EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000005461 (Gene tree)
Gene ID: -
Gene Symbol: lsm12a
Alias: -
Full Name: LSM12 homolog a
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 10065 bases
Position: chrGL483614:48-10112
Accession: ZDB-GENE-040516-12
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000006020	AD	PF09793.9	3.2e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000006048	-	522	-	ENSPMAP00000006020	174 (aa)	-	S4RLD4

Gene Model

Click here to download ENSPMAG00000005461's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000005461's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000005461	lsm12a	99	66.279	ENSG00000161654	LSM12	88	66.279	Homo_sapiens
ENSPMAG00000005461	lsm12a	99	68.571	ENSAPOG00000007907	lsm12b	89	68.571	Acanthochromis_polyacanthus
ENSPMAG00000005461	lsm12a	99	64.571	ENSAMEG00000018321	LSM12	88	64.571	Ailuropoda_melanoleuca
ENSPMAG00000005461	lsm12a	99	68.571	ENSACIG00000008538	lsm12b	89	68.571	Amphilophus_citrinellus
ENSPMAG00000005461	lsm12a	99	68.000	ENSAOCG00000021847	lsm12b	78	68.000	Amphiprion_ocellaris
ENSPMAG00000005461	lsm12a	99	68.000	ENSAPEG00000002252	lsm12b	89	68.000	Amphiprion_percula
ENSPMAG00000005461	lsm12a	99	66.286	ENSATEG00000005705	lsm12b	89	66.286	Anabas_testudineus
ENSPMAG00000005461	lsm12a	99	65.896	ENSACAG00000004618	LSM12	89	65.896	Anolis_carolinensis
ENSPMAG00000005461	lsm12a	99	66.279	ENSANAG00000029011	LSM12	88	66.279	Aotus_nancymaae
ENSPMAG00000005461	lsm12a	99	68.571	ENSACLG00000026332	lsm12b	89	68.571	Astatotilapia_calliptera
ENSPMAG00000005461	lsm12a	99	64.000	ENSAMXG00000036117	lsm12a	81	64.000	Astyanax_mexicanus
ENSPMAG00000005461	lsm12a	99	68.000	ENSAMXG00000032952	lsm12b	89	68.000	Astyanax_mexicanus
ENSPMAG00000005461	lsm12a	99	66.279	ENSBTAG00000016252	LSM12	88	66.279	Bos_taurus
ENSPMAG00000005461	lsm12a	99	66.279	ENSCJAG00000048480	LSM12	88	66.279	Callithrix_jacchus
ENSPMAG00000005461	lsm12a	99	66.279	ENSCAFG00000014379	LSM12	81	66.279	Canis_familiaris
ENSPMAG00000005461	lsm12a	99	66.279	ENSCAFG00020012173	LSM12	88	66.279	Canis_lupus_dingo
ENSPMAG00000005461	lsm12a	99	66.279	ENSCHIG00000018175	LSM12	88	66.279	Capra_hircus
ENSPMAG00000005461	lsm12a	99	66.279	ENSTSYG00000036361	LSM12	88	66.279	Carlito_syrichta
ENSPMAG00000005461	lsm12a	81	62.411	ENSCAPG00000009647	LSM12	77	62.411	Cavia_aperea
ENSPMAG00000005461	lsm12a	99	65.116	ENSCPOG00000012860	LSM12	88	65.116	Cavia_porcellus
ENSPMAG00000005461	lsm12a	99	66.279	ENSCCAG00000032905	LSM12	88	66.279	Cebus_capucinus
ENSPMAG00000005461	lsm12a	99	66.279	ENSCATG00000030577	-	88	66.279	Cercocebus_atys
ENSPMAG00000005461	lsm12a	99	65.698	ENSCLAG00000015759	LSM12	88	65.698	Chinchilla_lanigera
ENSPMAG00000005461	lsm12a	99	66.279	ENSCSAG00000003486	LSM12	88	66.279	Chlorocebus_sabaeus
ENSPMAG00000005461	lsm12a	51	70.455	ENSCHOG00000001198	LSM12	81	70.455	Choloepus_hoffmanni
