EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000007842 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 6508 bases
Position: chrGL479162:11336-17843
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000008629	RRM_1	PF00076.22	4e-37	1	2
ENSPMAP00000008629	RRM_1	PF00076.22	4e-37	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000008668	-	1275	-	ENSPMAP00000008629	424 (aa)	-	S4RTT9

Gene Model

Click here to download ENSPMAG00000007842's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000007842's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000007842	-	50	95.283	ENSG00000143368	SF3B4	89	95.294	Homo_sapiens
ENSPMAG00000007842	-	50	95.283	ENSAPOG00000017647	sf3b4	53	95.305	Acanthochromis_polyacanthus
ENSPMAG00000007842	-	50	95.283	ENSAMEG00000010073	SF3B4	61	88.716	Ailuropoda_melanoleuca
ENSPMAG00000007842	-	50	94.366	ENSACIG00000018455	sf3b4	63	94.366	Amphilophus_citrinellus
ENSPMAG00000007842	-	50	95.283	ENSAOCG00000019801	sf3b4	53	95.305	Amphiprion_ocellaris
ENSPMAG00000007842	-	50	95.283	ENSAPEG00000010365	sf3b4	53	95.305	Amphiprion_percula
ENSPMAG00000007842	-	50	95.283	ENSATEG00000012844	sf3b4	53	95.305	Anabas_testudineus
ENSPMAG00000007842	-	50	95.327	ENSACAG00000010019	SF3B4	90	71.649	Anolis_carolinensis
ENSPMAG00000007842	-	50	95.283	ENSANAG00000031025	SF3B4	61	88.716	Aotus_nancymaae
ENSPMAG00000007842	-	55	90.717	ENSACLG00000014260	sf3b4	53	95.305	Astatotilapia_calliptera
ENSPMAG00000007842	-	50	95.305	ENSAMXG00000008282	sf3b4	53	95.305	Astyanax_mexicanus
ENSPMAG00000007842	-	50	95.283	ENSBTAG00000012495	SF3B4	61	88.716	Bos_taurus
ENSPMAG00000007842	-	50	95.283	ENSCAFG00000011617	SF3B4	61	88.716	Canis_familiaris
ENSPMAG00000007842	-	50	95.283	ENSCAFG00020019775	SF3B4	61	88.716	Canis_lupus_dingo
ENSPMAG00000007842	-	50	95.283	ENSCHIG00000025663	-	61	88.716	Capra_hircus
ENSPMAG00000007842	-	50	95.283	ENSTSYG00000009295	SF3B4	61	88.716	Carlito_syrichta
ENSPMAG00000007842	-	50	95.283	ENSCPOG00000008267	SF3B4	61	88.716	Cavia_porcellus
ENSPMAG00000007842	-	50	94.340	ENSCCAG00000021751	-	58	87.938	Cebus_capucinus
ENSPMAG00000007842	-	50	95.283	ENSCATG00000033114	SF3B4	61	88.716	Cercocebus_atys
ENSPMAG00000007842	-	50	95.283	ENSCLAG00000015851	SF3B4	61	88.716	Chinchilla_lanigera
ENSPMAG00000007842	-	50	95.283	ENSCSAG00000018129	SF3B4	61	88.716	Chlorocebus_sabaeus
ENSPMAG00000007842	-	50	95.327	ENSCPBG00000008041	SF3B4	90	73.575	Chrysemys_picta_bellii
ENSPMAG00000007842	-	51	89.302	ENSCING00000002337	-	57	89.202	Ciona_intestinalis
ENSPMAG00000007842	-	50	95.283	ENSCANG00000035579	SF3B4	61	88.716	Colobus_angolensis_palliatus
ENSPMAG00000007842	-	50	95.283	ENSCGRG00001003590	Sf3b4	61	88.716	Cricetulus_griseus_chok1gshd
ENSPMAG00000007842	-	50	95.283	ENSCGRG00000016914	Sf3b4	61	88.716	Cricetulus_griseus_crigri
