741	PRDM5	78	90.722	Ictidomys_tridecemlineatus
ENSPMAG00000005248	prdm5	100	90.722	ENSJJAG00000011464	Prdm5	78	90.722	Jaculus_jaculus
ENSPMAG00000005248	prdm5	100	69.976	ENSKMAG00000013663	prdm5	73	69.007	Kryptolebias_marmoratus
ENSPMAG00000005248	prdm5	100	73.123	ENSLBEG00000022736	prdm5	74	72.155	Labrus_bergylta
ENSPMAG00000005248	prdm5	100	76.456	ENSLACG00000009187	PRDM5	80	75.485	Latimeria_chalumnae
ENSPMAG00000005248	prdm5	100	74.272	ENSLOCG00000009778	prdm5	75	73.301	Lepisosteus_oculatus
ENSPMAG00000005248	prdm5	100	70.342	ENSLAFG00000006532	PRDM5	99	66.160	Loxodonta_africana
ENSPMAG00000005248	prdm5	100	91.753	ENSMFAG00000045845	PRDM5	85	79.101	Macaca_fascicularis
ENSPMAG00000005248	prdm5	100	91.753	ENSMMUG00000003249	PRDM5	85	78.836	Macaca_mulatta
ENSPMAG00000005248	prdm5	100	91.753	ENSMNEG00000019018	PRDM5	85	79.101	Macaca_nemestrina
ENSPMAG00000005248	prdm5	100	72.573	ENSMLEG00000023145	PRDM5	78	72.573	Mandrillus_leucophaeus
ENSPMAG00000005248	prdm5	100	71.186	ENSMAMG00000013419	prdm5	74	70.702	Mastacembelus_armatus
ENSPMAG00000005248	prdm5	100	69.976	ENSMZEG00005020645	prdm5	74	69.007	Maylandia_zebra
ENSPMAG00000005248	prdm5	100	76.456	ENSMGAG00000010710	PRDM5	77	75.485	Meleagris_gallopavo
ENSPMAG00000005248	prdm5	100	91.753	ENSMAUG00000006768	Prdm5	71	91.753	Mesocricetus_auratus
ENSPMAG00000005248	prdm5	100	90.722	ENSMICG00000001459	PRDM5	67	90.722	Microcebus_murinus
ENSPMAG00000005248	prdm5	100	91.753	ENSMOCG00000016267	Prdm5	71	91.753	Microtus_ochrogaster
ENSPMAG00000005248	prdm5	100	70.218	ENSMMOG00000006035	prdm5	73	69.249	Mola_mola
ENSPMAG00000005248	prdm5	100	73.544	ENSMODG00000018942	PRDM5	74	72.330	Monodelphis_domestica
ENSPMAG00000005248	prdm5	100	66.344	ENSMALG00000013934	prdm5	73	63.882	Monopterus_albus
ENSPMAG00000005248	prdm5	100	91.753	MGP_CAROLIEiJ_G0028463	Prdm5	71	91.753	Mus_caroli
ENSPMAG00000005248	prdm5	100	91.753	ENSMUSG00000029913	Prdm5	71	91.753	Mus_musculus
ENSPMAG00000005248	prdm5	100	91.753	MGP_PahariEiJ_G0022203	Prdm5	71	91.753	Mus_pahari
ENSPMAG00000005248	prdm5	100	91.753	MGP_SPRETEiJ_G0029467	Prdm5	71	91.753	Mus_spretus
ENSPMAG00000005248	prdm5	100	71.359	ENSMPUG00000017415	PRDM5	73	71.359	Mustela_putorius_furo
ENSPMAG00000005248	prdm5	100	64.904	ENSMLUG00000006097	PRDM5	79	64.904	Myotis_lucifugus
ENSPMAG00000005248	prdm5	100	91.753	ENSNGAG00000018317	Prdm5	71	91.753	Nannospalax_galili
ENSPMAG00000005248	prdm5	99	61.483	ENSNBRG00000004976	prdm5	72	63.196	Neolamprologus_brichardi
ENSPMAG00000005248	prdm5	100	91.753	ENSNLEG00000009107	PRDM5	84	79.101	Nomascus_leucogenys
