EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000005934 (Gene tree)
Gene ID: -
Gene Symbol: trnau1apa (1 of many)
Alias: -
Full Name: tRNA selenocysteine 1 associated protein 1a
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 7347 bases
Position: chrGL481685:1415-8761
Accession: ZDB-GENE-050522-502
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000006552	RRM_1	PF00076.22	6.3e-24	1	2
ENSPMAP00000006552	RRM_1	PF00076.22	6.3e-24	2	2
ENSPMAP00000006558	RRM_1	PF00076.22	6.6e-24	1	2
ENSPMAP00000006558	RRM_1	PF00076.22	6.6e-24	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000006587	-	684	-	ENSPMAP00000006558	228 (aa)	-	S4RMX2
ENSPMAT00000006581	-	672	-	ENSPMAP00000006552	224 (aa)	-	S4RMW6

Gene Model

Click here to download ENSPMAG00000005934's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000005934's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000005934	trnau1apa	99	36.585	ENSPMAG00000006529	tia1l	91	36.585
ENSPMAG00000005934	trnau1apa	76	58.960	ENSPMAG00000000592	trnau1apa	95	59.884

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000005934	trnau1apa	96	60.185	ENSG00000180098	TRNAU1AP	78	60.987	Homo_sapiens
ENSPMAG00000005934	trnau1apa	96	50.655	ENSAPOG00000007148	TRNAU1AP	76	52.000	Acanthochromis_polyacanthus
ENSPMAG00000005934	trnau1apa	96	59.722	ENSAMEG00000011367	TRNAU1AP	78	60.538	Ailuropoda_melanoleuca
ENSPMAG00000005934	trnau1apa	93	62.500	ENSACIG00000004161	trnau1apa	71	62.500	Amphilophus_citrinellus
ENSPMAG00000005934	trnau1apa	96	50.661	ENSAOCG00000008056	trnau1apa	74	51.982	Amphiprion_ocellaris
ENSPMAG00000005934	trnau1apa	96	50.661	ENSAPEG00000008868	trnau1apa	76	52.444	Amphiprion_percula
ENSPMAG00000005934	trnau1apa	96	47.257	ENSATEG00000012140	trnau1apa	75	49.789	Anabas_testudineus
ENSPMAG00000005934	trnau1apa	99	58.929	ENSAPLG00000002606	TRNAU1AP	82	60.714	Anas_platyrhynchos
ENSPMAG00000005934	trnau1apa	96	52.074	ENSACAG00000003995	-	75	53.917	Anolis_carolinensis
ENSPMAG00000005934	trnau1apa	96	60.185	ENSANAG00000018976	TRNAU1AP	78	60.987	Aotus_nancymaae
ENSPMAG00000005934	trnau1apa	96	49.558	ENSACLG00000018515	trnau1apa	74	50.885	Astatotilapia_calliptera
ENSPMAG00000005934	trnau1apa	91	54.762	ENSAMXG00000029240	-	64	54.762	Astyanax_mexicanus
ENSPMAG00000005934	trnau1apa	93	48.837	ENSAMXG00000013750	trnau1apa	70	48.837	Astyanax_mexicanus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSBTAG00000010393	TRNAU1AP	78	60.987	Bos_taurus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSCJAG00000009717	TRNAU1AP	85	60.563	Callithrix_jacchus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSCAFG00000011735	TRNAU1AP	78	60.987	Canis_familiaris
ENSPMAG00000005934	trnau1apa	99	58.744	ENSCAFG00020023584	TRNAU1AP	78	60.987	Canis_lupus_dingo
ENSPMAG00000005934	trnau1apa	96	60.185	ENSCHIG00000023215	TRNAU1AP	78	60.987	Capra_hircus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSTSYG00000003506	TRNAU1AP	85	60.563	Carlito_syrichta
