EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000006078 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 10608 bases
Position: chrGL476370:291070-301677
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000006757	SRP54	PF00448.22	4.2e-77	1	1
ENSPMAP00000006757	SRP54_N	PF02881.19	1.5e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000006787	-	2014	-	ENSPMAP00000006757	504 (aa)	-	S4RNH1

Gene Model

Click here to download ENSPMAG00000006078's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000006078's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000006078	-	100	88.690	ENSG00000100883	SRP54	100	90.698	Homo_sapiens
ENSPMAG00000006078	-	100	90.278	ENSAPOG00000011314	srp54	100	90.278	Acanthochromis_polyacanthus
ENSPMAG00000006078	-	100	88.690	ENSAMEG00000015544	SRP54	100	88.690	Ailuropoda_melanoleuca
ENSPMAG00000006078	-	89	91.982	ENSACIG00000022831	srp54	97	91.982	Amphilophus_citrinellus
ENSPMAG00000006078	-	100	90.278	ENSAOCG00000019401	srp54	100	90.278	Amphiprion_ocellaris
ENSPMAG00000006078	-	100	90.278	ENSAPEG00000001977	srp54	100	90.278	Amphiprion_percula
ENSPMAG00000006078	-	100	90.278	ENSATEG00000013877	srp54	100	90.278	Anabas_testudineus
ENSPMAG00000006078	-	94	90.295	ENSAPLG00000010125	SRP54	95	90.295	Anas_platyrhynchos
ENSPMAG00000006078	-	65	75.227	ENSACAG00000001124	-	100	75.227	Anolis_carolinensis
ENSPMAG00000006078	-	86	85.714	ENSACAG00000010631	-	100	85.714	Anolis_carolinensis
ENSPMAG00000006078	-	100	88.294	ENSACAG00000002103	-	100	88.294	Anolis_carolinensis
ENSPMAG00000006078	-	100	88.690	ENSANAG00000022133	SRP54	100	88.690	Aotus_nancymaae
ENSPMAG00000006078	-	100	90.079	ENSACLG00000015866	srp54	100	90.079	Astatotilapia_calliptera
ENSPMAG00000006078	-	100	90.476	ENSAMXG00000032669	SRP54	100	90.476	Astyanax_mexicanus
ENSPMAG00000006078	-	100	88.690	ENSBTAG00000019085	SRP54	100	88.690	Bos_taurus
ENSPMAG00000006078	-	96	73.211	WBGene00009012	F21D5.7	99	73.211	Caenorhabditis_elegans
ENSPMAG00000006078	-	100	88.690	ENSCJAG00000006581	SRP54	100	88.690	Callithrix_jacchus
ENSPMAG00000006078	-	100	88.690	ENSCAFG00000013331	SRP54	100	88.690	Canis_familiaris
ENSPMAG00000006078	-	100	88.690	ENSCAFG00020023427	SRP54	100	88.690	Canis_lupus_dingo
ENSPMAG00000006078	-	100	88.690	ENSCHIG00000026345	SRP54	100	88.690	Capra_hircus
ENSPMAG00000006078	-	100	88.492	ENSTSYG00000002680	-	100	88.492	Carlito_syrichta
ENSPMAG00000006078	-	94	79.158	ENSTSYG00000035333	-	93	79.158	Carlito_syrichta
ENSPMAG00000006078	-	94	58.571	ENSCAPG00000008780	SRP54	100	58.571	Cavia_aperea
ENSPMAG00000006078	-	100	88.294	ENSCPOG00000003691	SRP54	100	88.294	Cavia_porcellus
ENSPMAG00000006078	-	92	86.374	ENSCCAG00000024179	SRP54	100	88.544	Cebus_capucinus
ENSPMAG00000006078	-	100	88.690	ENSCATG00000034083	SRP54	100	88.690	Cercocebus_atys