ENSPMAG00000007842	-	55	90.678	ENSCVAG00000005536	sf3b4	67	85.057	Cyprinodon_variegatus
ENSPMAG00000007842	-	50	95.327	ENSDARG00000018574	sf3b4	53	95.305	Danio_rerio
ENSPMAG00000007842	-	50	95.283	ENSDORG00000016366	Sf3b4	61	88.716	Dipodomys_ordii
ENSPMAG00000007842	-	50	85.308	ENSETEG00000008963	SF3B4	61	78.988	Echinops_telfairi
ENSPMAG00000007842	-	50	95.283	ENSEASG00005001477	SF3B4	61	88.716	Equus_asinus_asinus
ENSPMAG00000007842	-	50	95.283	ENSECAG00000024737	SF3B4	61	88.716	Equus_caballus
ENSPMAG00000007842	-	50	95.283	ENSELUG00000012876	sf3b4	53	95.305	Esox_lucius
ENSPMAG00000007842	-	50	95.283	ENSFCAG00000010106	SF3B4	61	88.716	Felis_catus
ENSPMAG00000007842	-	50	95.283	ENSFDAG00000009286	SF3B4	61	88.716	Fukomys_damarensis
ENSPMAG00000007842	-	50	94.811	ENSGMOG00000002519	sf3b4	62	94.836	Gadus_morhua
ENSPMAG00000007842	-	50	95.327	ENSGALG00000013352	SF3B4	90	72.135	Gallus_gallus
ENSPMAG00000007842	-	60	86.328	ENSGAFG00000010181	sf3b4	54	95.305	Gambusia_affinis
ENSPMAG00000007842	-	50	95.327	ENSGAGG00000025055	SF3B4	54	87.160	Gopherus_agassizii
ENSPMAG00000007842	-	50	95.283	ENSGGOG00000004761	SF3B4	61	88.716	Gorilla_gorilla
ENSPMAG00000007842	-	52	82.143	ENSGGOG00000038845	-	54	84.906	Gorilla_gorilla
ENSPMAG00000007842	-	55	90.717	ENSHBUG00000002028	sf3b4	53	95.305	Haplochromis_burtoni
ENSPMAG00000007842	-	50	95.283	ENSHGLG00000012360	SF3B4	61	88.716	Heterocephalus_glaber_female
ENSPMAG00000007842	-	50	95.283	ENSHGLG00100008533	SF3B4	90	72.123	Heterocephalus_glaber_male
ENSPMAG00000007842	-	50	95.305	ENSHCOG00000003014	sf3b4	53	95.305	Hippocampus_comes
ENSPMAG00000007842	-	50	95.283	ENSIPUG00000012242	Sf3b4	64	87.109	Ictalurus_punctatus
ENSPMAG00000007842	-	50	95.283	ENSSTOG00000000684	-	61	88.716	Ictidomys_tridecemlineatus
ENSPMAG00000007842	-	53	66.912	ENSJJAG00000022500	Sf3b4	66	64.848	Jaculus_jaculus
ENSPMAG00000007842	-	55	90.717	ENSKMAG00000008154	sf3b4	54	95.305	Kryptolebias_marmoratus
ENSPMAG00000007842	-	50	95.283	ENSLBEG00000026818	sf3b4	53	95.305	Labrus_bergylta
ENSPMAG00000007842	-	54	92.544	ENSLACG00000004436	SF3B4	100	76.022	Latimeria_chalumnae
ENSPMAG00000007842	-	50	95.283	ENSLOCG00000009048	sf3b4	90	75.260	Lepisosteus_oculatus
ENSPMAG00000007842	-	50	95.283	ENSLAFG00000008531	SF3B4	60	88.716	Loxodonta_africana
ENSPMAG00000007842	-	50	95.283	ENSMFAG00000042395	SF3B4	61	88.716	Macaca_fascicularis
ENSPMAG00000007842	-	50	95.283	ENSMMUG00000007256	SF3B4	61	88.716	Macaca_mulatta
ENSPMAG00000007842	-	50	95.283	ENSMNEG00000031839	SF3B4	61	88.716	Macaca_nemestrina
ENSPMAG00000007842	-	50	95.283	ENSMLEG00000038667	SF3B4	61	88.716	Mandrillus_leucophaeus
ENSPMAG00000007842	-	55	90.717	ENSMAMG00000014692	sf3b4	53	95.305	Mastacembelus_armatus
ENSPMAG00000007842	-	55	90.717	ENSMZEG00005026741	sf3b4	53	95.305	Maylandia_zebra
