EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000007705 (Gene tree)
Gene ID: -
Gene Symbol: smndc1
Alias: -
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 5519 bases
Position: chrGL485352:684-6202
Accession: ZDB-GENE-030131-614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000008472	TUDOR	PF00567.24	6.1e-09	1	1
ENSPMAP00000008472	SMN	PF06003.12	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000008510	-	828	-	ENSPMAP00000008472	241 (aa)	-	S4RTD2

Gene Model

Click here to download ENSPMAG00000007705's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000007705's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000007705	smndc1	100	68.033	ENSG00000119953	SMNDC1	100	67.623	Homo_sapiens
ENSPMAG00000007705	smndc1	100	64.198	ENSAPOG00000021772	smndc1	100	64.198	Acanthochromis_polyacanthus
ENSPMAG00000007705	smndc1	100	68.033	ENSAMEG00000005251	SMNDC1	100	67.623	Ailuropoda_melanoleuca
ENSPMAG00000007705	smndc1	100	67.213	ENSACIG00000004819	smndc1	100	67.213	Amphilophus_citrinellus
ENSPMAG00000007705	smndc1	100	63.786	ENSAOCG00000017869	smndc1	100	63.786	Amphiprion_ocellaris
ENSPMAG00000007705	smndc1	100	63.786	ENSAPEG00000007752	smndc1	100	63.786	Amphiprion_percula
ENSPMAG00000007705	smndc1	100	66.667	ENSATEG00000006830	smndc1	100	66.667	Anabas_testudineus
ENSPMAG00000007705	smndc1	83	67.157	ENSAPLG00000004322	SMNDC1	100	68.137	Anas_platyrhynchos
ENSPMAG00000007705	smndc1	100	66.805	ENSACAG00000005983	SMNDC1	100	67.623	Anolis_carolinensis
ENSPMAG00000007705	smndc1	100	68.033	ENSANAG00000032875	SMNDC1	100	67.623	Aotus_nancymaae
ENSPMAG00000007705	smndc1	100	67.213	ENSACLG00000016360	smndc1	100	67.213	Astatotilapia_calliptera
ENSPMAG00000007705	smndc1	100	67.901	ENSAMXG00000020310	smndc1	100	67.901	Astyanax_mexicanus
ENSPMAG00000007705	smndc1	100	67.623	ENSBTAG00000000551	SMNDC1	100	67.623	Bos_taurus
ENSPMAG00000007705	smndc1	100	68.033	ENSCJAG00000018624	SMNDC1	100	67.623	Callithrix_jacchus
ENSPMAG00000007705	smndc1	100	68.033	ENSCAFG00000010720	SMNDC1	100	67.623	Canis_familiaris
ENSPMAG00000007705	smndc1	100	68.033	ENSCAFG00020011913	SMNDC1	100	67.623	Canis_lupus_dingo
ENSPMAG00000007705	smndc1	100	67.623	ENSCHIG00000010604	SMNDC1	100	67.623	Capra_hircus
ENSPMAG00000007705	smndc1	100	68.033	ENSTSYG00000026454	SMNDC1	100	67.623	Carlito_syrichta
ENSPMAG00000007705	smndc1	85	64.734	ENSCAPG00000009132	SMNDC1	100	64.734	Cavia_aperea
ENSPMAG00000007705	smndc1	100	67.623	ENSCPOG00000031666	SMNDC1	100	67.623	Cavia_porcellus
ENSPMAG00000007705	smndc1	100	68.033	ENSCCAG00000021793	SMNDC1	100	67.623	Cebus_capucinus
ENSPMAG00000007705	smndc1	100	67.623	ENSCATG00000035910	SMNDC1	100	67.213	Cercocebus_atys
ENSPMAG00000007705	smndc1	100	67.623	ENSCLAG00000002838	SMNDC1	100	67.623	Chinchilla_lanigera
ENSPMAG00000007705	smndc1	100	68.033	ENSCSAG00000005169	SMNDC1	100	67.623	Chlorocebus_sabaeus
ENSPMAG00000007705	smndc1	81	63.265	ENSCHOG00000002936	SMNDC1	100	63.265	Choloepus_hoffmanni