ENSPMAG00000006078	-	100	88.690	ENSCLAG00000015076	SRP54	100	88.690	Chinchilla_lanigera
ENSPMAG00000006078	-	100	88.690	ENSCSAG00000015575	SRP54	100	88.690	Chlorocebus_sabaeus
ENSPMAG00000006078	-	95	80.457	ENSCHOG00000008986	SRP54	100	80.457	Choloepus_hoffmanni
ENSPMAG00000006078	-	100	88.889	ENSCPBG00000026195	SRP54	100	88.889	Chrysemys_picta_bellii
ENSPMAG00000006078	-	98	82.317	ENSCING00000007380	-	98	82.317	Ciona_intestinalis
ENSPMAG00000006078	-	100	88.690	ENSCANG00000028532	SRP54	100	88.690	Colobus_angolensis_palliatus
ENSPMAG00000006078	-	100	89.087	ENSCGRG00001009525	-	100	89.087	Cricetulus_griseus_chok1gshd
ENSPMAG00000006078	-	76	92.468	ENSCGRG00000009453	-	89	92.468	Cricetulus_griseus_crigri
ENSPMAG00000006078	-	100	89.881	ENSCSEG00000012392	srp54	100	89.881	Cynoglossus_semilaevis
ENSPMAG00000006078	-	100	90.278	ENSCVAG00000010395	srp54	100	90.278	Cyprinodon_variegatus
ENSPMAG00000006078	-	100	90.079	ENSDARG00000098367	srp54	100	90.079	Danio_rerio
ENSPMAG00000006078	-	100	88.690	ENSDNOG00000032525	SRP54	100	88.690	Dasypus_novemcinctus
ENSPMAG00000006078	-	90	77.042	ENSDORG00000005159	-	98	77.042	Dipodomys_ordii
ENSPMAG00000006078	-	96	79.588	FBgn0010747	Srp54k	98	79.074	Drosophila_melanogaster
ENSPMAG00000006078	-	81	51.970	ENSETEG00000012102	-	98	51.970	Echinops_telfairi
ENSPMAG00000006078	-	100	87.897	ENSETEG00000016307	-	100	87.897	Echinops_telfairi
ENSPMAG00000006078	-	100	93.056	ENSEBUG00000009437	-	100	93.056	Eptatretus_burgeri
ENSPMAG00000006078	-	100	88.690	ENSEASG00005002057	SRP54	100	88.690	Equus_asinus_asinus
ENSPMAG00000006078	-	98	89.718	ENSECAG00000018042	SRP54	98	89.718	Equus_caballus
ENSPMAG00000006078	-	100	74.008	ENSEEUG00000001511	SRP54	100	74.008	Erinaceus_europaeus
ENSPMAG00000006078	-	100	89.881	ENSELUG00000003395	srp54	100	89.881	Esox_lucius
ENSPMAG00000006078	-	100	88.889	ENSFCAG00000032033	SRP54	100	88.889	Felis_catus
ENSPMAG00000006078	-	100	88.492	ENSFALG00000005995	SRP54	100	88.492	Ficedula_albicollis
ENSPMAG00000006078	-	100	88.690	ENSFDAG00000016767	SRP54	99	90.224	Fukomys_damarensis
ENSPMAG00000006078	-	100	89.881	ENSFHEG00000004263	srp54	100	89.881	Fundulus_heteroclitus
ENSPMAG00000006078	-	95	85.146	ENSGMOG00000011391	srp54	100	85.146	Gadus_morhua
ENSPMAG00000006078	-	100	88.492	ENSGALG00000023135	SRP54	100	88.492	Gallus_gallus
ENSPMAG00000006078	-	100	90.476	ENSGAFG00000011586	srp54	100	90.476	Gambusia_affinis
ENSPMAG00000006078	-	100	89.881	ENSGACG00000004181	srp54	100	92.396	Gasterosteus_aculeatus
ENSPMAG00000006078	-	100	88.889	ENSGAGG00000014766	SRP54	100	88.889	Gopherus_agassizii
ENSPMAG00000006078	-	100	88.690	ENSGGOG00000002926	SRP54	100	88.690	Gorilla_gorilla
ENSPMAG00000006078	-	100	90.079	ENSHBUG00000005678	srp54	100	90.079	Haplochromis_burtoni