ENSPMAG00000007842	-	50	95.327	ENSMGAG00000000653	SF3B4	62	87.160	Meleagris_gallopavo
ENSPMAG00000007842	-	50	95.283	ENSMAUG00000015266	Sf3b4	61	88.716	Mesocricetus_auratus
ENSPMAG00000007842	-	50	95.283	ENSMICG00000044961	SF3B4	61	88.716	Microcebus_murinus
ENSPMAG00000007842	-	50	95.283	ENSMOCG00000013658	-	61	88.716	Microtus_ochrogaster
ENSPMAG00000007842	-	50	95.283	ENSMODG00000018767	SF3B4	61	88.716	Monodelphis_domestica
ENSPMAG00000007842	-	50	95.305	ENSMALG00000006174	sf3b4	53	95.305	Monopterus_albus
ENSPMAG00000007842	-	50	95.283	MGP_CAROLIEiJ_G0025365	Sf3b4	61	88.760	Mus_caroli
ENSPMAG00000007842	-	50	95.283	ENSMUSG00000068856	Sf3b4	61	88.716	Mus_musculus
ENSPMAG00000007842	-	50	95.283	MGP_PahariEiJ_G0026809	Sf3b4	61	88.716	Mus_pahari
ENSPMAG00000007842	-	50	95.283	MGP_SPRETEiJ_G0026309	Sf3b4	61	88.716	Mus_spretus
ENSPMAG00000007842	-	50	95.283	ENSMPUG00000005563	SF3B4	61	88.716	Mustela_putorius_furo
ENSPMAG00000007842	-	50	95.283	ENSMLUG00000010789	SF3B4	61	88.716	Myotis_lucifugus
ENSPMAG00000007842	-	50	95.283	ENSNGAG00000016337	Sf3b4	61	88.716	Nannospalax_galili
ENSPMAG00000007842	-	55	90.717	ENSNBRG00000013865	sf3b4	53	95.305	Neolamprologus_brichardi
ENSPMAG00000007842	-	89	62.857	ENSNLEG00000000537	-	54	85.915	Nomascus_leucogenys
ENSPMAG00000007842	-	50	90.521	ENSOPRG00000010808	SF3B4	61	84.825	Ochotona_princeps
ENSPMAG00000007842	-	89	55.039	ENSODEG00000008916	-	55	72.642	Octodon_degus
ENSPMAG00000007842	-	54	76.856	ENSODEG00000003597	-	64	72.868	Octodon_degus
ENSPMAG00000007842	-	55	90.295	ENSONIG00000002730	sf3b4	53	95.305	Oreochromis_niloticus
ENSPMAG00000007842	-	50	95.283	ENSOCUG00000004614	SF3B4	61	88.716	Oryctolagus_cuniculus
ENSPMAG00000007842	-	50	95.327	ENSORLG00000003062	sf3b4	90	72.208	Oryzias_latipes
ENSPMAG00000007842	-	50	95.327	ENSORLG00020000687	sf3b4	90	72.208	Oryzias_latipes_hni
ENSPMAG00000007842	-	50	95.327	ENSORLG00015010989	sf3b4	90	72.208	Oryzias_latipes_hsok
ENSPMAG00000007842	-	50	95.327	ENSOMEG00000013694	sf3b4	54	95.305	Oryzias_melastigma
ENSPMAG00000007842	-	50	95.283	ENSOGAG00000006265	SF3B4	61	88.716	Otolemur_garnettii
ENSPMAG00000007842	-	50	95.283	ENSOARG00000020718	-	61	88.716	Ovis_aries
ENSPMAG00000007842	-	93	54.567	ENSOARG00000007368	-	51	78.947	Ovis_aries
ENSPMAG00000007842	-	50	95.283	ENSPPAG00000040904	SF3B4	61	88.716	Pan_paniscus
ENSPMAG00000007842	-	74	69.876	ENSPPAG00000030024	-	52	84.977	Pan_paniscus
ENSPMAG00000007842	-	50	95.283	ENSPPRG00000007384	SF3B4	61	88.716	Panthera_pardus
ENSPMAG00000007842	-	50	95.283	ENSPTIG00000014530	SF3B4	61	88.716	Panthera_tigris_altaica
ENSPMAG00000007842	-	74	69.279	ENSPTRG00000049727	-	53	85.446	Pan_troglodytes
ENSPMAG00000007842	-	50	95.283	ENSPTRG00000001243	SF3B4	61	88.716	Pan_troglodytes
ENSPMAG00000007842	-	50	95.283	ENSPANG00000005126	SF3B4	61	88.716	Papio_anubis