ENSPMAG00000005248	prdm5	98	75.172	ENSMEUG00000006576	-	61	68.966	Notamacropus_eugenii
ENSPMAG00000005248	prdm5	99	66.554	ENSOPRG00000011066	-	50	66.554	Ochotona_princeps
ENSPMAG00000005248	prdm5	100	90.722	ENSODEG00000009133	PRDM5	68	90.722	Octodon_degus
ENSPMAG00000005248	prdm5	100	72.639	ENSONIG00000003111	prdm5	76	71.671	Oreochromis_niloticus
ENSPMAG00000005248	prdm5	90	97.297	ENSOANG00000006197	-	99	97.297	Ornithorhynchus_anatinus
ENSPMAG00000005248	prdm5	100	66.379	ENSOANG00000015109	PRDM5	63	65.230	Ornithorhynchus_anatinus
ENSPMAG00000005248	prdm5	99	66.830	ENSOCUG00000013454	PRDM5	77	66.830	Oryctolagus_cuniculus
ENSPMAG00000005248	prdm5	100	70.218	ENSORLG00000016247	prdm5	73	69.249	Oryzias_latipes
ENSPMAG00000005248	prdm5	100	70.218	ENSORLG00020018051	prdm5	73	69.249	Oryzias_latipes_hni
ENSPMAG00000005248	prdm5	100	70.218	ENSORLG00015013760	prdm5	73	69.249	Oryzias_latipes_hsok
ENSPMAG00000005248	prdm5	100	69.324	ENSOMEG00000005143	prdm5	73	68.357	Oryzias_melastigma
ENSPMAG00000005248	prdm5	100	78.249	ENSOGAG00000009996	PRDM5	83	78.249	Otolemur_garnettii
ENSPMAG00000005248	prdm5	100	71.602	ENSOARG00000015473	PRDM5	76	68.012	Ovis_aries
ENSPMAG00000005248	prdm5	100	79.101	ENSPPAG00000043045	PRDM5	85	79.101	Pan_paniscus
ENSPMAG00000005248	prdm5	100	71.602	ENSPPRG00000001020	PRDM5	73	71.602	Panthera_pardus
ENSPMAG00000005248	prdm5	100	71.845	ENSPTIG00000010807	PRDM5	73	71.845	Panthera_tigris_altaica
ENSPMAG00000005248	prdm5	100	91.753	ENSPTRG00000016403	PRDM5	67	91.753	Pan_troglodytes
ENSPMAG00000005248	prdm5	100	91.753	ENSPANG00000023612	PRDM5	67	91.753	Papio_anubis
ENSPMAG00000005248	prdm5	100	45.074	ENSPKIG00000015492	prdm5	73	53.403	Paramormyrops_kingsleyae
ENSPMAG00000005248	prdm5	100	76.699	ENSPSIG00000013505	PRDM5	73	75.728	Pelodiscus_sinensis
ENSPMAG00000005248	prdm5	100	66.102	ENSPMGG00000012622	prdm5	73	65.012	Periophthalmus_magnuspinnatus
ENSPMAG00000005248	prdm5	100	64.583	ENSPFOG00000018630	prdm5	67	64.583	Poecilia_formosa
ENSPMAG00000005248	prdm5	100	71.913	ENSPLAG00000014148	prdm5	74	70.944	Poecilia_latipinna
ENSPMAG00000005248	prdm5	100	70.218	ENSPMEG00000018002	prdm5	73	69.249	Poecilia_mexicana
ENSPMAG00000005248	prdm5	100	70.218	ENSPREG00000018366	prdm5	73	69.249	Poecilia_reticulata
ENSPMAG00000005248	prdm5	100	72.573	ENSPPYG00000015031	PRDM5	74	72.573	Pongo_abelii
ENSPMAG00000005248	prdm5	100	65.291	ENSPCAG00000011671	PRDM5	77	65.291	Procavia_capensis
ENSPMAG00000005248	prdm5	100	90.722	ENSPCOG00000022828	PRDM5	67	90.722	Propithecus_coquereli
