EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000007139 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 9848 bases
Position: chrGL478966:203063-212910
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000007871	PRP21_like_P	PF12230.8	2.1e-53	1	1
ENSPMAP00000007871	Surp	PF01805.20	5.2e-44	1	2
ENSPMAP00000007871	Surp	PF01805.20	5.2e-44	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000007906	-	1755	-	ENSPMAP00000007871	585 (aa)	-	S4RRN5

Gene Model

Click here to download ENSPMAG00000007139's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000007139's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000007139	-	90	77.757	ENSG00000099995	SF3A1	100	57.143	Homo_sapiens
ENSPMAG00000007139	-	100	73.719	ENSAPOG00000020465	sf3a1	69	78.467	Acanthochromis_polyacanthus
ENSPMAG00000007139	-	89	79.434	ENSAMEG00000007737	SF3A1	69	77.577	Ailuropoda_melanoleuca
ENSPMAG00000007139	-	100	71.901	ENSACIG00000020672	sf3a1	69	77.737	Amphilophus_citrinellus
ENSPMAG00000007139	-	100	73.719	ENSAOCG00000003060	sf3a1	69	78.467	Amphiprion_ocellaris
ENSPMAG00000007139	-	100	73.719	ENSAPEG00000010735	sf3a1	69	78.467	Amphiprion_percula
ENSPMAG00000007139	-	99	73.469	ENSATEG00000021201	sf3a1	64	81.128	Anabas_testudineus
ENSPMAG00000007139	-	87	79.845	ENSAPLG00000009057	SF3A1	66	80.545	Anas_platyrhynchos
ENSPMAG00000007139	-	93	77.636	ENSACAG00000009415	SF3A1	68	77.372	Anolis_carolinensis
ENSPMAG00000007139	-	90	77.757	ENSANAG00000032045	SF3A1	69	77.858	Aotus_nancymaae
ENSPMAG00000007139	-	93	76.417	ENSACLG00000012622	sf3a1	69	77.514	Astatotilapia_calliptera
ENSPMAG00000007139	-	91	78.403	ENSAMXG00000005382	sf3a1	65	82.524	Astyanax_mexicanus
ENSPMAG00000007139	-	90	77.944	ENSBTAG00000003390	SF3A1	69	78.221	Bos_taurus
ENSPMAG00000007139	-	88	44.530	WBGene00004188	prp-21	71	43.665	Caenorhabditis_elegans
ENSPMAG00000007139	-	90	77.757	ENSCJAG00000010370	SF3A1	69	77.858	Callithrix_jacchus
ENSPMAG00000007139	-	90	77.757	ENSCAFG00000012559	SF3A1	69	78.040	Canis_familiaris
ENSPMAG00000007139	-	90	77.757	ENSCAFG00020000838	SF3A1	69	78.040	Canis_lupus_dingo
ENSPMAG00000007139	-	90	78.113	ENSCHIG00000018642	SF3A1	69	78.221	Capra_hircus
ENSPMAG00000007139	-	90	77.757	ENSTSYG00000004739	SF3A1	69	77.858	Carlito_syrichta
ENSPMAG00000007139	-	89	63.931	ENSCAPG00000015414	SF3A1	64	65.166	Cavia_aperea
ENSPMAG00000007139	-	90	79.323	ENSCPOG00000014589	SF3A1	69	77.677	Cavia_porcellus
ENSPMAG00000007139	-	90	77.757	ENSCCAG00000032006	SF3A1	69	77.858	Cebus_capucinus
