EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000007867 (Gene tree)
Gene ID: -
Gene Symbol: rab5c (1 of many)
Alias: -
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 5936 bases
Position: chrGL480235:1493-7428
Accession: ZDB-GENE-031118-30
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000008660	MMR_HSR1	PF01926.23	3.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000008699	-	636	-	ENSPMAP00000008660	211 (aa)	-	S4RTX0

Gene Model

Click here to download ENSPMAG00000007867's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000007867's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000007867	rab5c	90	40.097	ENSPMAG00000006105	rab30	95	40.097
ENSPMAG00000007867	rab5c	57	30.645	ENSPMAG00000007507	arl8ba	63	30.645
ENSPMAG00000007867	rab5c	90	42.347	ENSPMAG00000001801	rab1ba	95	42.347
ENSPMAG00000007867	rab5c	99	82.857	ENSPMAG00000001399	rab5c	99	82.857
ENSPMAG00000007867	rab5c	71	37.423	ENSPMAG00000005537	rab27a	73	37.423
ENSPMAG00000007867	rab5c	100	75.342	ENSPMAG00000000008	rab5c	100	75.342
ENSPMAG00000007867	rab5c	76	38.824	ENSPMAG00000007247	rab33ba	69	38.824
ENSPMAG00000007867	rab5c	73	33.117	ENSPMAG00000000547	rheb	83	33.117
ENSPMAG00000007867	rab5c	91	37.879	ENSPMAG00000005322	rab18b	95	37.879
ENSPMAG00000007867	rab5c	79	46.988	ENSPMAG00000002006	-	77	46.988
ENSPMAG00000007867	rab5c	76	45.342	ENSPMAG00000008764	RAB2B	88	45.342
ENSPMAG00000007867	rab5c	73	32.903	ENSPMAG00000006835	-	71	33.533
ENSPMAG00000007867	rab5c	74	35.625	ENSPMAG00000004657	rab36	66	35.625
ENSPMAG00000007867	rab5c	79	45.783	ENSPMAG00000001403	-	83	45.783
ENSPMAG00000007867	rab5c	76	40.741	ENSPMAG00000005938	-	97	40.741
ENSPMAG00000007867	rab5c	55	41.880	ENSPMAG00000004439	rab20	53	42.373
ENSPMAG00000007867	rab5c	88	42.857	ENSPMAG00000006171	-	89	42.857
ENSPMAG00000007867	rab5c	80	43.860	ENSPMAG00000009335	-	83	43.860
ENSPMAG00000007867	rab5c	70	36.601	ENSPMAG00000006671	si:cabz01085950.1	74	36.601
ENSPMAG00000007867	rab5c	80	31.953	ENSPMAG00000004548	hrasb	87	31.953

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000007867	rab5c	100	78.605	ENSG00000108774	RAB5C	100	89.011	Homo_sapiens
ENSPMAG00000007867	rab5c	89	83.511	ENSAPOG00000016864	rab5c	98	76.037	Acanthochromis_polyacanthus
ENSPMAG00000007867	rab5c	99	78.972	ENSAMEG00000006003	RAB5C	99	78.972	Ailuropoda_melanoleuca
ENSPMAG00000007867	rab5c	89	82.447	ENSACIG00000010896	rab5c	87	81.818	Amphilophus_citrinellus
ENSPMAG00000007867	rab5c	89	83.511	ENSAOCG00000016614	rab5c	98	75.576	Amphiprion_ocellaris
ENSPMAG00000007867	rab5c	86	84.530	ENSAPEG00000017868	-	96	76.190	Amphiprion_percula
ENSPMAG00000007867	rab5c	89	83.511	ENSATEG00000001937	rab5c	100	74.771	Anabas_testudineus
ENSPMAG00000007867	rab5c	91	84.896	ENSANAG00000025390	RAB5C	94	84.896	Aotus_nancymaae