ENSPMAG00000005934	trnau1apa	96	60.185	ENSCPOG00000001925	TRNAU1AP	78	60.987	Cavia_porcellus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSCCAG00000037506	TRNAU1AP	85	60.563	Cebus_capucinus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSCATG00000044617	TRNAU1AP	85	60.563	Cercocebus_atys
ENSPMAG00000005934	trnau1apa	96	60.185	ENSCLAG00000008223	TRNAU1AP	78	60.987	Chinchilla_lanigera
ENSPMAG00000005934	trnau1apa	96	60.185	ENSCSAG00000001014	TRNAU1AP	78	60.987	Chlorocebus_sabaeus
ENSPMAG00000005934	trnau1apa	94	58.491	ENSCPBG00000000121	TRNAU1AP	77	61.792	Chrysemys_picta_bellii
ENSPMAG00000005934	trnau1apa	77	51.744	ENSCSAVG00000011781	-	90	51.744	Ciona_savignyi
ENSPMAG00000005934	trnau1apa	99	48.430	ENSCANG00000041949	TRNAU1AP	64	62.281	Colobus_angolensis_palliatus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSCGRG00001004713	Trnau1ap	78	60.987	Cricetulus_griseus_chok1gshd
ENSPMAG00000005934	trnau1apa	96	60.185	ENSCGRG00000014532	Trnau1ap	78	60.987	Cricetulus_griseus_crigri
ENSPMAG00000005934	trnau1apa	90	47.489	ENSCSEG00000006663	trnau1apa	72	49.107	Cynoglossus_semilaevis
ENSPMAG00000005934	trnau1apa	96	53.275	ENSCVAG00000018069	trnau1apa	77	53.846	Cyprinodon_variegatus
ENSPMAG00000005934	trnau1apa	86	46.000	ENSDARG00000101323	trnau1apa	63	46.000	Danio_rerio
ENSPMAG00000005934	trnau1apa	96	60.185	ENSDNOG00000033009	TRNAU1AP	78	60.987	Dasypus_novemcinctus
ENSPMAG00000005934	trnau1apa	76	51.765	ENSDNOG00000047959	-	88	51.765	Dasypus_novemcinctus
ENSPMAG00000005934	trnau1apa	98	60.000	ENSDORG00000006349	Trnau1ap	97	60.987	Dipodomys_ordii
ENSPMAG00000005934	trnau1apa	96	43.860	FBgn0031607	CG15440	68	43.860	Drosophila_melanogaster
ENSPMAG00000005934	trnau1apa	81	59.890	ENSETEG00000012594	TRNAU1AP	74	62.637	Echinops_telfairi
ENSPMAG00000005934	trnau1apa	50	64.800	ENSEBUG00000004709	-	66	64.286	Eptatretus_burgeri
ENSPMAG00000005934	trnau1apa	96	60.185	ENSEASG00005010062	TRNAU1AP	83	64.179	Equus_asinus_asinus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSECAG00000012980	TRNAU1AP	83	64.179	Equus_caballus
ENSPMAG00000005934	trnau1apa	86	54.000	ENSELUG00000017686	trnau1apa	76	51.570	Esox_lucius
ENSPMAG00000005934	trnau1apa	96	60.185	ENSFCAG00000013401	TRNAU1AP	78	60.987	Felis_catus
ENSPMAG00000005934	trnau1apa	94	59.434	ENSFALG00000001371	TRNAU1AP	77	62.264	Ficedula_albicollis
ENSPMAG00000005934	trnau1apa	96	60.185	ENSFDAG00000018599	TRNAU1AP	78	60.987	Fukomys_damarensis
ENSPMAG00000005934	trnau1apa	96	50.847	ENSFHEG00000018232	trnau1apa	80	51.293	Fundulus_heteroclitus
ENSPMAG00000005934	trnau1apa	90	48.095	ENSGMOG00000016508	trnau1apa	73	47.748	Gadus_morhua
ENSPMAG00000005934	trnau1apa	96	59.908	ENSGALG00000001310	-	85	61.435	Gallus_gallus
ENSPMAG00000005934	trnau1apa	56	46.457	ENSGALG00000012721	C2H6orf52	53	46.479	Gallus_gallus
ENSPMAG00000005934	trnau1apa	96	49.782	ENSGAFG00000004928	trnau1apa	86	51.528	Gambusia_affinis