ENSPMAG00000007842	-	50	95.283	ENSPKIG00000020669	sf3b4	56	95.305	Paramormyrops_kingsleyae
ENSPMAG00000007842	-	50	95.283	ENSPEMG00000017568	Sf3b4	61	88.716	Peromyscus_maniculatus_bairdii
ENSPMAG00000007842	-	50	95.283	ENSPCIG00000008765	SF3B4	61	88.716	Phascolarctos_cinereus
ENSPMAG00000007842	-	55	90.717	ENSPFOG00000005754	sf3b4	54	95.305	Poecilia_formosa
ENSPMAG00000007842	-	55	90.717	ENSPLAG00000001401	sf3b4	59	95.305	Poecilia_latipinna
ENSPMAG00000007842	-	55	90.295	ENSPREG00000011076	sf3b4	53	95.305	Poecilia_reticulata
ENSPMAG00000007842	-	50	95.283	ENSPCOG00000015399	SF3B4	61	88.716	Propithecus_coquereli
ENSPMAG00000007842	-	50	95.283	ENSPVAG00000014171	SF3B4	61	88.716	Pteropus_vampyrus
ENSPMAG00000007842	-	55	90.717	ENSPNYG00000012700	sf3b4	53	95.305	Pundamilia_nyererei
ENSPMAG00000007842	-	50	95.305	ENSPNAG00000000686	sf3b4	54	95.305	Pygocentrus_nattereri
ENSPMAG00000007842	-	50	95.283	ENSRNOG00000021181	Sf3b4	61	88.716	Rattus_norvegicus
ENSPMAG00000007842	-	50	95.283	ENSRBIG00000043392	SF3B4	61	88.716	Rhinopithecus_bieti
ENSPMAG00000007842	-	50	95.283	ENSRROG00000029366	SF3B4	61	88.716	Rhinopithecus_roxellana
ENSPMAG00000007842	-	50	94.811	ENSSBOG00000012310	-	61	88.327	Saimiri_boliviensis_boliviensis
ENSPMAG00000007842	-	54	71.930	ENSSBOG00000025174	-	56	68.217	Saimiri_boliviensis_boliviensis
ENSPMAG00000007842	-	50	90.094	ENSSHAG00000004043	SF3B4	60	84.436	Sarcophilus_harrisii
ENSPMAG00000007842	-	50	95.283	ENSSFOG00015008864	sf3b4	52	95.305	Scleropages_formosus
ENSPMAG00000007842	-	50	95.283	ENSSMAG00000006837	sf3b4	53	95.305	Scophthalmus_maximus
ENSPMAG00000007842	-	50	95.283	ENSSDUG00000012064	sf3b4	53	95.305	Seriola_dumerili
ENSPMAG00000007842	-	50	95.283	ENSSLDG00000014226	sf3b4	53	95.305	Seriola_lalandi_dorsalis
ENSPMAG00000007842	-	50	95.283	ENSSPAG00000019219	sf3b4	53	95.305	Stegastes_partitus
ENSPMAG00000007842	-	50	95.283	ENSSSCG00000006665	-	61	88.716	Sus_scrofa
ENSPMAG00000007842	-	78	50.303	ENSSSCG00000039440	-	50	60.563	Sus_scrofa
ENSPMAG00000007842	-	50	95.283	ENSTGUG00000004470	SF3B4	84	95.305	Taeniopygia_guttata
ENSPMAG00000007842	-	53	93.778	ENSTRUG00000004516	sf3b4	54	95.305	Takifugu_rubripes
ENSPMAG00000007842	-	50	95.283	ENSTNIG00000009156	sf3b4	67	85.057	Tetraodon_nigroviridis
ENSPMAG00000007842	-	50	95.283	ENSTTRG00000005217	SF3B4	61	88.716	Tursiops_truncatus
ENSPMAG00000007842	-	50	95.283	ENSUAMG00000022468	SF3B4	61	88.716	Ursus_americanus
ENSPMAG00000007842	-	50	95.283	ENSUMAG00000003802	SF3B4	61	88.716	Ursus_maritimus
ENSPMAG00000007842	-	50	95.283	ENSVVUG00000007732	-	66	87.160	Vulpes_vulpes
ENSPMAG00000007842	-	50	95.283	ENSXCOG00000019895	sf3b4	54	95.305	Xiphophorus_couchianus
ENSPMAG00000007842	-	50	95.283	ENSXMAG00000003772	sf3b4	54	95.305	Xiphophorus_maculatus