EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000006212 (Gene tree)
Gene ID: -
Gene Symbol: pabpn1
Alias: -
Full Name: poly(A) binding protein%2C nuclear 1
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 12932 bases
Position: chrGL476592:622936-635867
Accession: ZDB-GENE-040426-2401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000006856	RRM_1	PF00076.22	1.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000006886	-	821	-	ENSPMAP00000006856	239 (aa)	-	S4RNS0

Gene Model

Click here to download ENSPMAG00000006212's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000006212's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000006212	pabpn1	84	76.355	ENSG00000100836	PABPN1	77	86.923	Homo_sapiens
ENSPMAG00000006212	pabpn1	99	65.041	ENSAPOG00000016425	pabpn1	79	75.806	Acanthochromis_polyacanthus
ENSPMAG00000006212	pabpn1	81	77.041	ENSAMEG00000007048	BCL2L2-PABPN1	75	87.943	Ailuropoda_melanoleuca
ENSPMAG00000006212	pabpn1	93	68.398	ENSACIG00000021744	pabpn1	73	87.500	Amphilophus_citrinellus
ENSPMAG00000006212	pabpn1	99	65.041	ENSAOCG00000015805	pabpn1	79	75.806	Amphiprion_ocellaris
ENSPMAG00000006212	pabpn1	99	65.041	ENSAPEG00000009623	pabpn1	79	75.806	Amphiprion_percula
ENSPMAG00000006212	pabpn1	99	65.041	ENSATEG00000020531	pabpn1	79	75.806	Anabas_testudineus
ENSPMAG00000006212	pabpn1	83	72.277	ENSACAG00000006185	-	65	72.043	Anolis_carolinensis
ENSPMAG00000006212	pabpn1	84	76.355	ENSANAG00000024513	-	53	86.486	Aotus_nancymaae
ENSPMAG00000006212	pabpn1	93	68.103	ENSACLG00000016374	pabpn1	65	74.074	Astatotilapia_calliptera
ENSPMAG00000006212	pabpn1	99	65.587	ENSAMXG00000000452	pabpn1	72	89.062	Astyanax_mexicanus
ENSPMAG00000006212	pabpn1	84	76.355	ENSBTAG00000006884	PABPN1	54	80.473	Bos_taurus
ENSPMAG00000006212	pabpn1	64	85.806	ENSBTAG00000050594	-	59	85.333	Bos_taurus
ENSPMAG00000006212	pabpn1	82	76.768	ENSBTAG00000053753	-	53	87.413	Bos_taurus
ENSPMAG00000006212	pabpn1	67	58.025	WBGene00003904	pabp-2	74	60.265	Caenorhabditis_elegans
ENSPMAG00000006212	pabpn1	84	76.355	ENSCJAG00000007960	-	66	75.000	Callithrix_jacchus
ENSPMAG00000006212	pabpn1	72	73.563	ENSCJAG00000004407	-	65	84.615	Callithrix_jacchus
ENSPMAG00000006212	pabpn1	84	76.355	ENSCAFG00000011482	PABPN1	54	77.778	Canis_familiaris
ENSPMAG00000006212	pabpn1	84	76.355	ENSCAFG00020007298	-	54	77.778	Canis_lupus_dingo
ENSPMAG00000006212	pabpn1	84	76.355	ENSCAFG00020006651	-	54	77.778	Canis_lupus_dingo
ENSPMAG00000006212	pabpn1	84	76.355	ENSCHIG00000012184	PABPN1	54	77.778	Capra_hircus
ENSPMAG00000006212	pabpn1	81	77.041	ENSTSYG00000033996	BCL2L2-PABPN1	73	86.923	Carlito_syrichta