ENSPMAG00000007867	rab5c	97	76.303	ENSACLG00000008615	-	99	75.342	Astatotilapia_calliptera
ENSPMAG00000007867	rab5c	88	83.333	ENSACLG00000002706	rab5c	87	81.250	Astatotilapia_calliptera
ENSPMAG00000007867	rab5c	86	85.165	ENSAMXG00000037267	-	99	78.095	Astyanax_mexicanus
ENSPMAG00000007867	rab5c	89	83.598	ENSAMXG00000043717	rab5c	90	81.313	Astyanax_mexicanus
ENSPMAG00000007867	rab5c	99	79.439	ENSBTAG00000006982	RAB5C	99	79.439	Bos_taurus
ENSPMAG00000007867	rab5c	99	71.698	WBGene00004268	rab-5	99	71.698	Caenorhabditis_elegans
ENSPMAG00000007867	rab5c	100	79.070	ENSCAFG00000015629	RAB5C	99	79.070	Canis_familiaris
ENSPMAG00000007867	rab5c	100	79.070	ENSCAFG00020013537	RAB5C	99	79.070	Canis_lupus_dingo
ENSPMAG00000007867	rab5c	99	79.439	ENSCHIG00000012960	RAB5C	99	79.439	Capra_hircus
ENSPMAG00000007867	rab5c	99	78.972	ENSTSYG00000030531	RAB5C	99	78.972	Carlito_syrichta
ENSPMAG00000007867	rab5c	99	78.505	ENSCCAG00000025940	RAB5C	99	78.505	Cebus_capucinus
ENSPMAG00000007867	rab5c	99	78.972	ENSCATG00000040873	RAB5C	99	78.972	Cercocebus_atys
ENSPMAG00000007867	rab5c	100	78.140	ENSCLAG00000016650	RAB5C	99	78.140	Chinchilla_lanigera
ENSPMAG00000007867	rab5c	84	85.955	ENSCHOG00000009886	RAB5C	100	85.955	Choloepus_hoffmanni
ENSPMAG00000007867	rab5c	99	74.074	ENSCING00000003340	-	99	74.074	Ciona_intestinalis
ENSPMAG00000007867	rab5c	99	71.818	ENSCSAVG00000000613	-	99	81.481	Ciona_savignyi
ENSPMAG00000007867	rab5c	99	78.972	ENSCGRG00001014226	Rab5c	99	78.972	Cricetulus_griseus_chok1gshd
ENSPMAG00000007867	rab5c	99	78.972	ENSCGRG00000007534	Rab5c	99	78.972	Cricetulus_griseus_crigri
ENSPMAG00000007867	rab5c	99	76.959	ENSCSEG00000017024	rab5c	98	76.959	Cynoglossus_semilaevis
ENSPMAG00000007867	rab5c	89	83.511	ENSCVAG00000009550	rab5c	98	76.852	Cyprinodon_variegatus
ENSPMAG00000007867	rab5c	99	78.505	ENSDNOG00000038853	RAB5C	99	78.505	Dasypus_novemcinctus
ENSPMAG00000007867	rab5c	99	78.037	ENSDORG00000006819	Rab5c	99	78.037	Dipodomys_ordii
ENSPMAG00000007867	rab5c	98	75.728	FBgn0014010	Rab5	94	75.728	Drosophila_melanogaster
ENSPMAG00000007867	rab5c	100	81.604	ENSEBUG00000014794	rab5c	100	81.604	Eptatretus_burgeri
ENSPMAG00000007867	rab5c	99	78.972	ENSEASG00005009281	RAB5C	99	78.972	Equus_asinus_asinus
ENSPMAG00000007867	rab5c	99	78.972	ENSECAG00000025054	RAB5C	99	78.972	Equus_caballus
ENSPMAG00000007867	rab5c	99	78.505	ENSEEUG00000002790	RAB5C	99	78.505	Erinaceus_europaeus
ENSPMAG00000007867	rab5c	88	83.333	ENSELUG00000018516	rab5c	89	80.203	Esox_lucius
ENSPMAG00000007867	rab5c	99	74.537	ENSELUG00000010439	-	98	74.537	Esox_lucius
ENSPMAG00000007867	rab5c	99	79.439	ENSFCAG00000002148	RAB5C	99	79.439	Felis_catus
ENSPMAG00000007867	rab5c	100	78.140	ENSFDAG00000021541	RAB5C	99	78.140	Fukomys_damarensis
ENSPMAG00000007867	rab5c	89	82.979	ENSFHEG00000012117	rab5c	98	76.389	Fundulus_heteroclitus