ENSPMAG00000007139	-	90	79.065	ENSCATG00000029241	SF3A1	69	78.040	Cercocebus_atys
ENSPMAG00000007139	-	90	79.511	ENSCLAG00000006508	SF3A1	69	77.858	Chinchilla_lanigera
ENSPMAG00000007139	-	90	77.757	ENSCSAG00000009470	SF3A1	69	78.040	Chlorocebus_sabaeus
ENSPMAG00000007139	-	93	78.689	ENSCPBG00000007595	SF3A1	69	77.148	Chrysemys_picta_bellii
ENSPMAG00000007139	-	86	56.582	ENSCING00000008526	-	65	56.673	Ciona_intestinalis
ENSPMAG00000007139	-	94	52.557	ENSCSAVG00000005608	-	73	54.389	Ciona_savignyi
ENSPMAG00000007139	-	90	77.757	ENSCANG00000033564	SF3A1	69	78.040	Colobus_angolensis_palliatus
ENSPMAG00000007139	-	87	81.008	ENSCGRG00001008933	Sf3a1	69	78.040	Cricetulus_griseus_chok1gshd
ENSPMAG00000007139	-	87	81.008	ENSCGRG00000006127	Sf3a1	69	78.040	Cricetulus_griseus_crigri
ENSPMAG00000007139	-	95	75.000	ENSCSEG00000010792	sf3a1	69	76.417	Cynoglossus_semilaevis
ENSPMAG00000007139	-	100	71.854	ENSCVAG00000004560	sf3a1	71	74.250	Cyprinodon_variegatus
ENSPMAG00000007139	-	93	77.431	ENSDARG00000041887	sf3a1	100	71.751	Danio_rerio
ENSPMAG00000007139	-	90	77.757	ENSDNOG00000010629	SF3A1	69	77.858	Dasypus_novemcinctus
ENSPMAG00000007139	-	90	79.065	ENSDORG00000005613	Sf3a1	69	77.858	Dipodomys_ordii
ENSPMAG00000007139	-	88	59.091	FBgn0266917	Sf3a1	68	59.489	Drosophila_melanogaster
ENSPMAG00000007139	-	87	78.530	ENSETEG00000017194	SF3A1	78	76.503	Echinops_telfairi
ENSPMAG00000007139	-	93	71.306	ENSEBUG00000001285	sf3a1	64	76.128	Eptatretus_burgeri
ENSPMAG00000007139	-	90	77.570	ENSEASG00005010254	SF3A1	69	77.677	Equus_asinus_asinus
ENSPMAG00000007139	-	90	77.570	ENSECAG00000023962	SF3A1	69	77.677	Equus_caballus
ENSPMAG00000007139	-	83	75.407	ENSEEUG00000003159	SF3A1	69	75.051	Erinaceus_europaeus
ENSPMAG00000007139	-	100	73.623	ENSELUG00000022578	sf3a1	71	76.993	Esox_lucius
ENSPMAG00000007139	-	90	77.757	ENSFCAG00000011932	SF3A1	69	78.040	Felis_catus
ENSPMAG00000007139	-	87	81.359	ENSFALG00000006944	SF3A1	82	77.372	Ficedula_albicollis
ENSPMAG00000007139	-	90	79.511	ENSFDAG00000009560	SF3A1	69	77.858	Fukomys_damarensis
ENSPMAG00000007139	-	93	78.102	ENSFHEG00000010866	sf3a1	69	78.102	Fundulus_heteroclitus
ENSPMAG00000007139	-	93	77.473	ENSGMOG00000016024	sf3a1	69	76.740	Gadus_morhua
ENSPMAG00000007139	-	87	80.000	ENSGALG00000007937	SF3A1	69	77.372	Gallus_gallus
ENSPMAG00000007139	-	93	77.818	ENSGAFG00000009111	sf3a1	69	77.737	Gambusia_affinis
ENSPMAG00000007139	-	100	72.697	ENSGACG00000011893	sf3a1	86	77.532	Gasterosteus_aculeatus
ENSPMAG00000007139	-	93	78.506	ENSGAGG00000000762	SF3A1	72	77.148	Gopherus_agassizii