ENSPMAG00000006078	-	100	88.690	ENSHGLG00000002850	SRP54	100	88.690	Heterocephalus_glaber_female
ENSPMAG00000006078	-	100	60.792	ENSHGLG00100007281	-	100	60.792	Heterocephalus_glaber_male
ENSPMAG00000006078	-	100	88.690	ENSHGLG00100005263	SRP54	100	88.690	Heterocephalus_glaber_male
ENSPMAG00000006078	-	100	89.683	ENSHCOG00000021127	srp54	100	89.683	Hippocampus_comes
ENSPMAG00000006078	-	100	90.873	ENSIPUG00000001420	srp54	100	90.873	Ictalurus_punctatus
ENSPMAG00000006078	-	100	88.690	ENSSTOG00000016023	SRP54	100	88.690	Ictidomys_tridecemlineatus
ENSPMAG00000006078	-	87	68.182	ENSJJAG00000016404	-	100	68.182	Jaculus_jaculus
ENSPMAG00000006078	-	100	84.127	ENSJJAG00000013417	-	100	84.127	Jaculus_jaculus
ENSPMAG00000006078	-	100	89.881	ENSKMAG00000007707	srp54	100	89.881	Kryptolebias_marmoratus
ENSPMAG00000006078	-	100	90.278	ENSLBEG00000018690	srp54	100	90.278	Labrus_bergylta
ENSPMAG00000006078	-	100	90.278	ENSLBEG00000021122	srp54	100	90.278	Labrus_bergylta
ENSPMAG00000006078	-	100	89.286	ENSLACG00000017890	SRP54	100	89.286	Latimeria_chalumnae
ENSPMAG00000006078	-	100	90.278	ENSLOCG00000009440	srp54	100	90.278	Lepisosteus_oculatus
ENSPMAG00000006078	-	100	88.690	ENSLAFG00000012007	SRP54	100	88.690	Loxodonta_africana
ENSPMAG00000006078	-	100	88.690	ENSMFAG00000044371	SRP54	100	88.690	Macaca_fascicularis
ENSPMAG00000006078	-	100	88.690	ENSMMUG00000015073	FAM177A1	100	88.690	Macaca_mulatta
ENSPMAG00000006078	-	100	88.690	ENSMNEG00000006947	SRP54	100	88.690	Macaca_nemestrina
ENSPMAG00000006078	-	100	88.690	ENSMLEG00000042251	SRP54	100	88.690	Mandrillus_leucophaeus
ENSPMAG00000006078	-	100	90.079	ENSMAMG00000004803	srp54	100	90.079	Mastacembelus_armatus
ENSPMAG00000006078	-	100	90.079	ENSMZEG00005027528	srp54	100	90.079	Maylandia_zebra
ENSPMAG00000006078	-	100	84.190	ENSMGAG00000012481	SRP54	100	84.190	Meleagris_gallopavo
ENSPMAG00000006078	-	100	88.889	ENSMAUG00000014447	-	100	88.889	Mesocricetus_auratus
ENSPMAG00000006078	-	100	88.690	ENSMICG00000010270	SRP54	100	88.690	Microcebus_murinus
ENSPMAG00000006078	-	87	88.636	ENSMOCG00000000948	-	100	88.636	Microtus_ochrogaster
ENSPMAG00000006078	-	89	91.275	ENSMMOG00000020303	srp54	98	91.275	Mola_mola
ENSPMAG00000006078	-	100	88.690	ENSMODG00000012925	-	100	88.690	Monodelphis_domestica
ENSPMAG00000006078	-	100	88.690	ENSMODG00000023150	-	100	88.690	Monodelphis_domestica
ENSPMAG00000006078	-	88	92.325	ENSMALG00000009163	srp54	98	92.325	Monopterus_albus
ENSPMAG00000006078	-	100	88.889	MGP_CAROLIEiJ_G0017754	-	100	88.889	Mus_caroli
ENSPMAG00000006078	-	100	88.889	ENSMUSG00000112449	Srp54b	100	88.889	Mus_musculus
ENSPMAG00000006078	-	100	88.095	ENSMUSG00000079108	Srp54c	100	88.095	Mus_musculus
ENSPMAG00000006078	-	100	88.889	ENSMUSG00000073079	Srp54a	100	89.091	Mus_musculus