ENSPMAG00000005248	prdm5	100	68.599	ENSPVAG00000012309	PRDM5	77	68.599	Pteropus_vampyrus
ENSPMAG00000005248	prdm5	100	69.734	ENSPNYG00000012194	prdm5	73	68.765	Pundamilia_nyererei
ENSPMAG00000005248	prdm5	100	71.186	ENSPNAG00000026181	prdm5	73	70.218	Pygocentrus_nattereri
ENSPMAG00000005248	prdm5	100	70.944	ENSPNAG00000023191	-	78	69.976	Pygocentrus_nattereri
ENSPMAG00000005248	prdm5	100	66.910	ENSRNOG00000023679	Prdm5	71	66.910	Rattus_norvegicus
ENSPMAG00000005248	prdm5	100	91.753	ENSRBIG00000041307	PRDM5	67	91.753	Rhinopithecus_bieti
ENSPMAG00000005248	prdm5	100	74.536	ENSRROG00000035343	PRDM5	85	73.475	Rhinopithecus_roxellana
ENSPMAG00000005248	prdm5	100	91.753	ENSSBOG00000022100	PRDM5	84	79.365	Saimiri_boliviensis_boliviensis
ENSPMAG00000005248	prdm5	100	66.755	ENSSHAG00000003250	PRDM5	77	70.745	Sarcophilus_harrisii
ENSPMAG00000005248	prdm5	100	69.976	ENSSFOG00015020478	prdm5	74	68.841	Scleropages_formosus
ENSPMAG00000005248	prdm5	100	73.850	ENSSMAG00000018844	prdm5	76	72.881	Scophthalmus_maximus
ENSPMAG00000005248	prdm5	100	70.460	ENSSDUG00000020397	prdm5	73	69.492	Seriola_dumerili
ENSPMAG00000005248	prdm5	100	73.366	ENSSLDG00000013353	prdm5	73	69.492	Seriola_lalandi_dorsalis
ENSPMAG00000005248	prdm5	100	94.845	ENSSPUG00000009941	PRDM5	77	94.845	Sphenodon_punctatus
ENSPMAG00000005248	prdm5	100	73.123	ENSSPAG00000013866	prdm5	75	72.155	Stegastes_partitus
ENSPMAG00000005248	prdm5	100	72.330	ENSSSCG00000009101	PRDM5	77	68.932	Sus_scrofa
ENSPMAG00000005248	prdm5	100	75.728	ENSTGUG00000001920	PRDM5	77	74.757	Taeniopygia_guttata
ENSPMAG00000005248	prdm5	100	70.218	ENSTRUG00000013850	prdm5	73	69.249	Takifugu_rubripes
ENSPMAG00000005248	prdm5	100	54.831	ENSTNIG00000005901	prdm5	73	53.865	Tetraodon_nigroviridis
ENSPMAG00000005248	prdm5	100	69.264	ENSTBEG00000015386	PRDM5	63	69.264	Tupaia_belangeri
ENSPMAG00000005248	prdm5	100	71.845	ENSTTRG00000010996	PRDM5	73	71.845	Tursiops_truncatus
ENSPMAG00000005248	prdm5	100	65.013	ENSUAMG00000009994	PRDM5	59	73.932	Ursus_americanus
ENSPMAG00000005248	prdm5	100	78.042	ENSUMAG00000003733	PRDM5	85	78.042	Ursus_maritimus
ENSPMAG00000005248	prdm5	100	67.883	ENSVPAG00000007435	PRDM5	76	67.883	Vicugna_pacos
ENSPMAG00000005248	prdm5	100	71.845	ENSVVUG00000013192	PRDM5	79	71.845	Vulpes_vulpes
ENSPMAG00000005248	prdm5	100	72.087	ENSXETG00000002101	prdm5	73	71.117	Xenopus_tropicalis
ENSPMAG00000005248	prdm5	100	70.460	ENSXCOG00000008567	prdm5	73	69.492	Xiphophorus_couchianus
ENSPMAG00000005248	prdm5	100	70.460	ENSXMAG00000013825	prdm5	73	69.492	Xiphophorus_maculatus