ENSPMAG00000007139	-	90	77.757	ENSGGOG00000012631	SF3A1	69	78.040	Gorilla_gorilla
ENSPMAG00000007139	-	100	71.689	ENSHBUG00000015795	sf3a1	69	77.514	Haplochromis_burtoni
ENSPMAG00000007139	-	90	79.511	ENSHGLG00000007907	SF3A1	69	77.858	Heterocephalus_glaber_female
ENSPMAG00000007139	-	90	79.511	ENSHGLG00100013799	SF3A1	69	77.858	Heterocephalus_glaber_male
ENSPMAG00000007139	-	100	72.139	ENSHCOG00000015423	sf3a1	68	76.147	Hippocampus_comes
ENSPMAG00000007139	-	97	76.420	ENSIPUG00000002470	sf3a1	67	81.870	Ictalurus_punctatus
ENSPMAG00000007139	-	90	77.757	ENSSTOG00000013892	SF3A1	69	77.858	Ictidomys_tridecemlineatus
ENSPMAG00000007139	-	89	79.434	ENSJJAG00000022566	Sf3a1	69	77.717	Jaculus_jaculus
ENSPMAG00000007139	-	100	74.324	ENSKMAG00000002400	sf3a1	69	77.555	Kryptolebias_marmoratus
ENSPMAG00000007139	-	100	72.727	ENSLBEG00000022974	sf3a1	71	75.311	Labrus_bergylta
ENSPMAG00000007139	-	93	77.697	ENSLACG00000003565	SF3A1	69	76.867	Latimeria_chalumnae
ENSPMAG00000007139	-	93	76.036	ENSLOCG00000008251	sf3a1	68	77.091	Lepisosteus_oculatus
ENSPMAG00000007139	-	90	79.439	ENSLAFG00000000448	SF3A1	69	78.040	Loxodonta_africana
ENSPMAG00000007139	-	92	55.617	ENSLAFG00000026032	-	64	56.863	Loxodonta_africana
ENSPMAG00000007139	-	90	79.252	ENSMFAG00000031979	SF3A1	69	77.858	Macaca_fascicularis
ENSPMAG00000007139	-	90	79.252	ENSMMUG00000005547	SF3A1	69	77.858	Macaca_mulatta
ENSPMAG00000007139	-	90	79.065	ENSMNEG00000037229	SF3A1	69	77.677	Macaca_nemestrina
ENSPMAG00000007139	-	90	77.757	ENSMLEG00000041908	SF3A1	69	78.040	Mandrillus_leucophaeus
ENSPMAG00000007139	-	95	75.176	ENSMAMG00000006460	sf3a1	64	81.712	Mastacembelus_armatus
ENSPMAG00000007139	-	93	76.417	ENSMZEG00005009633	sf3a1	69	77.514	Maylandia_zebra
ENSPMAG00000007139	-	87	80.000	ENSMGAG00000001330	SF3A1	66	80.702	Meleagris_gallopavo
ENSPMAG00000007139	-	83	74.848	ENSMAUG00000020317	Sf3a1	62	74.490	Mesocricetus_auratus
ENSPMAG00000007139	-	90	77.903	ENSMICG00000010038	SF3A1	69	78.182	Microcebus_murinus
ENSPMAG00000007139	-	90	79.252	ENSMOCG00000008438	Sf3a1	69	78.040	Microtus_ochrogaster
ENSPMAG00000007139	-	100	69.333	ENSMMOG00000015588	sf3a1	67	74.954	Mola_mola
ENSPMAG00000007139	-	89	80.000	ENSMODG00000009270	SF3A1	69	76.951	Monodelphis_domestica
ENSPMAG00000007139	-	95	75.218	ENSMALG00000000148	sf3a1	66	80.204	Monopterus_albus
ENSPMAG00000007139	-	90	79.213	MGP_CAROLIEiJ_G0016029	Sf3a1	69	76.407	Mus_caroli
ENSPMAG00000007139	-	90	79.213	ENSMUSG00000002129	Sf3a1	69	76.407	Mus_musculus