ENSPMAG00000007867	rab5c	99	76.606	ENSFHEG00000015268	-	99	76.606	Fundulus_heteroclitus
ENSPMAG00000007867	rab5c	82	81.395	ENSGMOG00000001876	-	99	81.395	Gadus_morhua
ENSPMAG00000007867	rab5c	89	82.979	ENSGMOG00000015096	rab5c	87	81.771	Gadus_morhua
ENSPMAG00000007867	rab5c	91	82.990	ENSGAFG00000003642	-	88	82.143	Gambusia_affinis
ENSPMAG00000007867	rab5c	89	83.511	ENSGAFG00000000884	rab5c	98	76.389	Gambusia_affinis
ENSPMAG00000007867	rab5c	89	83.511	ENSGACG00000008659	rab5c	98	76.389	Gasterosteus_aculeatus
ENSPMAG00000007867	rab5c	99	78.972	ENSGGOG00000005472	RAB5C	99	78.972	Gorilla_gorilla
ENSPMAG00000007867	rab5c	97	76.303	ENSHBUG00000006823	-	99	75.342	Haplochromis_burtoni
ENSPMAG00000007867	rab5c	88	83.333	ENSHBUG00000002014	rab5c	87	81.250	Haplochromis_burtoni
ENSPMAG00000007867	rab5c	91	84.896	ENSHGLG00000012067	RAB5C	89	84.896	Heterocephalus_glaber_female
ENSPMAG00000007867	rab5c	97	77.251	ENSHCOG00000020238	-	99	76.037	Hippocampus_comes
ENSPMAG00000007867	rab5c	89	83.069	ENSHCOG00000004662	rab5c	97	75.688	Hippocampus_comes
ENSPMAG00000007867	rab5c	97	74.408	ENSIPUG00000020082	rab5c	98	74.886	Ictalurus_punctatus
ENSPMAG00000007867	rab5c	100	79.070	ENSSTOG00000006620	RAB5C	99	79.070	Ictidomys_tridecemlineatus
ENSPMAG00000007867	rab5c	99	78.972	ENSJJAG00000021181	Rab5c	99	78.972	Jaculus_jaculus
ENSPMAG00000007867	rab5c	89	82.447	ENSKMAG00000020038	rab5c	98	74.654	Kryptolebias_marmoratus
ENSPMAG00000007867	rab5c	99	73.394	ENSKMAG00000017417	-	99	73.394	Kryptolebias_marmoratus
ENSPMAG00000007867	rab5c	89	83.511	ENSLBEG00000004128	rab5c	87	82.292	Labrus_bergylta
ENSPMAG00000007867	rab5c	100	75.576	ENSLBEG00000010408	-	99	75.576	Labrus_bergylta
ENSPMAG00000007867	rab5c	99	77.103	ENSLOCG00000012566	rab5c	100	77.103	Lepisosteus_oculatus
ENSPMAG00000007867	rab5c	99	78.972	ENSMFAG00000039627	RAB5C	99	78.972	Macaca_fascicularis
ENSPMAG00000007867	rab5c	99	78.972	ENSMNEG00000000355	RAB5C	99	78.972	Macaca_nemestrina
ENSPMAG00000007867	rab5c	89	82.979	ENSMAMG00000022322	rab5c	87	81.771	Mastacembelus_armatus
ENSPMAG00000007867	rab5c	99	75.688	ENSMAMG00000016207	-	99	75.688	Mastacembelus_armatus
ENSPMAG00000007867	rab5c	88	83.333	ENSMZEG00005022735	rab5c	87	81.250	Maylandia_zebra
ENSPMAG00000007867	rab5c	97	76.303	ENSMZEG00005021090	-	99	75.342	Maylandia_zebra
ENSPMAG00000007867	rab5c	100	78.605	ENSMAUG00000015005	Rab5c	99	78.605	Mesocricetus_auratus
ENSPMAG00000007867	rab5c	99	78.505	ENSMICG00000041608	RAB5C	99	78.505	Microcebus_murinus
ENSPMAG00000007867	rab5c	100	78.605	ENSMOCG00000018531	-	99	78.605	Microtus_ochrogaster
ENSPMAG00000007867	rab5c	99	75.926	ENSMMOG00000020621	rab5c	98	75.926	Mola_mola
ENSPMAG00000007867	rab5c	100	77.064	ENSMALG00000022348	-	99	77.064	Monopterus_albus