ENSPMAG00000007705	smndc1	100	67.220	ENSCPBG00000012837	SMNDC1	100	68.033	Chrysemys_picta_bellii
ENSPMAG00000007705	smndc1	100	52.459	ENSCANG00000036994	-	100	52.459	Colobus_angolensis_palliatus
ENSPMAG00000007705	smndc1	100	68.033	ENSCANG00000031720	-	100	67.623	Colobus_angolensis_palliatus
ENSPMAG00000007705	smndc1	100	62.705	ENSCANG00000034620	-	100	62.705	Colobus_angolensis_palliatus
ENSPMAG00000007705	smndc1	100	68.443	ENSCGRG00001012973	Smndc1	100	68.443	Cricetulus_griseus_chok1gshd
ENSPMAG00000007705	smndc1	100	68.443	ENSCGRG00000012396	Smndc1	100	68.443	Cricetulus_griseus_crigri
ENSPMAG00000007705	smndc1	100	63.071	ENSCSEG00000015621	smndc1	100	63.071	Cynoglossus_semilaevis
ENSPMAG00000007705	smndc1	100	62.963	ENSCVAG00000020432	smndc1	100	63.115	Cyprinodon_variegatus
ENSPMAG00000007705	smndc1	100	68.724	ENSDARG00000056235	smndc1	100	68.724	Danio_rerio
ENSPMAG00000007705	smndc1	100	67.623	ENSDNOG00000016387	SMNDC1	83	67.623	Dasypus_novemcinctus
ENSPMAG00000007705	smndc1	100	68.033	ENSDORG00000023715	Smndc1	100	67.623	Dipodomys_ordii
ENSPMAG00000007705	smndc1	97	43.137	FBgn0039977	CG17454	98	44.314	Drosophila_melanogaster
ENSPMAG00000007705	smndc1	100	73.444	ENSEBUG00000010929	smndc1	100	73.444	Eptatretus_burgeri
ENSPMAG00000007705	smndc1	100	68.033	ENSEASG00005014930	SMNDC1	100	67.623	Equus_asinus_asinus
ENSPMAG00000007705	smndc1	100	68.033	ENSECAG00000029973	SMNDC1	100	67.623	Equus_caballus
ENSPMAG00000007705	smndc1	60	76.042	ENSEEUG00000013407	-	72	76.042	Erinaceus_europaeus
ENSPMAG00000007705	smndc1	100	65.306	ENSELUG00000000227	smndc1	100	65.306	Esox_lucius
ENSPMAG00000007705	smndc1	100	68.033	ENSFCAG00000027353	SMNDC1	100	67.623	Felis_catus
ENSPMAG00000007705	smndc1	100	67.623	ENSFALG00000002306	SMNDC1	100	68.443	Ficedula_albicollis
ENSPMAG00000007705	smndc1	100	67.623	ENSFDAG00000006468	SMNDC1	100	67.623	Fukomys_damarensis
ENSPMAG00000007705	smndc1	100	65.021	ENSFHEG00000020150	smndc1	100	65.021	Fundulus_heteroclitus
ENSPMAG00000007705	smndc1	100	61.224	ENSGMOG00000016585	smndc1	100	61.224	Gadus_morhua
ENSPMAG00000007705	smndc1	100	67.623	ENSGALG00000008561	SMNDC1	100	68.443	Gallus_gallus
ENSPMAG00000007705	smndc1	100	65.021	ENSGAFG00000011582	smndc1	100	65.021	Gambusia_affinis
ENSPMAG00000007705	smndc1	100	66.122	ENSGACG00000009468	smndc1	100	66.122	Gasterosteus_aculeatus
ENSPMAG00000007705	smndc1	100	67.220	ENSGAGG00000024547	SMNDC1	100	68.033	Gopherus_agassizii
ENSPMAG00000007705	smndc1	100	68.033	ENSGGOG00000010071	SMNDC1	100	67.623	Gorilla_gorilla
ENSPMAG00000007705	smndc1	100	67.213	ENSHBUG00000017596	smndc1	100	67.213	Haplochromis_burtoni
ENSPMAG00000007705	smndc1	100	49.393	ENSHGLG00000001157	-	100	47.368	Heterocephalus_glaber_female
ENSPMAG00000007705	smndc1	100	67.623	ENSHGLG00000013390	-	100	67.623	Heterocephalus_glaber_female
ENSPMAG00000007705	smndc1	100	67.623	ENSHGLG00100004814	-	100	67.623	Heterocephalus_glaber_male
ENSPMAG00000007705	smndc1	100	53.846	ENSHGLG00100004278	-	100	52.000	Heterocephalus_glaber_male