ENSPMAG00000006078	-	100	88.889	MGP_PahariEiJ_G0029510	-	100	88.889	Mus_pahari
ENSPMAG00000006078	-	100	88.690	ENSMPUG00000016302	SRP54	100	88.690	Mustela_putorius_furo
ENSPMAG00000006078	-	100	88.095	ENSMLUG00000008958	SRP54	100	88.095	Myotis_lucifugus
ENSPMAG00000006078	-	100	80.556	ENSNGAG00000019806	-	100	80.556	Nannospalax_galili
ENSPMAG00000006078	-	87	89.773	ENSNBRG00000006000	srp54	100	89.773	Neolamprologus_brichardi
ENSPMAG00000006078	-	100	88.690	ENSNLEG00000003496	SRP54	100	88.690	Nomascus_leucogenys
ENSPMAG00000006078	-	67	91.786	ENSMEUG00000000138	-	76	91.786	Notamacropus_eugenii
ENSPMAG00000006078	-	58	91.667	ENSOPRG00000014502	-	60	91.667	Ochotona_princeps
ENSPMAG00000006078	-	100	88.690	ENSODEG00000004865	SRP54	100	88.690	Octodon_degus
ENSPMAG00000006078	-	100	90.079	ENSONIG00000011768	srp54	100	90.079	Oreochromis_niloticus
ENSPMAG00000006078	-	100	88.690	ENSOANG00000014051	SRP54	100	88.690	Ornithorhynchus_anatinus
ENSPMAG00000006078	-	100	88.095	ENSOCUG00000007838	SRP54	100	88.095	Oryctolagus_cuniculus
ENSPMAG00000006078	-	100	89.881	ENSORLG00000010027	srp54	100	89.881	Oryzias_latipes
ENSPMAG00000006078	-	100	89.881	ENSORLG00020001878	srp54	100	89.881	Oryzias_latipes_hni
ENSPMAG00000006078	-	100	89.881	ENSORLG00015021866	srp54	100	89.881	Oryzias_latipes_hsok
ENSPMAG00000006078	-	100	90.079	ENSOMEG00000020952	srp54	100	90.079	Oryzias_melastigma
ENSPMAG00000006078	-	100	88.690	ENSOGAG00000012188	SRP54	100	88.690	Otolemur_garnettii
ENSPMAG00000006078	-	100	88.690	ENSOARG00000007160	SRP54	100	88.690	Ovis_aries
ENSPMAG00000006078	-	100	88.690	ENSPPAG00000017434	SRP54	100	88.690	Pan_paniscus
ENSPMAG00000006078	-	100	88.294	ENSPPRG00000014047	SRP54	100	88.294	Panthera_pardus
ENSPMAG00000006078	-	100	88.889	ENSPTIG00000000744	SRP54	96	88.889	Panthera_tigris_altaica
ENSPMAG00000006078	-	100	88.690	ENSPTRG00000006259	FAM177A1	100	88.690	Pan_troglodytes
ENSPMAG00000006078	-	100	88.690	ENSPANG00000023853	SRP54	100	88.690	Papio_anubis
ENSPMAG00000006078	-	100	90.675	ENSPKIG00000001953	srp54	100	90.675	Paramormyrops_kingsleyae
ENSPMAG00000006078	-	100	88.690	ENSPSIG00000006476	SRP54	100	88.690	Pelodiscus_sinensis
ENSPMAG00000006078	-	90	91.410	ENSPMGG00000004127	srp54	98	91.410	Periophthalmus_magnuspinnatus
ENSPMAG00000006078	-	100	77.579	ENSPEMG00000019634	-	100	77.579	Peromyscus_maniculatus_bairdii
ENSPMAG00000006078	-	100	88.690	ENSPCIG00000016175	SRP54	100	88.690	Phascolarctos_cinereus
ENSPMAG00000006078	-	100	90.476	ENSPFOG00000008870	srp54	100	90.476	Poecilia_formosa
ENSPMAG00000006078	-	100	90.476	ENSPLAG00000009889	srp54	100	90.476	Poecilia_latipinna
ENSPMAG00000006078	-	100	90.476	ENSPMEG00000008601	srp54	100	90.476	Poecilia_mexicana