ENSPMAG00000005461	lsm12a	99	66.474	ENSCPBG00000027105	LSM12	89	66.474	Chrysemys_picta_bellii
ENSPMAG00000005461	lsm12a	99	66.279	ENSCANG00000043328	LSM12	88	66.279	Colobus_angolensis_palliatus
ENSPMAG00000005461	lsm12a	99	66.279	ENSCGRG00001002094	Lsm12	88	66.279	Cricetulus_griseus_chok1gshd
ENSPMAG00000005461	lsm12a	88	59.477	ENSCGRG00000004316	Lsm12	86	59.477	Cricetulus_griseus_crigri
ENSPMAG00000005461	lsm12a	99	66.857	ENSCSEG00000008434	lsm12b	89	66.857	Cynoglossus_semilaevis
ENSPMAG00000005461	lsm12a	99	68.000	ENSCVAG00000008755	lsm12b	89	68.000	Cyprinodon_variegatus
ENSPMAG00000005461	lsm12a	99	68.571	ENSDARG00000109510	lsm12b	89	68.571	Danio_rerio
ENSPMAG00000005461	lsm12a	99	68.571	ENSDARG00000028848	lsm12a	89	68.571	Danio_rerio
ENSPMAG00000005461	lsm12a	99	66.279	ENSDNOG00000002418	LSM12	80	66.279	Dasypus_novemcinctus
ENSPMAG00000005461	lsm12a	99	66.279	ENSDORG00000016381	Lsm12	88	66.279	Dipodomys_ordii
ENSPMAG00000005461	lsm12a	94	35.714	FBgn0030364	Lsm12	79	36.047	Drosophila_melanogaster
ENSPMAG00000005461	lsm12a	83	34.194	FBgn0036057	CG14164	83	34.194	Drosophila_melanogaster
ENSPMAG00000005461	lsm12a	99	66.860	ENSETEG00000008374	LSM12	88	66.860	Echinops_telfairi
ENSPMAG00000005461	lsm12a	87	60.526	ENSETEG00000011012	-	87	60.526	Echinops_telfairi
ENSPMAG00000005461	lsm12a	95	72.121	ENSEBUG00000016299	lsm12a	92	72.121	Eptatretus_burgeri
ENSPMAG00000005461	lsm12a	99	66.279	ENSEASG00005010155	LSM12	88	66.279	Equus_asinus_asinus
ENSPMAG00000005461	lsm12a	99	66.279	ENSECAG00000009071	LSM12	88	66.279	Equus_caballus
ENSPMAG00000005461	lsm12a	76	65.909	ENSEEUG00000002419	-	86	65.909	Erinaceus_europaeus
ENSPMAG00000005461	lsm12a	99	67.429	ENSELUG00000000256	-	89	67.429	Esox_lucius
ENSPMAG00000005461	lsm12a	99	66.857	ENSELUG00000015538	lsm12b	89	63.429	Esox_lucius
ENSPMAG00000005461	lsm12a	99	66.279	ENSFCAG00000037021	LSM12	88	66.279	Felis_catus
ENSPMAG00000005461	lsm12a	73	64.567	ENSFDAG00000008954	LSM12	74	64.567	Fukomys_damarensis
ENSPMAG00000005461	lsm12a	99	66.857	ENSFHEG00000019913	lsm12b	89	66.857	Fundulus_heteroclitus
ENSPMAG00000005461	lsm12a	79	67.153	ENSGMOG00000015449	lsm12b	87	67.153	Gadus_morhua
ENSPMAG00000005461	lsm12a	76	65.152	ENSGALG00000039803	LSM12	86	65.152	Gallus_gallus
ENSPMAG00000005461	lsm12a	99	67.429	ENSGAFG00000011829	lsm12b	89	67.429	Gambusia_affinis
ENSPMAG00000005461	lsm12a	79	68.613	ENSGACG00000003428	lsm12b	87	68.613	Gasterosteus_aculeatus
ENSPMAG00000005461	lsm12a	99	66.474	ENSGAGG00000021965	LSM12	89	66.474	Gopherus_agassizii
ENSPMAG00000005461	lsm12a	99	66.279	ENSGGOG00000010589	-	88	66.279	Gorilla_gorilla
ENSPMAG00000005461	lsm12a	95	68.263	ENSHBUG00000007667	lsm12b	74	68.263	Haplochromis_burtoni
ENSPMAG00000005461	lsm12a	99	66.279	ENSHGLG00000011411	LSM12	88	66.279	Heterocephalus_glaber_female
ENSPMAG00000005461	lsm12a	76	65.414	ENSHGLG00100000241	LSM12	71	65.414	Heterocephalus_glaber_male