ENSPMAG00000007705	smndc1	100	63.485	ENSHCOG00000000783	smndc1	100	63.115	Hippocampus_comes
ENSPMAG00000007705	smndc1	100	65.984	ENSIPUG00000004217	smndc1	100	65.984	Ictalurus_punctatus
ENSPMAG00000007705	smndc1	100	68.033	ENSSTOG00000006088	SMNDC1	100	67.623	Ictidomys_tridecemlineatus
ENSPMAG00000007705	smndc1	100	68.033	ENSJJAG00000019974	Smndc1	100	68.033	Jaculus_jaculus
ENSPMAG00000007705	smndc1	100	64.198	ENSKMAG00000020134	smndc1	100	64.490	Kryptolebias_marmoratus
ENSPMAG00000007705	smndc1	100	65.560	ENSLBEG00000004598	smndc1	100	65.560	Labrus_bergylta
ENSPMAG00000007705	smndc1	100	65.432	ENSLACG00000007784	SMNDC1	100	65.432	Latimeria_chalumnae
ENSPMAG00000007705	smndc1	100	64.898	ENSLOCG00000012355	smndc1	100	64.898	Lepisosteus_oculatus
ENSPMAG00000007705	smndc1	100	68.443	ENSLAFG00000014353	SMNDC1	100	68.033	Loxodonta_africana
ENSPMAG00000007705	smndc1	100	68.033	ENSMFAG00000002433	-	100	67.623	Macaca_fascicularis
ENSPMAG00000007705	smndc1	100	55.602	ENSMFAG00000038381	-	100	55.602	Macaca_fascicularis
ENSPMAG00000007705	smndc1	100	55.602	ENSMMUG00000045875	-	100	55.602	Macaca_mulatta
ENSPMAG00000007705	smndc1	100	68.033	ENSMMUG00000007775	SMNDC1	100	67.623	Macaca_mulatta
ENSPMAG00000007705	smndc1	100	60.246	ENSMNEG00000033853	-	100	60.246	Macaca_nemestrina
ENSPMAG00000007705	smndc1	100	68.033	ENSMNEG00000042963	-	100	67.623	Macaca_nemestrina
ENSPMAG00000007705	smndc1	100	62.857	ENSMLEG00000040236	SMNDC1	100	62.449	Mandrillus_leucophaeus
ENSPMAG00000007705	smndc1	90	60.731	ENSMAMG00000018233	smndc1	87	60.731	Mastacembelus_armatus
ENSPMAG00000007705	smndc1	100	67.213	ENSMZEG00005027510	smndc1	100	67.213	Maylandia_zebra
ENSPMAG00000007705	smndc1	97	60.944	ENSMGAG00000010777	SMNDC1	84	68.447	Meleagris_gallopavo
ENSPMAG00000007705	smndc1	100	68.033	ENSMAUG00000012243	-	100	67.623	Mesocricetus_auratus
ENSPMAG00000007705	smndc1	99	54.733	ENSMAUG00000005459	-	93	54.733	Mesocricetus_auratus
ENSPMAG00000007705	smndc1	100	68.033	ENSMICG00000027336	-	100	68.033	Microcebus_murinus
ENSPMAG00000007705	smndc1	100	59.016	ENSMICG00000031640	-	100	59.016	Microcebus_murinus
ENSPMAG00000007705	smndc1	100	68.033	ENSMOCG00000002458	Smndc1	100	68.033	Microtus_ochrogaster
ENSPMAG00000007705	smndc1	100	63.115	ENSMMOG00000008856	smndc1	100	63.115	Mola_mola
ENSPMAG00000007705	smndc1	100	68.033	ENSMODG00000010542	SMNDC1	100	67.623	Monodelphis_domestica
ENSPMAG00000007705	smndc1	100	64.344	ENSMALG00000017598	smndc1	100	64.344	Monopterus_albus
ENSPMAG00000007705	smndc1	100	67.623	MGP_CAROLIEiJ_G0023072	Smndc1	100	67.623	Mus_caroli
ENSPMAG00000007705	smndc1	100	67.623	ENSMUSG00000025024	Smndc1	100	67.213	Mus_musculus
ENSPMAG00000007705	smndc1	100	67.623	MGP_PahariEiJ_G0014560	Smndc1	100	67.213	Mus_pahari
ENSPMAG00000007705	smndc1	100	67.623	MGP_SPRETEiJ_G0023993	Smndc1	100	67.213	Mus_spretus
ENSPMAG00000007705	smndc1	100	68.033	ENSMPUG00000002089	SMNDC1	100	67.623	Mustela_putorius_furo
ENSPMAG00000007705	smndc1	100	67.213	ENSMLUG00000016007	SMNDC1	100	67.213	Myotis_lucifugus
