EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000007885 (Gene tree)
Gene ID: -
Gene Symbol: pabpc4 (1 of many)
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 4 (inducible form)
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 4559 bases
Position: chrGL486463:5403-9961
Accession: ZDB-GENE-030131-9663
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000008696	PABP	PF00658.18	9.4e-32	1	1
ENSPMAP00000008696	RRM_1	PF00076.22	3.9e-51	1	3
ENSPMAP00000008696	RRM_1	PF00076.22	3.9e-51	2	3
ENSPMAP00000008696	RRM_1	PF00076.22	3.9e-51	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000008735	-	1806	-	ENSPMAP00000008696	490 (aa)	-	S4RU06

Gene Model

Click here to download ENSPMAG00000007885's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000007885's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000007885	pabpc4	86	67.416	ENSPMAG00000002836	pabpc4	99	68.161

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000007885	pabpc4	100	73.265	ENSG00000090621	PABPC4	99	96.429	Homo_sapiens
ENSPMAG00000007885	pabpc4	99	73.361	ENSAPOG00000001161	pabpc4	95	74.370	Acanthochromis_polyacanthus
ENSPMAG00000007885	pabpc4	100	66.667	ENSAMEG00000011535	-	97	67.505	Ailuropoda_melanoleuca
ENSPMAG00000007885	pabpc4	99	44.309	ENSAMEG00000015083	-	74	43.724	Ailuropoda_melanoleuca
ENSPMAG00000007885	pabpc4	99	72.414	ENSACIG00000023343	pabpc4	95	73.389	Amphilophus_citrinellus
ENSPMAG00000007885	pabpc4	100	73.727	ENSAOCG00000021529	pabpc4	95	74.370	Amphiprion_ocellaris
ENSPMAG00000007885	pabpc4	100	73.727	ENSAPEG00000019196	pabpc4	95	74.370	Amphiprion_percula
ENSPMAG00000007885	pabpc4	100	74.390	ENSATEG00000007402	pabpc4	95	75.000	Anabas_testudineus
ENSPMAG00000007885	pabpc4	99	72.200	ENSAPLG00000009729	-	97	73.006	Anas_platyrhynchos
ENSPMAG00000007885	pabpc4	99	71.912	ENSACAG00000002544	PABPC4	92	72.131	Anolis_carolinensis
ENSPMAG00000007885	pabpc4	100	69.822	ENSANAG00000025079	PABPC4	95	71.311	Aotus_nancymaae
ENSPMAG00000007885	pabpc4	100	73.931	ENSACLG00000019558	pabpc4	95	74.580	Astatotilapia_calliptera
ENSPMAG00000007885	pabpc4	99	65.130	ENSAMXG00000018779	pabpc4	95	65.567	Astyanax_mexicanus
ENSPMAG00000007885	pabpc4	100	68.401	ENSBTAG00000017125	PABPC4	96	69.461	Bos_taurus
ENSPMAG00000007885	pabpc4	100	69.822	ENSCJAG00000002512	-	97	71.107	Callithrix_jacchus
ENSPMAG00000007885	pabpc4	72	60.000	ENSCJAG00000045953	-	97	60.000	Callithrix_jacchus
ENSPMAG00000007885	pabpc4	100	69.625	ENSCAFG00000003081	PABPC4	95	71.107	Canis_familiaris
ENSPMAG00000007885	pabpc4	100	66.667	ENSCAFG00020004161	PABPC4	96	67.505	Canis_lupus_dingo
ENSPMAG00000007885	pabpc4	100	66.479	ENSCHIG00000019398	-	96	67.311	Capra_hircus
ENSPMAG00000007885	pabpc4	99	52.642	ENSCHIG00000023385	-	95	52.610	Capra_hircus
ENSPMAG00000007885	pabpc4	100	71.173	ENSTSYG00000006532	PABPC4	95	71.311	Carlito_syrichta
ENSPMAG00000007885	pabpc4	100	69.822	ENSCAPG00000015984	PABPC4	97	70.902	Cavia_aperea
ENSPMAG00000007885	pabpc4	100	70.588	ENSCPOG00000009552	PABPC4	97	71.488	Cavia_porcellus
ENSPMAG00000007885	pabpc4	100	69.428	ENSCCAG00000037306	PABPC4	95	70.902	Cebus_capucinus
ENSPMAG00000007885	pabpc4	100	69.822	ENSCATG00000042164	PABPC4	95	71.311	Cercocebus_atys