ENSPMAG00000006212	pabpn1	61	75.172	ENSCAPG00000009461	-	73	88.235	Cavia_aperea
ENSPMAG00000006212	pabpn1	84	75.862	ENSCPOG00000025574	PABPN1	54	77.778	Cavia_porcellus
ENSPMAG00000006212	pabpn1	84	76.355	ENSCCAG00000033954	BCL2L2-PABPN1	66	75.000	Cebus_capucinus
ENSPMAG00000006212	pabpn1	84	76.355	ENSCATG00000038536	BCL2L2-PABPN1	66	75.000	Cercocebus_atys
ENSPMAG00000006212	pabpn1	66	74.522	ENSCLAG00000012423	PABPN1	59	55.612	Chinchilla_lanigera
ENSPMAG00000006212	pabpn1	84	75.369	ENSCSAG00000016036	PABPN1	54	76.608	Chlorocebus_sabaeus
ENSPMAG00000006212	pabpn1	87	68.571	ENSCHOG00000004798	BCL2L2-PABPN1	67	75.484	Choloepus_hoffmanni
ENSPMAG00000006212	pabpn1	72	75.862	ENSCPBG00000026060	-	73	86.923	Chrysemys_picta_bellii
ENSPMAG00000006212	pabpn1	92	60.181	ENSCING00000012468	-	71	65.663	Ciona_intestinalis
ENSPMAG00000006212	pabpn1	77	61.622	ENSCSAVG00000002001	-	77	70.000	Ciona_savignyi
ENSPMAG00000006212	pabpn1	84	66.832	ENSCANG00000030980	-	51	73.793	Colobus_angolensis_palliatus
ENSPMAG00000006212	pabpn1	81	77.041	ENSCANG00000009750	BCL2L2-PABPN1	73	86.923	Colobus_angolensis_palliatus
ENSPMAG00000006212	pabpn1	84	76.355	ENSCGRG00001019696	Pabpn1	73	86.923	Cricetulus_griseus_chok1gshd
ENSPMAG00000006212	pabpn1	60	88.356	ENSCGRG00000011102	Pabpn1	88	87.943	Cricetulus_griseus_crigri
ENSPMAG00000006212	pabpn1	99	65.041	ENSCSEG00000008774	pabpn1	80	75.269	Cynoglossus_semilaevis
ENSPMAG00000006212	pabpn1	99	69.295	ENSCVAG00000003152	pabpn1	79	75.269	Cyprinodon_variegatus
ENSPMAG00000006212	pabpn1	99	64.898	ENSDARG00000045373	pabpn1	83	75.676	Danio_rerio
ENSPMAG00000006212	pabpn1	71	57.225	ENSDARG00000087996	pabpn1l	73	66.949	Danio_rerio
ENSPMAG00000006212	pabpn1	84	76.355	ENSDNOG00000023682	PABPN1	54	77.778	Dasypus_novemcinctus
ENSPMAG00000006212	pabpn1	55	78.947	ENSDORG00000023928	-	90	79.231	Dipodomys_ordii
ENSPMAG00000006212	pabpn1	84	75.369	ENSDORG00000028966	-	54	77.778	Dipodomys_ordii
ENSPMAG00000006212	pabpn1	100	51.852	FBgn0005648	Pabp2	63	69.014	Drosophila_melanogaster
ENSPMAG00000006212	pabpn1	100	73.554	ENSEBUG00000002322	pabpn1	79	79.891	Eptatretus_burgeri
ENSPMAG00000006212	pabpn1	84	76.355	ENSEASG00005011716	PABPN1	54	77.778	Equus_asinus_asinus
ENSPMAG00000006212	pabpn1	83	76.119	ENSECAG00000011652	PABPN1	56	77.778	Equus_caballus
ENSPMAG00000006212	pabpn1	84	73.529	ENSEEUG00000012973	-	51	84.459	Erinaceus_europaeus
ENSPMAG00000006212	pabpn1	96	67.364	ENSELUG00000022654	pabpn1	79	76.316	Esox_lucius
ENSPMAG00000006212	pabpn1	84	76.355	ENSFCAG00000031922	PABPN1	54	77.778	Felis_catus