ENSPMAG00000007139	-	90	77.612	MGP_PahariEiJ_G0016862	Sf3a1	69	77.677	Mus_pahari
ENSPMAG00000007139	-	90	79.213	MGP_SPRETEiJ_G0016870	Sf3a1	69	76.407	Mus_spretus
ENSPMAG00000007139	-	90	79.439	ENSMPUG00000013144	SF3A1	69	77.858	Mustela_putorius_furo
ENSPMAG00000007139	-	90	78.879	ENSMLUG00000002139	SF3A1	69	77.677	Myotis_lucifugus
ENSPMAG00000007139	-	90	77.570	ENSNGAG00000016977	Sf3a1	69	77.677	Nannospalax_galili
ENSPMAG00000007139	-	100	71.617	ENSNBRG00000016642	sf3a1	69	77.697	Neolamprologus_brichardi
ENSPMAG00000007139	-	90	77.757	ENSNLEG00000003686	SF3A1	69	78.040	Nomascus_leucogenys
ENSPMAG00000007139	-	89	72.106	ENSMEUG00000008741	SF3A1	72	70.417	Notamacropus_eugenii
ENSPMAG00000007139	-	89	79.507	ENSOPRG00000016636	SF3A1	69	77.495	Ochotona_princeps
ENSPMAG00000007139	-	89	79.886	ENSODEG00000002571	SF3A1	69	77.858	Octodon_degus
ENSPMAG00000007139	-	100	73.013	ENSONIG00000010848	sf3a1	69	77.331	Oreochromis_niloticus
ENSPMAG00000007139	-	89	79.245	ENSOCUG00000007633	SF3A1	69	77.677	Oryctolagus_cuniculus
ENSPMAG00000007139	-	93	76.234	ENSORLG00000013050	sf3a1	71	77.331	Oryzias_latipes
ENSPMAG00000007139	-	100	72.605	ENSORLG00020003236	sf3a1	68	77.148	Oryzias_latipes_hni
ENSPMAG00000007139	-	93	76.234	ENSORLG00015017411	sf3a1	69	77.273	Oryzias_latipes_hsok
ENSPMAG00000007139	-	100	71.096	ENSOMEG00000013362	sf3a1	69	76.782	Oryzias_melastigma
ENSPMAG00000007139	-	90	79.065	ENSOGAG00000012931	SF3A1	69	78.040	Otolemur_garnettii
ENSPMAG00000007139	-	90	77.196	ENSOARG00000006849	SF3A1	69	77.495	Ovis_aries
ENSPMAG00000007139	-	90	79.065	ENSPPAG00000041790	SF3A1	69	78.040	Pan_paniscus
ENSPMAG00000007139	-	90	77.757	ENSPPRG00000004391	SF3A1	69	78.040	Panthera_pardus
ENSPMAG00000007139	-	89	79.434	ENSPTIG00000000844	SF3A1	66	81.128	Panthera_tigris_altaica
ENSPMAG00000007139	-	90	77.757	ENSPTRG00000014240	SF3A1	69	78.040	Pan_troglodytes
ENSPMAG00000007139	-	90	77.757	ENSPANG00000020772	SF3A1	69	78.040	Papio_anubis
ENSPMAG00000007139	-	88	80.455	ENSPSIG00000012803	SF3A1	79	80.702	Pelodiscus_sinensis
ENSPMAG00000007139	-	87	80.273	ENSPMGG00000023096	sf3a1	67	79.961	Periophthalmus_magnuspinnatus
ENSPMAG00000007139	-	87	80.539	ENSPEMG00000009494	Sf3a1	69	78.040	Peromyscus_maniculatus_bairdii
ENSPMAG00000007139	-	89	79.623	ENSPCIG00000022692	SF3A1	64	81.128	Phascolarctos_cinereus
ENSPMAG00000007139	-	83	73.511	ENSPFOG00000016768	sf3a1	62	73.511	Poecilia_formosa
ENSPMAG00000007139	-	93	78.102	ENSPLAG00000017268	sf3a1	69	77.737	Poecilia_latipinna
ENSPMAG00000007139	-	72	81.324	ENSPMEG00000019811	sf3a1	62	81.324	Poecilia_mexicana