ENSPMAG00000007885	pabpc4	100	70.217	ENSCLAG00000011899	PABPC4	97	71.311	Chinchilla_lanigera
ENSPMAG00000007885	pabpc4	100	66.854	ENSCSAG00000001135	PABPC4	96	67.698	Chlorocebus_sabaeus
ENSPMAG00000007885	pabpc4	81	80.198	ENSCHOG00000005327	PABPC4	77	82.558	Choloepus_hoffmanni
ENSPMAG00000007885	pabpc4	99	72.565	ENSCPBG00000001038	PABPC4	97	72.597	Chrysemys_picta_bellii
ENSPMAG00000007885	pabpc4	100	69.822	ENSCANG00000034177	PABPC4	97	71.311	Colobus_angolensis_palliatus
ENSPMAG00000007885	pabpc4	99	72.165	ENSCGRG00001018166	Pabpc4	96	73.109	Cricetulus_griseus_chok1gshd
ENSPMAG00000007885	pabpc4	99	72.314	ENSCGRG00000009777	Pabpc4	96	73.109	Cricetulus_griseus_crigri
ENSPMAG00000007885	pabpc4	100	74.390	ENSCSEG00000000130	pabpc4	95	75.210	Cynoglossus_semilaevis
ENSPMAG00000007885	pabpc4	100	73.727	ENSCVAG00000019246	pabpc4	96	75.000	Cyprinodon_variegatus
ENSPMAG00000007885	pabpc4	99	71.486	ENSDARG00000059259	pabpc4	99	71.368	Danio_rerio
ENSPMAG00000007885	pabpc4	100	69.822	ENSDNOG00000018444	-	92	71.311	Dasypus_novemcinctus
ENSPMAG00000007885	pabpc4	100	69.305	ENSDORG00000011581	Pabpc4	95	69.860	Dipodomys_ordii
ENSPMAG00000007885	pabpc4	100	64.764	ENSETEG00000018453	-	72	65.714	Echinops_telfairi
ENSPMAG00000007885	pabpc4	98	50.924	ENSETEG00000009172	-	89	50.734	Echinops_telfairi
ENSPMAG00000007885	pabpc4	97	70.782	ENSEBUG00000013782	pabpc4	97	70.782	Eptatretus_burgeri
ENSPMAG00000007885	pabpc4	99	82.724	ENSEBUG00000000992	pabpc4	97	82.402	Eptatretus_burgeri
ENSPMAG00000007885	pabpc4	100	69.822	ENSEASG00005014119	PABPC4	97	71.311	Equus_asinus_asinus
ENSPMAG00000007885	pabpc4	100	69.822	ENSECAG00000009396	PABPC4	97	71.311	Equus_caballus
ENSPMAG00000007885	pabpc4	98	65.010	ENSEEUG00000002962	PABPC4	96	66.151	Erinaceus_europaeus
ENSPMAG00000007885	pabpc4	99	70.825	ENSELUG00000003195	pabpc4	95	71.869	Esox_lucius
ENSPMAG00000007885	pabpc4	100	69.625	ENSFCAG00000015254	-	95	71.107	Felis_catus
ENSPMAG00000007885	pabpc4	99	72.167	ENSFALG00000000543	PABPC4	97	72.746	Ficedula_albicollis
ENSPMAG00000007885	pabpc4	99	45.756	ENSFDAG00000010581	-	89	45.182	Fukomys_damarensis
ENSPMAG00000007885	pabpc4	100	67.041	ENSFDAG00000020016	-	97	67.505	Fukomys_damarensis
ENSPMAG00000007885	pabpc4	100	73.931	ENSFHEG00000007548	pabpc4	96	75.210	Fundulus_heteroclitus
ENSPMAG00000007885	pabpc4	99	70.683	ENSGMOG00000019025	pabpc4	95	71.605	Gadus_morhua
ENSPMAG00000007885	pabpc4	99	72.600	ENSGALG00000003800	PABPC4	97	72.597	Gallus_gallus
ENSPMAG00000007885	pabpc4	100	76.000	ENSGAFG00000018195	pabpc4	94	85.714	Gambusia_affinis
ENSPMAG00000007885	pabpc4	100	73.523	ENSGACG00000007179	pabpc4	95	74.370	Gasterosteus_aculeatus
ENSPMAG00000007885	pabpc4	99	72.366	ENSGAGG00000001888	PABPC4	97	72.393	Gopherus_agassizii
ENSPMAG00000007885	pabpc4	100	69.822	ENSGGOG00000004002	PABPC4	95	71.311	Gorilla_gorilla
ENSPMAG00000007885	pabpc4	100	73.931	ENSHBUG00000020206	pabpc4	95	74.580	Haplochromis_burtoni
ENSPMAG00000007885	pabpc4	100	70.020	ENSHGLG00000011162	PABPC4	97	71.107	Heterocephalus_glaber_female
ENSPMAG00000007885	pabpc4	100	70.020	ENSHGLG00100001580	PABPC4	97	71.107	Heterocephalus_glaber_male
ENSPMAG00000007885	pabpc4	100	72.505	ENSHCOG00000012694	pabpc4	95	73.529	Hippocampus_comes