ENSPMAG00000006212	pabpn1	72	74.138	ENSFDAG00000018381	BCL2L2-PABPN1	73	86.154	Fukomys_damarensis
ENSPMAG00000006212	pabpn1	99	68.313	ENSFHEG00000007215	pabpn1	79	74.194	Fundulus_heteroclitus
ENSPMAG00000006212	pabpn1	94	69.298	ENSGMOG00000003922	pabpn1	64	76.216	Gadus_morhua
ENSPMAG00000006212	pabpn1	77	75.789	ENSGAFG00000017099	pabpn1	78	75.269	Gambusia_affinis
ENSPMAG00000006212	pabpn1	79	75.510	ENSGACG00000002167	pabpn1	75	75.132	Gasterosteus_aculeatus
ENSPMAG00000006212	pabpn1	84	76.355	ENSGGOG00000022683	-	66	75.000	Gorilla_gorilla
ENSPMAG00000006212	pabpn1	85	64.356	ENSGGOG00000039675	-	53	72.109	Gorilla_gorilla
ENSPMAG00000006212	pabpn1	83	66.000	ENSGGOG00000025919	-	72	75.573	Gorilla_gorilla
ENSPMAG00000006212	pabpn1	99	65.289	ENSHBUG00000019523	pabpn1	79	75.806	Haplochromis_burtoni
ENSPMAG00000006212	pabpn1	84	75.862	ENSHGLG00000002927	-	89	87.234	Heterocephalus_glaber_female
ENSPMAG00000006212	pabpn1	72	58.046	ENSHGLG00000009842	-	74	70.769	Heterocephalus_glaber_female
ENSPMAG00000006212	pabpn1	93	61.778	ENSHGLG00000018588	-	62	71.930	Heterocephalus_glaber_female
ENSPMAG00000006212	pabpn1	76	77.174	ENSHGLG00100006673	-	89	87.234	Heterocephalus_glaber_male
ENSPMAG00000006212	pabpn1	93	61.778	ENSHGLG00100015565	-	63	71.930	Heterocephalus_glaber_male
ENSPMAG00000006212	pabpn1	72	66.092	ENSHGLG00100018935	-	72	81.538	Heterocephalus_glaber_male
ENSPMAG00000006212	pabpn1	99	64.490	ENSHCOG00000004655	pabpn1	79	76.344	Hippocampus_comes
ENSPMAG00000006212	pabpn1	99	64.435	ENSIPUG00000000180	-	78	73.626	Ictalurus_punctatus
ENSPMAG00000006212	pabpn1	99	65.854	ENSIPUG00000008085	PABPN1	79	76.344	Ictalurus_punctatus
ENSPMAG00000006212	pabpn1	72	75.287	ENSSTOG00000029847	BCL2L2-PABPN1	73	86.923	Ictidomys_tridecemlineatus
ENSPMAG00000006212	pabpn1	72	75.287	ENSJJAG00000023507	Gm20521	73	86.923	Jaculus_jaculus
ENSPMAG00000006212	pabpn1	99	69.547	ENSKMAG00000018748	pabpn1	79	75.269	Kryptolebias_marmoratus
ENSPMAG00000006212	pabpn1	99	65.041	ENSLBEG00000027266	pabpn1	79	75.806	Labrus_bergylta
ENSPMAG00000006212	pabpn1	76	74.595	ENSLACG00000000646	pabpn1	78	72.778	Latimeria_chalumnae
ENSPMAG00000006212	pabpn1	94	69.957	ENSLOCG00000000796	pabpn1	67	76.757	Lepisosteus_oculatus
ENSPMAG00000006212	pabpn1	92	61.712	ENSLOCG00000004694	pabpn1l	78	68.072	Lepisosteus_oculatus
ENSPMAG00000006212	pabpn1	66	75.316	ENSLAFG00000031227	-	68	89.320	Loxodonta_africana
ENSPMAG00000006212	pabpn1	62	70.946	ENSMFAG00000031355	-	65	84.946	Macaca_fascicularis
ENSPMAG00000006212	pabpn1	81	77.041	ENSMFAG00000032183	BCL2L2-PABPN1	73	86.923	Macaca_fascicularis