ENSPMAG00000007139	-	100	73.179	ENSPREG00000010347	sf3a1	71	75.000	Poecilia_reticulata
ENSPMAG00000007139	-	90	77.757	ENSPPYG00000011707	SF3A1	69	78.040	Pongo_abelii
ENSPMAG00000007139	-	90	77.903	ENSPCOG00000026630	SF3A1	69	78.000	Propithecus_coquereli
ENSPMAG00000007139	-	85	77.470	ENSPVAG00000017719	SF3A1	63	78.529	Pteropus_vampyrus
ENSPMAG00000007139	-	100	71.689	ENSPNYG00000018706	sf3a1	69	77.697	Pundamilia_nyererei
ENSPMAG00000007139	-	91	78.584	ENSPNAG00000003721	sf3a1	65	81.553	Pygocentrus_nattereri
ENSPMAG00000007139	-	89	79.886	ENSRNOG00000005218	Sf3a1	64	79.767	Rattus_norvegicus
ENSPMAG00000007139	-	90	77.757	ENSRBIG00000032167	SF3A1	69	78.040	Rhinopithecus_bieti
ENSPMAG00000007139	-	90	79.065	ENSRROG00000044908	SF3A1	75	78.040	Rhinopithecus_roxellana
ENSPMAG00000007139	-	83	78.340	ENSSBOG00000021960	SF3A1	64	80.244	Saimiri_boliviensis_boliviensis
ENSPMAG00000007139	-	89	76.604	ENSSHAG00000003666	SF3A1	65	77.821	Sarcophilus_harrisii
ENSPMAG00000007139	-	93	78.261	ENSSFOG00015004579	sf3a1	69	77.636	Scleropages_formosus
ENSPMAG00000007139	-	100	70.903	ENSSMAG00000004275	sf3a1	69	76.514	Scophthalmus_maximus
ENSPMAG00000007139	-	100	72.020	ENSSDUG00000022219	sf3a1	69	77.148	Seriola_dumerili
ENSPMAG00000007139	-	100	72.020	ENSSLDG00000012642	sf3a1	69	77.148	Seriola_lalandi_dorsalis
ENSPMAG00000007139	-	89	74.906	ENSSARG00000005960	SF3A1	66	75.875	Sorex_araneus
ENSPMAG00000007139	-	87	82.101	ENSSPUG00000018863	SF3A1	68	78.611	Sphenodon_punctatus
ENSPMAG00000007139	-	100	73.344	ENSSPAG00000011856	sf3a1	69	77.879	Stegastes_partitus
ENSPMAG00000007139	-	90	79.626	ENSSSCG00000010002	SF3A1	79	78.040	Sus_scrofa
ENSPMAG00000007139	-	87	81.359	ENSTGUG00000010547	SF3A1	66	81.871	Taeniopygia_guttata
ENSPMAG00000007139	-	95	77.639	ENSTRUG00000006118	sf3a1	68	77.941	Takifugu_rubripes
ENSPMAG00000007139	-	90	75.514	ENSTBEG00000012771	SF3A1	69	73.503	Tupaia_belangeri
ENSPMAG00000007139	-	90	78.358	ENSTTRG00000001535	SF3A1	69	77.536	Tursiops_truncatus
ENSPMAG00000007139	-	93	76.354	ENSUAMG00000006750	SF3A1	69	78.040	Ursus_americanus
ENSPMAG00000007139	-	99	72.591	ENSUMAG00000016665	SF3A1	75	81.128	Ursus_maritimus
ENSPMAG00000007139	-	90	77.757	ENSVVUG00000003075	SF3A1	69	78.040	Vulpes_vulpes
ENSPMAG00000007139	-	100	71.476	ENSXETG00000016144	sf3a1	96	77.016	Xenopus_tropicalis
ENSPMAG00000007139	-	93	77.920	ENSXCOG00000015653	sf3a1	69	77.555	Xiphophorus_couchianus
ENSPMAG00000007139	-	93	78.102	ENSXMAG00000002753	sf3a1	70	77.737	Xiphophorus_maculatus