ENSPMAG00000007867	rab5c	96	73.810	ENSMALG00000006052	rab5c	96	73.148	Monopterus_albus
ENSPMAG00000007867	rab5c	100	78.605	MGP_CAROLIEiJ_G0017184	Rab5c	99	78.605	Mus_caroli
ENSPMAG00000007867	rab5c	100	78.605	ENSMUSG00000019173	Rab5c	99	78.605	Mus_musculus
ENSPMAG00000007867	rab5c	100	78.605	MGP_PahariEiJ_G0018314	Rab5c	99	78.605	Mus_pahari
ENSPMAG00000007867	rab5c	100	78.605	MGP_SPRETEiJ_G0018027	Rab5c	99	78.605	Mus_spretus
ENSPMAG00000007867	rab5c	99	78.972	ENSMPUG00000010554	RAB5C	99	78.972	Mustela_putorius_furo
ENSPMAG00000007867	rab5c	99	78.037	ENSNGAG00000010286	Rab5c	99	78.037	Nannospalax_galili
ENSPMAG00000007867	rab5c	89	82.447	ENSNBRG00000018165	rab5c	87	81.250	Neolamprologus_brichardi
ENSPMAG00000007867	rab5c	97	76.303	ENSNBRG00000016922	-	99	75.342	Neolamprologus_brichardi
ENSPMAG00000007867	rab5c	84	80.899	ENSOPRG00000008255	RAB5C	100	80.899	Ochotona_princeps
ENSPMAG00000007867	rab5c	100	78.605	ENSODEG00000017920	RAB5C	99	78.605	Octodon_degus
ENSPMAG00000007867	rab5c	89	82.447	ENSONIG00000001113	rab5c	87	81.250	Oreochromis_niloticus
ENSPMAG00000007867	rab5c	89	82.447	ENSORLG00000003882	rab5c	100	73.853	Oryzias_latipes
ENSPMAG00000007867	rab5c	100	73.853	ENSORLG00020008388	rab5c	100	73.853	Oryzias_latipes_hni
ENSPMAG00000007867	rab5c	89	82.447	ENSORLG00015021900	rab5c	100	73.853	Oryzias_latipes_hsok
ENSPMAG00000007867	rab5c	89	82.447	ENSOMEG00000023078	rab5c	100	73.853	Oryzias_melastigma
ENSPMAG00000007867	rab5c	99	78.505	ENSOGAG00000009456	RAB5C	99	78.505	Otolemur_garnettii
ENSPMAG00000007867	rab5c	99	79.439	ENSOARG00000018768	RAB5C	99	79.439	Ovis_aries
ENSPMAG00000007867	rab5c	99	78.972	ENSPPAG00000037206	RAB5C	99	78.972	Pan_paniscus
ENSPMAG00000007867	rab5c	99	79.439	ENSPPRG00000005745	RAB5C	99	79.439	Panthera_pardus
ENSPMAG00000007867	rab5c	99	79.439	ENSPTIG00000008177	RAB5C	99	79.439	Panthera_tigris_altaica
ENSPMAG00000007867	rab5c	99	78.972	ENSPTRG00000009194	RAB5C	99	78.972	Pan_troglodytes
ENSPMAG00000007867	rab5c	99	77.209	ENSPKIG00000001237	-	99	77.209	Paramormyrops_kingsleyae
ENSPMAG00000007867	rab5c	99	78.241	ENSPKIG00000020112	-	99	78.241	Paramormyrops_kingsleyae
ENSPMAG00000007867	rab5c	89	81.915	ENSPMGG00000010792	rab5c	87	81.579	Periophthalmus_magnuspinnatus
ENSPMAG00000007867	rab5c	100	78.605	ENSPEMG00000017971	Rab5c	99	78.605	Peromyscus_maniculatus_bairdii
ENSPMAG00000007867	rab5c	99	80.374	ENSPCIG00000020225	-	99	80.374	Phascolarctos_cinereus
ENSPMAG00000007867	rab5c	89	83.511	ENSPLAG00000004790	rab5c	98	76.389	Poecilia_latipinna
ENSPMAG00000007867	rab5c	99	76.279	ENSPLAG00000016333	-	99	76.279	Poecilia_latipinna
ENSPMAG00000007867	rab5c	89	83.511	ENSPMEG00000011336	rab5c	98	76.389	Poecilia_mexicana
ENSPMAG00000007867	rab5c	89	84.127	ENSPMEG00000012614	-	88	81.633	Poecilia_mexicana
ENSPMAG00000007867	rab5c	89	83.069	ENSPREG00000022167	-	90	83.069	Poecilia_reticulata