ENSPMAG00000006212	pabpn1	100	65.560	ENSMMUG00000014747	BCL2L2-PABPN1	67	89.796	Macaca_mulatta
ENSPMAG00000006212	pabpn1	80	64.767	ENSMNEG00000035750	-	65	84.946	Macaca_nemestrina
ENSPMAG00000006212	pabpn1	84	76.355	ENSMNEG00000045065	BCL2L2-PABPN1	66	75.000	Macaca_nemestrina
ENSPMAG00000006212	pabpn1	81	77.041	ENSMLEG00000043862	BCL2L2-PABPN1	73	86.923	Mandrillus_leucophaeus
ENSPMAG00000006212	pabpn1	72	63.006	ENSMLEG00000034623	-	67	86.022	Mandrillus_leucophaeus
ENSPMAG00000006212	pabpn1	94	68.670	ENSMAMG00000007979	pabpn1	65	75.135	Mastacembelus_armatus
ENSPMAG00000006212	pabpn1	94	69.565	ENSMZEG00005011904	pabpn1	64	75.806	Maylandia_zebra
ENSPMAG00000006212	pabpn1	84	76.355	ENSMAUG00000007383	Gm20521	55	77.778	Mesocricetus_auratus
ENSPMAG00000006212	pabpn1	84	76.355	ENSMICG00000010002	BCL2L2-PABPN1	66	75.135	Microcebus_murinus
ENSPMAG00000006212	pabpn1	84	76.355	ENSMOCG00000018557	Gm20521	86	87.943	Microtus_ochrogaster
ENSPMAG00000006212	pabpn1	99	65.041	ENSMMOG00000005405	pabpn1	79	75.806	Mola_mola
ENSPMAG00000006212	pabpn1	83	75.124	ENSMODG00000004535	-	54	78.363	Monodelphis_domestica
ENSPMAG00000006212	pabpn1	94	69.231	ENSMALG00000019612	pabpn1	64	75.806	Monopterus_albus
ENSPMAG00000006212	pabpn1	84	75.862	MGP_CAROLIEiJ_G0019277	Pabpn1	86	87.943	Mus_caroli
ENSPMAG00000006212	pabpn1	84	76.355	ENSMUSG00000022194	Pabpn1	86	87.943	Mus_musculus
ENSPMAG00000006212	pabpn1	84	76.355	MGP_PahariEiJ_G0030295	Pabpn1	100	95.238	Mus_pahari
ENSPMAG00000006212	pabpn1	84	76.355	MGP_SPRETEiJ_G0020166	Pabpn1	86	87.943	Mus_spretus
ENSPMAG00000006212	pabpn1	67	75.926	ENSMPUG00000006775	-	77	86.923	Mustela_putorius_furo
ENSPMAG00000006212	pabpn1	84	73.399	ENSMLUG00000028677	-	67	72.340	Myotis_lucifugus
ENSPMAG00000006212	pabpn1	74	75.843	ENSMLUG00000012452	-	54	76.023	Myotis_lucifugus
ENSPMAG00000006212	pabpn1	81	75.000	ENSMLUG00000003800	-	75	85.816	Myotis_lucifugus
ENSPMAG00000006212	pabpn1	94	69.565	ENSNBRG00000023955	pabpn1	73	87.500	Neolamprologus_brichardi
ENSPMAG00000006212	pabpn1	65	56.129	ENSNLEG00000035292	-	67	69.000	Nomascus_leucogenys
ENSPMAG00000006212	pabpn1	85	65.854	ENSNLEG00000030598	-	70	67.956	Nomascus_leucogenys
ENSPMAG00000006212	pabpn1	84	76.355	ENSNLEG00000015007	-	59	77.778	Nomascus_leucogenys
ENSPMAG00000006212	pabpn1	84	75.862	ENSODEG00000002083	BCL2L2-PABPN1	54	77.778	Octodon_degus
ENSPMAG00000006212	pabpn1	77	64.324	ENSODEG00000011555	-	70	74.615	Octodon_degus
ENSPMAG00000006212	pabpn1	84	70.149	ENSODEG00000003739	-	57	71.856	Octodon_degus
ENSPMAG00000006212	pabpn1	94	69.565	ENSONIG00000008112	pabpn1	64	75.806	Oreochromis_niloticus