ENSPMAG00000005461	lsm12a	99	68.000	ENSHCOG00000002094	lsm12b	89	68.000	Hippocampus_comes
ENSPMAG00000005461	lsm12a	99	65.143	ENSIPUG00000014800	lsm12	89	65.143	Ictalurus_punctatus
ENSPMAG00000005461	lsm12a	100	65.341	ENSIPUG00000008936	lsm12a	90	65.341	Ictalurus_punctatus
ENSPMAG00000005461	lsm12a	99	66.279	ENSSTOG00000007403	LSM12	88	66.279	Ictidomys_tridecemlineatus
ENSPMAG00000005461	lsm12a	97	60.355	ENSJJAG00000011793	-	89	60.355	Jaculus_jaculus
ENSPMAG00000005461	lsm12a	99	66.279	ENSJJAG00000004364	-	88	66.279	Jaculus_jaculus
ENSPMAG00000005461	lsm12a	90	54.088	ENSJJAG00000014652	-	95	54.088	Jaculus_jaculus
ENSPMAG00000005461	lsm12a	95	67.066	ENSKMAG00000007704	lsm12b	56	67.066	Kryptolebias_marmoratus
ENSPMAG00000005461	lsm12a	99	68.000	ENSLBEG00000027999	lsm12b	89	68.000	Labrus_bergylta
ENSPMAG00000005461	lsm12a	99	68.786	ENSLACG00000015981	LSM12	89	68.786	Latimeria_chalumnae
ENSPMAG00000005461	lsm12a	99	68.571	ENSLOCG00000013079	lsm12b	89	68.571	Lepisosteus_oculatus
ENSPMAG00000005461	lsm12a	99	66.279	ENSLAFG00000005202	LSM12	88	66.279	Loxodonta_africana
ENSPMAG00000005461	lsm12a	99	66.279	ENSMFAG00000031376	LSM12	88	66.279	Macaca_fascicularis
ENSPMAG00000005461	lsm12a	99	66.279	ENSMMUG00000006804	LSM12	88	66.279	Macaca_mulatta
ENSPMAG00000005461	lsm12a	99	66.279	ENSMNEG00000030594	-	88	66.279	Macaca_nemestrina
ENSPMAG00000005461	lsm12a	99	66.279	ENSMLEG00000039934	LSM12	88	66.279	Mandrillus_leucophaeus
ENSPMAG00000005461	lsm12a	99	68.000	ENSMAMG00000004279	lsm12b	89	68.000	Mastacembelus_armatus
ENSPMAG00000005461	lsm12a	99	68.571	ENSMZEG00005005754	lsm12b	89	68.571	Maylandia_zebra
ENSPMAG00000005461	lsm12a	99	66.279	ENSMICG00000037219	LSM12	88	66.279	Microcebus_murinus
ENSPMAG00000005461	lsm12a	99	66.279	ENSMOCG00000019878	-	88	66.279	Microtus_ochrogaster
ENSPMAG00000005461	lsm12a	99	55.814	ENSMOCG00000017015	-	75	55.814	Microtus_ochrogaster
ENSPMAG00000005461	lsm12a	99	67.429	ENSMMOG00000020848	lsm12b	89	67.429	Mola_mola
ENSPMAG00000005461	lsm12a	98	67.836	ENSMALG00000007578	lsm12b	87	67.836	Monopterus_albus
ENSPMAG00000005461	lsm12a	99	66.279	MGP_CAROLIEiJ_G0017241	Lsm12	88	66.279	Mus_caroli
ENSPMAG00000005461	lsm12a	99	66.279	ENSMUSG00000020922	Lsm12	88	66.279	Mus_musculus
ENSPMAG00000005461	lsm12a	99	60.317	MGP_PahariEiJ_G0018371	Lsm12	89	60.317	Mus_pahari
ENSPMAG00000005461	lsm12a	99	65.698	MGP_SPRETEiJ_G0018084	Lsm12	88	65.698	Mus_spretus
ENSPMAG00000005461	lsm12a	99	66.860	ENSMLUG00000006391	LSM12	88	66.860	Myotis_lucifugus
ENSPMAG00000005461	lsm12a	99	66.279	ENSNGAG00000001870	Lsm12	88	66.279	Nannospalax_galili
ENSPMAG00000005461	lsm12a	93	50.888	ENSNGAG00000015429	-	88	50.888	Nannospalax_galili
ENSPMAG00000005461	lsm12a	99	68.571	ENSNBRG00000006266	lsm12b	89	68.571	Neolamprologus_brichardi
ENSPMAG00000005461	lsm12a	99	66.279	ENSNLEG00000005580	-	88	66.279	Nomascus_leucogenys