ENSPMAG00000005934	trnau1apa	96	50.655	ENSGACG00000001443	trnau1apa	74	52.863	Gasterosteus_aculeatus
ENSPMAG00000005934	trnau1apa	94	58.962	ENSGAGG00000004940	TRNAU1AP	77	61.792	Gopherus_agassizii
ENSPMAG00000005934	trnau1apa	96	60.185	ENSGGOG00000003511	TRNAU1AP	85	60.563	Gorilla_gorilla
ENSPMAG00000005934	trnau1apa	96	48.485	ENSHBUG00000002510	trnau1apa	75	49.784	Haplochromis_burtoni
ENSPMAG00000005934	trnau1apa	96	60.648	ENSHGLG00000010380	TRNAU1AP	78	61.435	Heterocephalus_glaber_female
ENSPMAG00000005934	trnau1apa	92	60.096	ENSHGLG00100012699	TRNAU1AP	73	62.500	Heterocephalus_glaber_male
ENSPMAG00000005934	trnau1apa	96	48.707	ENSHCOG00000014770	trnau1apa	75	48.707	Hippocampus_comes
ENSPMAG00000005934	trnau1apa	96	60.185	ENSSTOG00000000079	TRNAU1AP	78	60.987	Ictidomys_tridecemlineatus
ENSPMAG00000005934	trnau1apa	97	60.092	ENSJJAG00000010128	Trnau1ap	78	60.987	Jaculus_jaculus
ENSPMAG00000005934	trnau1apa	96	51.293	ENSKMAG00000001230	trnau1apa	74	51.528	Kryptolebias_marmoratus
ENSPMAG00000005934	trnau1apa	96	51.502	ENSLBEG00000011683	trnau1apa	74	51.502	Labrus_bergylta
ENSPMAG00000005934	trnau1apa	99	49.327	ENSLACG00000005541	TRNAU1AP	78	51.121	Latimeria_chalumnae
ENSPMAG00000005934	trnau1apa	98	53.778	ENSLOCG00000004041	trnau1apa	78	54.585	Lepisosteus_oculatus
ENSPMAG00000005934	trnau1apa	96	60.648	ENSLAFG00000007628	TRNAU1AP	78	61.435	Loxodonta_africana
ENSPMAG00000005934	trnau1apa	96	60.185	ENSMFAG00000043751	TRNAU1AP	85	60.563	Macaca_fascicularis
ENSPMAG00000005934	trnau1apa	96	60.185	ENSMMUG00000006561	TRNAU1AP	78	60.987	Macaca_mulatta
ENSPMAG00000005934	trnau1apa	96	60.185	ENSMNEG00000044201	TRNAU1AP	85	60.563	Macaca_nemestrina
ENSPMAG00000005934	trnau1apa	96	60.185	ENSMLEG00000015649	TRNAU1AP	85	60.563	Mandrillus_leucophaeus
ENSPMAG00000005934	trnau1apa	96	52.093	ENSMAMG00000001247	trnau1apa	77	52.995	Mastacembelus_armatus
ENSPMAG00000005934	trnau1apa	96	49.558	ENSMZEG00005017722	trnau1apa	74	50.885	Maylandia_zebra
ENSPMAG00000005934	trnau1apa	96	61.111	ENSMGAG00000002105	TRNAU1AP	78	62.963	Meleagris_gallopavo
ENSPMAG00000005934	trnau1apa	96	60.185	ENSMICG00000008386	TRNAU1AP	85	60.563	Microcebus_murinus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSMOCG00000011189	Trnau1ap	78	60.987	Microtus_ochrogaster
ENSPMAG00000005934	trnau1apa	96	49.537	ENSMMOG00000012107	trnau1apa	74	50.000	Mola_mola
ENSPMAG00000005934	trnau1apa	99	58.333	ENSMODG00000010927	TRNAU1AP	75	62.500	Monodelphis_domestica
ENSPMAG00000005934	trnau1apa	96	50.000	ENSMALG00000016778	trnau1apa	75	51.724	Monopterus_albus
ENSPMAG00000005934	trnau1apa	98	62.637	MGP_CAROLIEiJ_G0026563	Trnau1ap	95	62.637	Mus_caroli
ENSPMAG00000005934	trnau1apa	98	62.637	ENSMUSG00000028898	Trnau1ap	95	62.637	Mus_musculus
ENSPMAG00000005934	trnau1apa	98	62.637	MGP_PahariEiJ_G0028896	Trnau1ap	95	62.637	Mus_pahari
ENSPMAG00000005934	trnau1apa	98	62.637	MGP_SPRETEiJ_G0027544	Trnau1ap	95	62.637	Mus_spretus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSMPUG00000015511	TRNAU1AP	78	60.987	Mustela_putorius_furo