ENSPMAG00000006212	pabpn1	64	75.163	ENSOANG00000009218	-	67	90.816	Ornithorhynchus_anatinus
ENSPMAG00000006212	pabpn1	84	76.355	ENSOCUG00000016174	PABPN1	60	77.778	Oryctolagus_cuniculus
ENSPMAG00000006212	pabpn1	97	66.805	ENSORLG00000027900	pabpn1	78	75.269	Oryzias_latipes
ENSPMAG00000006212	pabpn1	87	71.628	ENSORLG00020004681	pabpn1	63	75.269	Oryzias_latipes_hni
ENSPMAG00000006212	pabpn1	99	66.802	ENSORLG00015000018	pabpn1	79	75.269	Oryzias_latipes_hsok
ENSPMAG00000006212	pabpn1	98	65.984	ENSOMEG00000016618	pabpn1	68	75.269	Oryzias_melastigma
ENSPMAG00000006212	pabpn1	84	76.355	ENSOGAG00000008710	PABPN1	54	77.778	Otolemur_garnettii
ENSPMAG00000006212	pabpn1	72	62.147	ENSPPAG00000039421	-	70	75.000	Pan_paniscus
ENSPMAG00000006212	pabpn1	81	77.041	ENSPPAG00000028984	BCL2L2-PABPN1	77	86.923	Pan_paniscus
ENSPMAG00000006212	pabpn1	84	76.355	ENSPPRG00000010567	PABPN1	54	77.778	Panthera_pardus
ENSPMAG00000006212	pabpn1	72	75.287	ENSPTIG00000001063	BCL2L2-PABPN1	73	86.923	Panthera_tigris_altaica
ENSPMAG00000006212	pabpn1	85	61.836	ENSPTRG00000047273	-	53	71.429	Pan_troglodytes
ENSPMAG00000006212	pabpn1	84	76.355	ENSPTRG00000006167	BCL2L2	66	75.000	Pan_troglodytes
ENSPMAG00000006212	pabpn1	83	63.861	ENSPANG00000023326	-	65	84.946	Papio_anubis
ENSPMAG00000006212	pabpn1	84	76.355	ENSPANG00000021100	BCL2L2-PABPN1	66	75.000	Papio_anubis
ENSPMAG00000006212	pabpn1	69	69.512	ENSPKIG00000008340	pabpn1l	73	71.622	Paramormyrops_kingsleyae
ENSPMAG00000006212	pabpn1	99	66.270	ENSPKIG00000018052	pabpn1	79	77.419	Paramormyrops_kingsleyae
ENSPMAG00000006212	pabpn1	94	69.957	ENSPKIG00000008144	-	64	76.757	Paramormyrops_kingsleyae
ENSPMAG00000006212	pabpn1	51	77.236	ENSPSIG00000011959	-	75	81.553	Pelodiscus_sinensis
ENSPMAG00000006212	pabpn1	94	68.376	ENSPMGG00000022027	pabpn1	67	74.731	Periophthalmus_magnuspinnatus
ENSPMAG00000006212	pabpn1	84	76.355	ENSPEMG00000008332	Gm20521	85	87.943	Peromyscus_maniculatus_bairdii
ENSPMAG00000006212	pabpn1	84	75.000	ENSPCIG00000027751	-	54	78.363	Phascolarctos_cinereus
ENSPMAG00000006212	pabpn1	78	75.521	ENSPFOG00000010351	pabpn1	78	75.000	Poecilia_formosa
ENSPMAG00000006212	pabpn1	94	69.130	ENSPLAG00000022696	pabpn1	64	75.269	Poecilia_latipinna
ENSPMAG00000006212	pabpn1	77	75.789	ENSPMEG00000020856	pabpn1	78	75.269	Poecilia_mexicana
ENSPMAG00000006212	pabpn1	94	68.996	ENSPREG00000011278	pabpn1	78	75.269	Poecilia_reticulata
ENSPMAG00000006212	pabpn1	79	76.963	ENSPPYG00000005663	PABPN1	59	77.778	Pongo_abelii
ENSPMAG00000006212	pabpn1	79	63.021	ENSPCAG00000005902	PABPN1	57	62.428	Procavia_capensis