ENSPMAG00000007705	smndc1	100	68.033	ENSNGAG00000006833	Smndc1	100	68.033	Nannospalax_galili
ENSPMAG00000007705	smndc1	100	67.213	ENSNBRG00000017089	smndc1	100	67.213	Neolamprologus_brichardi
ENSPMAG00000007705	smndc1	100	68.033	ENSNLEG00000015471	SMNDC1	100	67.623	Nomascus_leucogenys
ENSPMAG00000007705	smndc1	71	54.386	ENSMEUG00000010120	-	98	50.500	Notamacropus_eugenii
ENSPMAG00000007705	smndc1	100	67.623	ENSOPRG00000015348	SMNDC1	100	67.623	Ochotona_princeps
ENSPMAG00000007705	smndc1	100	47.541	ENSODEG00000007594	-	100	45.902	Octodon_degus
ENSPMAG00000007705	smndc1	100	67.213	ENSONIG00000000434	smndc1	100	67.213	Oreochromis_niloticus
ENSPMAG00000007705	smndc1	100	68.033	ENSOANG00000001598	SMNDC1	100	68.033	Ornithorhynchus_anatinus
ENSPMAG00000007705	smndc1	100	67.623	ENSOCUG00000008145	-	100	67.623	Oryctolagus_cuniculus
ENSPMAG00000007705	smndc1	100	51.037	ENSOCUG00000012274	-	100	53.112	Oryctolagus_cuniculus
ENSPMAG00000007705	smndc1	100	62.449	ENSORLG00000005934	smndc1	95	62.963	Oryzias_latipes
ENSPMAG00000007705	smndc1	100	62.449	ENSORLG00020008796	smndc1	95	62.963	Oryzias_latipes_hni
ENSPMAG00000007705	smndc1	100	62.449	ENSORLG00015013666	smndc1	100	62.963	Oryzias_latipes_hsok
ENSPMAG00000007705	smndc1	100	62.295	ENSOMEG00000007590	smndc1	100	62.295	Oryzias_melastigma
ENSPMAG00000007705	smndc1	100	67.623	ENSOGAG00000000571	SMNDC1	100	67.623	Otolemur_garnettii
ENSPMAG00000007705	smndc1	100	67.623	ENSOARG00000009500	SMNDC1	100	67.623	Ovis_aries
ENSPMAG00000007705	smndc1	100	68.033	ENSPPAG00000027815	SMNDC1	100	67.623	Pan_paniscus
ENSPMAG00000007705	smndc1	100	68.033	ENSPPRG00000013749	SMNDC1	100	67.623	Panthera_pardus
ENSPMAG00000007705	smndc1	100	68.033	ENSPTIG00000011451	SMNDC1	100	67.623	Panthera_tigris_altaica
ENSPMAG00000007705	smndc1	100	68.033	ENSPTRG00000002937	SMNDC1	100	67.623	Pan_troglodytes
ENSPMAG00000007705	smndc1	100	68.033	ENSPANG00000020805	-	100	67.623	Papio_anubis
ENSPMAG00000007705	smndc1	100	64.754	ENSPANG00000031346	-	100	64.754	Papio_anubis
ENSPMAG00000007705	smndc1	100	65.560	ENSPKIG00000017164	smndc1	100	66.393	Paramormyrops_kingsleyae
ENSPMAG00000007705	smndc1	100	67.220	ENSPSIG00000012257	SMNDC1	100	68.033	Pelodiscus_sinensis
ENSPMAG00000007705	smndc1	100	64.315	ENSPMGG00000015651	smndc1	100	64.315	Periophthalmus_magnuspinnatus
ENSPMAG00000007705	smndc1	100	68.033	ENSPEMG00000022058	Smndc1	100	67.623	Peromyscus_maniculatus_bairdii
ENSPMAG00000007705	smndc1	100	68.033	ENSPCIG00000018419	SMNDC1	100	67.623	Phascolarctos_cinereus
ENSPMAG00000007705	smndc1	97	54.077	ENSPCIG00000009693	-	100	54.077	Phascolarctos_cinereus
ENSPMAG00000007705	smndc1	100	65.021	ENSPFOG00000017113	smndc1	100	65.432	Poecilia_formosa
ENSPMAG00000007705	smndc1	100	64.609	ENSPLAG00000010372	smndc1	100	65.021	Poecilia_latipinna
ENSPMAG00000007705	smndc1	100	65.021	ENSPMEG00000012288	smndc1	100	65.432	Poecilia_mexicana
ENSPMAG00000007705	smndc1	100	65.432	ENSPREG00000012279	smndc1	100	65.164	Poecilia_reticulata