ENSPMAG00000005934	trnau1apa	96	60.185	ENSMLUG00000012586	TRNAU1AP	78	60.987	Myotis_lucifugus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSNGAG00000015881	Trnau1ap	78	60.987	Nannospalax_galili
ENSPMAG00000005934	trnau1apa	96	49.309	ENSNBRG00000001758	trnau1apa	72	50.459	Neolamprologus_brichardi
ENSPMAG00000005934	trnau1apa	96	60.185	ENSNLEG00000009822	TRNAU1AP	85	60.563	Nomascus_leucogenys
ENSPMAG00000005934	trnau1apa	96	61.111	ENSMEUG00000006117	TRNAU1AP	78	62.037	Notamacropus_eugenii
ENSPMAG00000005934	trnau1apa	96	60.185	ENSODEG00000002970	TRNAU1AP	78	60.987	Octodon_degus
ENSPMAG00000005934	trnau1apa	97	49.123	ENSONIG00000004715	trnau1apa	90	50.655	Oreochromis_niloticus
ENSPMAG00000005934	trnau1apa	96	47.511	ENSOANG00000005325	-	75	48.402	Ornithorhynchus_anatinus
ENSPMAG00000005934	trnau1apa	75	55.621	ENSOCUG00000002353	-	59	55.952	Oryctolagus_cuniculus
ENSPMAG00000005934	trnau1apa	96	50.698	ENSOCUG00000006834	-	84	50.698	Oryctolagus_cuniculus
ENSPMAG00000005934	trnau1apa	96	59.722	ENSOCUG00000011704	-	78	60.538	Oryctolagus_cuniculus
ENSPMAG00000005934	trnau1apa	96	56.364	ENSORLG00000010428	trnau1apa	75	56.364	Oryzias_latipes
ENSPMAG00000005934	trnau1apa	96	54.867	ENSORLG00020000926	trnau1ap	74	54.867	Oryzias_latipes_hni
ENSPMAG00000005934	trnau1apa	96	54.867	ENSORLG00015009858	trnau1ap	74	54.867	Oryzias_latipes_hsok
ENSPMAG00000005934	trnau1apa	96	54.867	ENSOMEG00000007873	trnau1apa	74	54.867	Oryzias_melastigma
ENSPMAG00000005934	trnau1apa	96	60.185	ENSOGAG00000002274	TRNAU1AP	78	60.987	Otolemur_garnettii
ENSPMAG00000005934	trnau1apa	96	60.185	ENSOARG00000002843	TRNAU1AP	78	60.987	Ovis_aries
ENSPMAG00000005934	trnau1apa	96	60.185	ENSPPAG00000033927	TRNAU1AP	85	60.563	Pan_paniscus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSPPRG00000004416	TRNAU1AP	78	60.987	Panthera_pardus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSPTIG00000016677	TRNAU1AP	78	60.987	Panthera_tigris_altaica
ENSPMAG00000005934	trnau1apa	67	62.000	ENSPTRG00000000434	-	69	55.155	Pan_troglodytes
ENSPMAG00000005934	trnau1apa	96	60.185	ENSPANG00000016019	TRNAU1AP	85	60.563	Papio_anubis
ENSPMAG00000005934	trnau1apa	96	49.780	ENSPKIG00000015511	trnau1apa	74	49.780	Paramormyrops_kingsleyae
ENSPMAG00000005934	trnau1apa	94	60.377	ENSPSIG00000006864	TRNAU1AP	77	62.264	Pelodiscus_sinensis
ENSPMAG00000005934	trnau1apa	96	50.691	ENSPMGG00000023893	trnau1apa	73	52.315	Periophthalmus_magnuspinnatus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSPEMG00000007877	Trnau1ap	78	60.987	Peromyscus_maniculatus_bairdii
ENSPMAG00000005934	trnau1apa	96	49.782	ENSPFOG00000008100	trnau1apa	74	51.528	Poecilia_formosa
ENSPMAG00000005934	trnau1apa	95	49.778	ENSPLAG00000010236	trnau1apa	76	51.556	Poecilia_latipinna
ENSPMAG00000005934	trnau1apa	99	49.153	ENSPMEG00000016387	trnau1apa	75	50.847	Poecilia_mexicana