ENSPMAG00000007867	rab5c	89	83.511	ENSPREG00000010146	rab5c	98	76.389	Poecilia_reticulata
ENSPMAG00000007867	rab5c	99	78.972	ENSPPYG00000008398	RAB5C	99	78.972	Pongo_abelii
ENSPMAG00000007867	rab5c	99	78.404	ENSPCAG00000016412	RAB5C	99	78.404	Procavia_capensis
ENSPMAG00000007867	rab5c	99	78.037	ENSPCOG00000026327	RAB5C	99	78.037	Propithecus_coquereli
ENSPMAG00000007867	rab5c	99	78.972	ENSPVAG00000003867	RAB5C	99	78.972	Pteropus_vampyrus
ENSPMAG00000007867	rab5c	97	76.303	ENSPNYG00000015851	-	99	75.342	Pundamilia_nyererei
ENSPMAG00000007867	rab5c	88	83.333	ENSPNYG00000010615	rab5c	87	81.250	Pundamilia_nyererei
ENSPMAG00000007867	rab5c	86	86.264	ENSPNAG00000002218	-	99	79.048	Pygocentrus_nattereri
ENSPMAG00000007867	rab5c	92	81.313	ENSPNAG00000028138	rab5c	90	81.313	Pygocentrus_nattereri
ENSPMAG00000007867	rab5c	100	78.605	ENSRNOG00000018568	Rab5c	99	78.605	Rattus_norvegicus
ENSPMAG00000007867	rab5c	99	78.972	ENSRBIG00000031376	RAB5C	99	78.972	Rhinopithecus_bieti
ENSPMAG00000007867	rab5c	99	78.972	ENSRROG00000032895	RAB5C	99	78.972	Rhinopithecus_roxellana
ENSPMAG00000007867	rab5c	99	78.505	ENSSBOG00000032552	-	99	78.505	Saimiri_boliviensis_boliviensis
ENSPMAG00000007867	rab5c	99	80.374	ENSSHAG00000005267	-	99	80.374	Sarcophilus_harrisii
ENSPMAG00000007867	rab5c	100	74.654	ENSSFOG00015009988	-	99	74.654	Scleropages_formosus
ENSPMAG00000007867	rab5c	91	81.771	ENSSMAG00000007323	rab5c	87	81.771	Scophthalmus_maximus
ENSPMAG00000007867	rab5c	91	82.292	ENSSDUG00000023008	rab5c	87	82.292	Seriola_dumerili
ENSPMAG00000007867	rab5c	91	81.771	ENSSLDG00000017771	rab5c	87	81.771	Seriola_lalandi_dorsalis
ENSPMAG00000007867	rab5c	99	79.439	ENSSPUG00000012950	-	99	79.439	Sphenodon_punctatus
ENSPMAG00000007867	rab5c	89	83.511	ENSSPAG00000006436	rab5c	87	82.292	Stegastes_partitus
ENSPMAG00000007867	rab5c	99	79.439	ENSSSCG00000032467	RAB5C	99	79.439	Sus_scrofa
ENSPMAG00000007867	rab5c	89	82.447	ENSTRUG00000015590	rab5c	87	81.250	Takifugu_rubripes
ENSPMAG00000007867	rab5c	89	82.888	ENSTNIG00000011711	rab5c	84	82.888	Tetraodon_nigroviridis
ENSPMAG00000007867	rab5c	99	79.907	ENSTBEG00000007092	RAB5C	99	79.907	Tupaia_belangeri
ENSPMAG00000007867	rab5c	99	79.439	ENSTTRG00000006673	RAB5C	99	79.439	Tursiops_truncatus
ENSPMAG00000007867	rab5c	99	78.972	ENSUAMG00000024343	RAB5C	99	78.972	Ursus_americanus
ENSPMAG00000007867	rab5c	99	78.972	ENSUMAG00000023270	RAB5C	99	78.972	Ursus_maritimus
ENSPMAG00000007867	rab5c	88	84.324	ENSXCOG00000016788	rab5c	88	81.443	Xiphophorus_couchianus
ENSPMAG00000007867	rab5c	92	82.564	ENSXCOG00000006300	-	88	82.143	Xiphophorus_couchianus
ENSPMAG00000007867	rab5c	100	76.389	ENSXMAG00000022179	-	99	76.389	Xiphophorus_maculatus
ENSPMAG00000007867	rab5c	89	83.511	ENSXMAG00000003266	rab5c	98	76.389	Xiphophorus_maculatus