ENSPMAG00000005461	lsm12a	94	65.031	ENSMEUG00000007501	-	99	65.031	Notamacropus_eugenii
ENSPMAG00000005461	lsm12a	99	66.279	ENSOPRG00000008552	LSM12	88	66.279	Ochotona_princeps
ENSPMAG00000005461	lsm12a	99	66.667	ENSODEG00000017998	-	89	66.667	Octodon_degus
ENSPMAG00000005461	lsm12a	99	60.345	ENSODEG00000007886	-	66	60.345	Octodon_degus
ENSPMAG00000005461	lsm12a	99	68.571	ENSONIG00000007933	lsm12b	89	68.571	Oreochromis_niloticus
ENSPMAG00000005461	lsm12a	99	64.571	ENSOCUG00000008566	-	88	64.571	Oryctolagus_cuniculus
ENSPMAG00000005461	lsm12a	99	64.368	ENSOCUG00000027889	-	90	64.368	Oryctolagus_cuniculus
ENSPMAG00000005461	lsm12a	99	63.218	ENSOCUG00000021254	-	90	63.218	Oryctolagus_cuniculus
ENSPMAG00000005461	lsm12a	99	62.644	ENSOCUG00000024823	-	90	62.644	Oryctolagus_cuniculus
ENSPMAG00000005461	lsm12a	99	67.429	ENSORLG00000011310	lsm12b	89	67.429	Oryzias_latipes
ENSPMAG00000005461	lsm12a	99	67.429	ENSORLG00020002060	lsm12b	82	67.429	Oryzias_latipes_hni
ENSPMAG00000005461	lsm12a	99	67.429	ENSORLG00015001647	lsm12b	82	67.429	Oryzias_latipes_hsok
ENSPMAG00000005461	lsm12a	99	67.429	ENSOMEG00000006184	lsm12b	82	67.429	Oryzias_melastigma
ENSPMAG00000005461	lsm12a	99	66.279	ENSOGAG00000010489	LSM12	88	66.279	Otolemur_garnettii
ENSPMAG00000005461	lsm12a	99	63.483	ENSOARG00000006589	LSM12	89	63.483	Ovis_aries
ENSPMAG00000005461	lsm12a	99	58.140	ENSPPAG00000034974	-	88	58.140	Pan_paniscus
ENSPMAG00000005461	lsm12a	99	66.279	ENSPPRG00000023420	LSM12	88	66.279	Panthera_pardus
ENSPMAG00000005461	lsm12a	76	65.909	ENSPTIG00000012704	-	71	65.909	Panthera_tigris_altaica
ENSPMAG00000005461	lsm12a	51	69.663	ENSPTIG00000014850	-	65	69.663	Panthera_tigris_altaica
ENSPMAG00000005461	lsm12a	99	66.279	ENSPTRG00000009261	LSM12	88	66.279	Pan_troglodytes
ENSPMAG00000005461	lsm12a	99	66.279	ENSPANG00000021315	-	88	66.279	Papio_anubis
ENSPMAG00000005461	lsm12a	98	67.251	ENSPKIG00000017932	-	87	67.251	Paramormyrops_kingsleyae
ENSPMAG00000005461	lsm12a	99	68.000	ENSPKIG00000021058	lsm12b	91	67.470	Paramormyrops_kingsleyae
ENSPMAG00000005461	lsm12a	99	67.429	ENSPMGG00000021344	lsm12b	89	67.429	Periophthalmus_magnuspinnatus
ENSPMAG00000005461	lsm12a	99	66.279	ENSPEMG00000012199	Lsm12	88	66.279	Peromyscus_maniculatus_bairdii
ENSPMAG00000005461	lsm12a	99	65.698	ENSPCIG00000020244	LSM12	88	65.698	Phascolarctos_cinereus
ENSPMAG00000005461	lsm12a	99	68.000	ENSPFOG00000015930	lsm12b	89	68.000	Poecilia_formosa
ENSPMAG00000005461	lsm12a	99	68.000	ENSPLAG00000021089	lsm12b	89	68.000	Poecilia_latipinna
ENSPMAG00000005461	lsm12a	99	68.000	ENSPMEG00000012961	lsm12b	89	68.000	Poecilia_mexicana
ENSPMAG00000005461	lsm12a	86	67.333	ENSPREG00000010236	lsm12b	83	67.333	Poecilia_reticulata
ENSPMAG00000005461	lsm12a	99	66.279	ENSPPYG00000008344	LSM12	88	66.279	Pongo_abelii
ENSPMAG00000005461	lsm12a	91	65.409	ENSPCAG00000008790	LSM12	100	65.409	Procavia_capensis