ENSPMAG00000005934	trnau1apa	86	60.241	ENSPREG00000019821	trnau1apa	62	60.241	Poecilia_reticulata
ENSPMAG00000005934	trnau1apa	86	50.769	ENSPPYG00000001639	-	76	53.333	Pongo_abelii
ENSPMAG00000005934	trnau1apa	96	60.369	ENSPCOG00000027712	-	78	60.987	Propithecus_coquereli
ENSPMAG00000005934	trnau1apa	58	56.923	ENSPCOG00000023470	-	73	48.611	Propithecus_coquereli
ENSPMAG00000005934	trnau1apa	96	60.185	ENSPVAG00000017214	TRNAU1AP	78	60.987	Pteropus_vampyrus
ENSPMAG00000005934	trnau1apa	96	48.485	ENSPNYG00000010130	trnau1apa	89	49.784	Pundamilia_nyererei
ENSPMAG00000005934	trnau1apa	92	48.792	ENSPNAG00000024905	trnau1apa	72	47.297	Pygocentrus_nattereri
ENSPMAG00000005934	trnau1apa	96	59.908	ENSRNOG00000055344	Trnau1ap	74	62.500	Rattus_norvegicus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSRBIG00000029083	TRNAU1AP	85	60.563	Rhinopithecus_bieti
ENSPMAG00000005934	trnau1apa	96	60.185	ENSRROG00000029128	TRNAU1AP	85	60.563	Rhinopithecus_roxellana
ENSPMAG00000005934	trnau1apa	96	60.185	ENSSBOG00000021299	TRNAU1AP	85	60.563	Saimiri_boliviensis_boliviensis
ENSPMAG00000005934	trnau1apa	99	58.333	ENSSHAG00000008108	TRNAU1AP	75	62.500	Sarcophilus_harrisii
ENSPMAG00000005934	trnau1apa	74	56.364	ENSSMAG00000020851	trnau1apa	75	49.138	Scophthalmus_maximus
ENSPMAG00000005934	trnau1apa	96	48.927	ENSSDUG00000011734	trnau1apa	74	50.644	Seriola_dumerili
ENSPMAG00000005934	trnau1apa	96	42.326	ENSSLDG00000012101	trnau1apa	71	44.186	Seriola_lalandi_dorsalis
ENSPMAG00000005934	trnau1apa	96	59.722	ENSSARG00000007536	TRNAU1AP	78	62.037	Sorex_araneus
ENSPMAG00000005934	trnau1apa	96	58.796	ENSSPUG00000010400	-	76	60.648	Sphenodon_punctatus
ENSPMAG00000005934	trnau1apa	50	58.772	ENSSPUG00000010415	-	65	58.772	Sphenodon_punctatus
ENSPMAG00000005934	trnau1apa	96	52.193	ENSSPAG00000005029	trnau1apa	74	53.509	Stegastes_partitus
ENSPMAG00000005934	trnau1apa	97	60.550	ENSSSCG00000030284	TRNAU1AP	78	60.987	Sus_scrofa
ENSPMAG00000005934	trnau1apa	56	47.619	ENSTGUG00000005908	-	64	50.794	Taeniopygia_guttata
ENSPMAG00000005934	trnau1apa	96	60.648	ENSTGUG00000000735	-	78	62.963	Taeniopygia_guttata
ENSPMAG00000005934	trnau1apa	96	50.439	ENSTRUG00000003352	trnau1apa	74	50.439	Takifugu_rubripes
ENSPMAG00000005934	trnau1apa	96	49.138	ENSTNIG00000006129	trnau1apa	74	50.431	Tetraodon_nigroviridis
ENSPMAG00000005934	trnau1apa	81	51.648	ENSTBEG00000008049	-	74	56.044	Tupaia_belangeri
ENSPMAG00000005934	trnau1apa	96	60.185	ENSTTRG00000001854	TRNAU1AP	78	60.987	Tursiops_truncatus
ENSPMAG00000005934	trnau1apa	94	59.906	ENSUAMG00000008789	TRNAU1AP	77	62.264	Ursus_americanus
ENSPMAG00000005934	trnau1apa	96	60.185	ENSUMAG00000011068	TRNAU1AP	78	60.987	Ursus_maritimus
ENSPMAG00000005934	trnau1apa	81	59.890	ENSVPAG00000006778	TRNAU1AP	78	53.509	Vicugna_pacos
ENSPMAG00000005934	trnau1apa	97	60.092	ENSVVUG00000012518	TRNAU1AP	75	60.987	Vulpes_vulpes
ENSPMAG00000005934	trnau1apa	96	49.782	ENSXMAG00000017361	trnau1apa	74	51.528	Xiphophorus_maculatus