ENSPMAG00000006212	pabpn1	84	76.355	ENSPCOG00000028047	BCL2L2-PABPN1	66	75.135	Propithecus_coquereli
ENSPMAG00000006212	pabpn1	99	65.289	ENSPNYG00000013182	pabpn1	79	75.806	Pundamilia_nyererei
ENSPMAG00000006212	pabpn1	99	66.260	ENSPNAG00000023526	pabpn1	79	76.882	Pygocentrus_nattereri
ENSPMAG00000006212	pabpn1	83	62.312	ENSPNAG00000021666	pabpn1l	72	72.109	Pygocentrus_nattereri
ENSPMAG00000006212	pabpn1	84	76.355	ENSRNOG00000042195	Pabpn1	55	77.778	Rattus_norvegicus
ENSPMAG00000006212	pabpn1	84	66.169	ENSRBIG00000042811	-	69	69.231	Rhinopithecus_bieti
ENSPMAG00000006212	pabpn1	83	68.000	ENSRBIG00000039547	-	51	74.825	Rhinopithecus_bieti
ENSPMAG00000006212	pabpn1	76	77.717	ENSRROG00000045535	BCL2L2-PABPN1	73	86.923	Rhinopithecus_roxellana
ENSPMAG00000006212	pabpn1	83	68.000	ENSRROG00000040409	-	51	74.825	Rhinopithecus_roxellana
ENSPMAG00000006212	pabpn1	81	72.249	ENSSBOG00000026930	BCL2L2-PABPN1	77	86.923	Saimiri_boliviensis_boliviensis
ENSPMAG00000006212	pabpn1	94	58.952	ENSSHAG00000007707	-	70	63.584	Sarcophilus_harrisii
ENSPMAG00000006212	pabpn1	81	76.531	ENSSHAG00000014841	-	65	88.652	Sarcophilus_harrisii
ENSPMAG00000006212	pabpn1	99	67.623	ENSSFOG00015014718	pabpn1	79	76.882	Scleropages_formosus
ENSPMAG00000006212	pabpn1	89	70.968	ENSSFOG00015012565	pabpn1	72	81.988	Scleropages_formosus
ENSPMAG00000006212	pabpn1	64	69.737	ENSSFOG00015015833	pabpn1l	68	70.748	Scleropages_formosus
ENSPMAG00000006212	pabpn1	99	65.041	ENSSMAG00000020157	pabpn1	79	75.806	Scophthalmus_maximus
ENSPMAG00000006212	pabpn1	94	69.231	ENSSDUG00000020582	pabpn1	64	75.806	Seriola_dumerili
ENSPMAG00000006212	pabpn1	99	65.041	ENSSLDG00000007118	pabpn1	79	75.806	Seriola_lalandi_dorsalis
ENSPMAG00000006212	pabpn1	72	76.437	ENSSPUG00000018308	-	73	87.692	Sphenodon_punctatus
ENSPMAG00000006212	pabpn1	99	64.777	ENSSPAG00000021658	pabpn1	79	75.806	Stegastes_partitus
ENSPMAG00000006212	pabpn1	84	76.355	ENSSSCG00000002023	PABPN1	54	77.778	Sus_scrofa
ENSPMAG00000006212	pabpn1	64	70.513	ENSSSCG00000034805	-	61	70.199	Sus_scrofa
ENSPMAG00000006212	pabpn1	99	66.667	ENSTRUG00000023664	pabpn1	79	76.344	Takifugu_rubripes
ENSPMAG00000006212	pabpn1	94	68.696	ENSTNIG00000005369	pabpn1	77	79.290	Tetraodon_nigroviridis
ENSPMAG00000006212	pabpn1	84	76.355	ENSUAMG00000024460	PABPN1	54	77.778	Ursus_americanus
ENSPMAG00000006212	pabpn1	92	70.270	ENSVVUG00000019912	BCL2L2-PABPN1	65	77.711	Vulpes_vulpes
ENSPMAG00000006212	pabpn1	84	73.399	ENSXETG00000014597	pabpn1	50	87.162	Xenopus_tropicalis
ENSPMAG00000006212	pabpn1	77	75.789	ENSXMAG00000006196	pabpn1	78	75.269	Xiphophorus_maculatus