ENSPMAG00000005461	lsm12a	99	66.279	ENSPCOG00000027951	LSM12	88	66.279	Propithecus_coquereli
ENSPMAG00000005461	lsm12a	99	65.698	ENSPVAG00000013706	LSM12	88	65.698	Pteropus_vampyrus
ENSPMAG00000005461	lsm12a	99	68.571	ENSPNYG00000003386	lsm12b	89	68.571	Pundamilia_nyererei
ENSPMAG00000005461	lsm12a	99	63.429	ENSPNAG00000018435	lsm12a	89	63.429	Pygocentrus_nattereri
ENSPMAG00000005461	lsm12a	99	66.857	ENSPNAG00000004186	lsm12b	89	66.857	Pygocentrus_nattereri
ENSPMAG00000005461	lsm12a	99	66.279	ENSRNOG00000020894	Lsm12	88	66.279	Rattus_norvegicus
ENSPMAG00000005461	lsm12a	99	66.279	ENSRBIG00000027910	LSM12	88	66.279	Rhinopithecus_bieti
ENSPMAG00000005461	lsm12a	99	66.279	ENSRROG00000045530	-	96	65.663	Rhinopithecus_roxellana
ENSPMAG00000005461	lsm12a	99	66.279	ENSSBOG00000025310	LSM12	88	66.279	Saimiri_boliviensis_boliviensis
ENSPMAG00000005461	lsm12a	79	64.234	ENSSHAG00000014914	LSM12	87	64.234	Sarcophilus_harrisii
ENSPMAG00000005461	lsm12a	99	66.286	ENSSFOG00015009612	lsm12	89	66.286	Scleropages_formosus
ENSPMAG00000005461	lsm12a	99	66.286	ENSSFOG00015020392	lsm12a	89	66.286	Scleropages_formosus
ENSPMAG00000005461	lsm12a	99	67.429	ENSSMAG00000008089	lsm12b	89	67.429	Scophthalmus_maximus
ENSPMAG00000005461	lsm12a	99	68.000	ENSSDUG00000012711	lsm12b	89	68.000	Seriola_dumerili
ENSPMAG00000005461	lsm12a	99	68.000	ENSSLDG00000007404	lsm12b	89	68.000	Seriola_lalandi_dorsalis
ENSPMAG00000005461	lsm12a	76	65.909	ENSSARG00000005537	LSM12	86	65.909	Sorex_araneus
ENSPMAG00000005461	lsm12a	99	66.474	ENSSPUG00000011984	LSM12	89	66.474	Sphenodon_punctatus
ENSPMAG00000005461	lsm12a	99	68.000	ENSSPAG00000017058	lsm12b	89	68.000	Stegastes_partitus
ENSPMAG00000005461	lsm12a	99	66.279	ENSSSCG00000032394	LSM12	88	66.279	Sus_scrofa
ENSPMAG00000005461	lsm12a	99	68.000	ENSTRUG00000007121	lsm12b	89	68.000	Takifugu_rubripes
ENSPMAG00000005461	lsm12a	99	67.429	ENSTNIG00000014436	lsm12b	89	67.429	Tetraodon_nigroviridis
ENSPMAG00000005461	lsm12a	99	66.279	ENSTBEG00000012523	-	88	66.279	Tupaia_belangeri
ENSPMAG00000005461	lsm12a	99	64.535	ENSTBEG00000012392	-	88	64.535	Tupaia_belangeri
ENSPMAG00000005461	lsm12a	99	66.279	ENSTTRG00000010433	LSM12	88	66.279	Tursiops_truncatus
ENSPMAG00000005461	lsm12a	99	66.279	ENSUAMG00000006313	LSM12	88	66.279	Ursus_americanus
ENSPMAG00000005461	lsm12a	79	63.504	ENSUMAG00000012987	LSM12	78	63.504	Ursus_maritimus
ENSPMAG00000005461	lsm12a	99	61.628	ENSVPAG00000011145	LSM12	88	61.628	Vicugna_pacos
ENSPMAG00000005461	lsm12a	99	66.279	ENSVVUG00000017581	LSM12	88	66.279	Vulpes_vulpes
ENSPMAG00000005461	lsm12a	80	50.704	ENSXETG00000003371	lsm12	66	50.704	Xenopus_tropicalis
ENSPMAG00000005461	lsm12a	99	67.429	ENSXCOG00000003994	lsm12b	89	67.429	Xiphophorus_couchianus
ENSPMAG00000005461	lsm12a	99	67.429	ENSXMAG00000020950	lsm12b	89	67.429	Xiphophorus_maculatus