ENSPMAG00000006078	-	100	90.476	ENSPREG00000004505	srp54	100	90.476	Poecilia_reticulata
ENSPMAG00000006078	-	100	83.929	ENSPPYG00000005739	SRP54	100	83.929	Pongo_abelii
ENSPMAG00000006078	-	100	85.714	ENSPCAG00000006268	SRP54	100	85.714	Procavia_capensis
ENSPMAG00000006078	-	100	86.931	ENSPCOG00000022473	SRP54	100	86.931	Propithecus_coquereli
ENSPMAG00000006078	-	63	92.825	ENSPVAG00000010056	SRP54	82	92.825	Pteropus_vampyrus
ENSPMAG00000006078	-	100	90.079	ENSPNYG00000009717	srp54	100	90.079	Pundamilia_nyererei
ENSPMAG00000006078	-	100	90.278	ENSPNAG00000008544	srp54	100	90.278	Pygocentrus_nattereri
ENSPMAG00000006078	-	100	88.690	ENSRNOG00000032776	Srp54a	100	88.690	Rattus_norvegicus
ENSPMAG00000006078	-	100	88.690	ENSRROG00000041292	SRP54	100	88.690	Rhinopithecus_roxellana
ENSPMAG00000006078	-	95	48.400	YPR088C	SRP54	95	47.692	Saccharomyces_cerevisiae
ENSPMAG00000006078	-	94	88.397	ENSSBOG00000035145	SRP54	100	88.397	Saimiri_boliviensis_boliviensis
ENSPMAG00000006078	-	68	87.755	ENSSHAG00000000671	SRP54	100	87.755	Sarcophilus_harrisii
ENSPMAG00000006078	-	100	90.476	ENSSFOG00015013920	srp54	100	90.476	Scleropages_formosus
ENSPMAG00000006078	-	100	84.644	ENSSMAG00000002441	srp54	100	84.644	Scophthalmus_maximus
ENSPMAG00000006078	-	100	90.079	ENSSDUG00000018586	srp54	100	90.079	Seriola_dumerili
ENSPMAG00000006078	-	100	90.278	ENSSLDG00000010476	srp54	100	90.278	Seriola_lalandi_dorsalis
ENSPMAG00000006078	-	100	88.690	ENSSARG00000002744	SRP54	100	88.690	Sorex_araneus
ENSPMAG00000006078	-	100	88.889	ENSSPUG00000013101	SRP54	100	88.889	Sphenodon_punctatus
ENSPMAG00000006078	-	100	90.278	ENSSPAG00000002354	srp54	100	90.278	Stegastes_partitus
ENSPMAG00000006078	-	100	88.690	ENSSSCG00000001955	SRP54	100	88.690	Sus_scrofa
ENSPMAG00000006078	-	94	90.295	ENSTGUG00000011945	-	95	90.295	Taeniopygia_guttata
ENSPMAG00000006078	-	100	89.683	ENSTRUG00000007057	srp54	100	89.683	Takifugu_rubripes
ENSPMAG00000006078	-	100	89.286	ENSTNIG00000002589	srp54	100	89.286	Tetraodon_nigroviridis
ENSPMAG00000006078	-	89	80.089	ENSTBEG00000011409	SRP54	100	80.089	Tupaia_belangeri
ENSPMAG00000006078	-	100	80.556	ENSTTRG00000000928	SRP54	100	80.556	Tursiops_truncatus
ENSPMAG00000006078	-	52	89.695	ENSUAMG00000012385	SRP54	100	89.695	Ursus_americanus
ENSPMAG00000006078	-	100	88.690	ENSUMAG00000011234	SRP54	100	88.690	Ursus_maritimus
ENSPMAG00000006078	-	94	90.295	ENSVPAG00000005668	SRP54	100	90.295	Vicugna_pacos
ENSPMAG00000006078	-	100	88.690	ENSVVUG00000019962	SRP54	100	88.690	Vulpes_vulpes
ENSPMAG00000006078	-	100	75.740	ENSXETG00000012290	srp54	100	75.781	Xenopus_tropicalis
ENSPMAG00000006078	-	88	93.228	ENSXCOG00000004658	srp54	96	93.228	Xiphophorus_couchianus
ENSPMAG00000006078	-	100	90.476	ENSXMAG00000018315	srp54	100	90.476	Xiphophorus_maculatus