ENSPMAG00000007705	smndc1	100	68.033	ENSPPYG00000002643	SMNDC1	100	67.623	Pongo_abelii
ENSPMAG00000007705	smndc1	81	64.824	ENSPCAG00000016183	SMNDC1	100	64.824	Procavia_capensis
ENSPMAG00000007705	smndc1	100	68.033	ENSPCOG00000024343	SMNDC1	100	67.623	Propithecus_coquereli
ENSPMAG00000007705	smndc1	76	79.167	ENSPVAG00000004368	SMNDC1	77	79.167	Pteropus_vampyrus
ENSPMAG00000007705	smndc1	83	65.686	ENSPNYG00000024093	smndc1	86	65.686	Pundamilia_nyererei
ENSPMAG00000007705	smndc1	100	66.803	ENSPNAG00000025285	smndc1	100	66.803	Pygocentrus_nattereri
ENSPMAG00000007705	smndc1	100	67.623	ENSRNOG00000014833	Smndc1	100	67.623	Rattus_norvegicus
ENSPMAG00000007705	smndc1	100	68.033	ENSRBIG00000000224	-	100	67.623	Rhinopithecus_bieti
ENSPMAG00000007705	smndc1	100	56.557	ENSRBIG00000032452	-	100	56.557	Rhinopithecus_bieti
ENSPMAG00000007705	smndc1	100	56.557	ENSRROG00000039125	-	100	56.557	Rhinopithecus_roxellana
ENSPMAG00000007705	smndc1	100	68.033	ENSRROG00000044992	-	100	67.623	Rhinopithecus_roxellana
ENSPMAG00000007705	smndc1	100	68.033	ENSSBOG00000026789	SMNDC1	100	67.623	Saimiri_boliviensis_boliviensis
ENSPMAG00000007705	smndc1	100	68.033	ENSSHAG00000015189	SMNDC1	100	67.623	Sarcophilus_harrisii
ENSPMAG00000007705	smndc1	100	66.393	ENSSFOG00015008311	smndc1	100	66.393	Scleropages_formosus
ENSPMAG00000007705	smndc1	100	65.432	ENSSMAG00000020118	smndc1	100	65.432	Scophthalmus_maximus
ENSPMAG00000007705	smndc1	100	64.754	ENSSDUG00000015330	smndc1	100	64.754	Seriola_dumerili
ENSPMAG00000007705	smndc1	100	64.754	ENSSLDG00000017325	smndc1	100	64.754	Seriola_lalandi_dorsalis
ENSPMAG00000007705	smndc1	100	67.623	ENSSARG00000006063	SMNDC1	100	67.623	Sorex_araneus
ENSPMAG00000007705	smndc1	100	68.033	ENSSPUG00000004574	SMNDC1	100	68.033	Sphenodon_punctatus
ENSPMAG00000007705	smndc1	100	65.021	ENSSPAG00000000338	smndc1	100	65.021	Stegastes_partitus
ENSPMAG00000007705	smndc1	100	67.623	ENSSSCG00000030507	SMNDC1	100	67.213	Sus_scrofa
ENSPMAG00000007705	smndc1	100	67.623	ENSTGUG00000010599	SMNDC1	100	68.443	Taeniopygia_guttata
ENSPMAG00000007705	smndc1	100	65.021	ENSTRUG00000023281	smndc1	100	65.021	Takifugu_rubripes
ENSPMAG00000007705	smndc1	100	66.255	ENSTNIG00000013331	smndc1	100	66.255	Tetraodon_nigroviridis
ENSPMAG00000007705	smndc1	100	68.033	ENSTBEG00000014337	SMNDC1	100	68.033	Tupaia_belangeri
ENSPMAG00000007705	smndc1	100	68.033	ENSUAMG00000008142	SMNDC1	100	67.623	Ursus_americanus
ENSPMAG00000007705	smndc1	100	68.033	ENSUMAG00000023722	SMNDC1	100	67.623	Ursus_maritimus
ENSPMAG00000007705	smndc1	83	67.647	ENSVPAG00000003402	SMNDC1	100	67.647	Vicugna_pacos
ENSPMAG00000007705	smndc1	100	68.033	ENSVVUG00000007820	SMNDC1	100	67.623	Vulpes_vulpes
ENSPMAG00000007705	smndc1	60	57.241	ENSXETG00000015415	SMNDC1	100	57.241	Xenopus_tropicalis
ENSPMAG00000007705	smndc1	100	66.255	ENSXCOG00000009159	smndc1	100	66.255	Xiphophorus_couchianus
ENSPMAG00000007705	smndc1	100	66.255	ENSXMAG00000012755	smndc1	100	66.255	Xiphophorus_maculatus