ENSPMAG00000007885	pabpc4	98	71.020	ENSIPUG00000016620	pabpc4	96	72.279	Ictalurus_punctatus
ENSPMAG00000007885	pabpc4	100	72.709	ENSSTOG00000010416	PABPC4	97	73.109	Ictidomys_tridecemlineatus
ENSPMAG00000007885	pabpc4	100	67.698	ENSJJAG00000007781	Pabpc4	95	68.463	Jaculus_jaculus
ENSPMAG00000007885	pabpc4	99	73.251	ENSKMAG00000013597	pabpc4	96	73.795	Kryptolebias_marmoratus
ENSPMAG00000007885	pabpc4	99	72.746	ENSLBEG00000013654	pabpc4	95	73.739	Labrus_bergylta
ENSPMAG00000007885	pabpc4	99	72.455	ENSLACG00000011907	PABPC4	97	72.802	Latimeria_chalumnae
ENSPMAG00000007885	pabpc4	99	72.200	ENSLOCG00000001877	pabpc4	96	73.006	Lepisosteus_oculatus
ENSPMAG00000007885	pabpc4	100	72.967	ENSLAFG00000000151	PABPC4	97	73.013	Loxodonta_africana
ENSPMAG00000007885	pabpc4	100	69.822	ENSMFAG00000041481	PABPC4	95	71.311	Macaca_fascicularis
ENSPMAG00000007885	pabpc4	100	66.854	ENSMMUG00000007497	PABPC4	96	67.698	Macaca_mulatta
ENSPMAG00000007885	pabpc4	100	69.822	ENSMNEG00000043054	PABPC4	97	71.311	Macaca_nemestrina
ENSPMAG00000007885	pabpc4	100	69.822	ENSMLEG00000040716	PABPC4	95	71.311	Mandrillus_leucophaeus
ENSPMAG00000007885	pabpc4	100	73.984	ENSMAMG00000010025	pabpc4	97	72.961	Mastacembelus_armatus
ENSPMAG00000007885	pabpc4	100	73.931	ENSMZEG00005006141	pabpc4	95	74.580	Maylandia_zebra
ENSPMAG00000007885	pabpc4	99	69.290	ENSMGAG00000005408	PABPC4	97	69.608	Meleagris_gallopavo
ENSPMAG00000007885	pabpc4	70	85.149	ENSMAUG00000019763	-	61	85.870	Mesocricetus_auratus
ENSPMAG00000007885	pabpc4	63	66.047	ENSMAUG00000001295	-	97	66.047	Mesocricetus_auratus
ENSPMAG00000007885	pabpc4	86	71.801	ENSMICG00000016633	-	98	71.631	Microcebus_murinus
ENSPMAG00000007885	pabpc4	100	68.283	ENSMICG00000036729	-	93	68.333	Microcebus_murinus
ENSPMAG00000007885	pabpc4	99	72.428	ENSMOCG00000006763	Pabpc4	96	72.479	Microtus_ochrogaster
ENSPMAG00000007885	pabpc4	100	71.197	ENSMMOG00000002363	pabpc4	95	72.385	Mola_mola
ENSPMAG00000007885	pabpc4	50	65.385	ENSMODG00000018051	-	85	65.106	Monodelphis_domestica
ENSPMAG00000007885	pabpc4	98	67.954	ENSMODG00000017657	-	97	67.961	Monodelphis_domestica
ENSPMAG00000007885	pabpc4	100	73.834	ENSMALG00000011017	pabpc4	95	74.423	Monopterus_albus
ENSPMAG00000007885	pabpc4	99	66.604	MGP_CAROLIEiJ_G0026435	-	96	67.118	Mus_caroli
ENSPMAG00000007885	pabpc4	99	64.358	MGP_CAROLIEiJ_G0024864	-	92	63.825	Mus_caroli
ENSPMAG00000007885	pabpc4	99	72.245	ENSMUSG00000011257	Pabpc4	95	72.899	Mus_musculus
ENSPMAG00000007885	pabpc4	99	66.417	MGP_PahariEiJ_G0028765	Pabpc4	97	67.311	Mus_pahari
ENSPMAG00000007885	pabpc4	99	61.384	MGP_SPRETEiJ_G0027415	Pabpc4	97	61.914	Mus_spretus
ENSPMAG00000007885	pabpc4	100	66.667	ENSMPUG00000014414	-	96	67.505	Mustela_putorius_furo
ENSPMAG00000007885	pabpc4	96	42.589	ENSMPUG00000006836	-	78	42.589	Mustela_putorius_furo
ENSPMAG00000007885	pabpc4	99	72.597	ENSMLUG00000012068	PABPC4	95	72.899	Myotis_lucifugus
ENSPMAG00000007885	pabpc4	100	72.857	ENSNGAG00000018292	Pabpc4	95	72.899	Nannospalax_galili
ENSPMAG00000007885	pabpc4	53	78.916	ENSNBRG00000010047	-	71	78.916	Neolamprologus_brichardi
ENSPMAG00000007885	pabpc4	100	69.822	ENSNLEG00000011928	PABPC4	95	71.311	Nomascus_leucogenys
ENSPMAG00000007885	pabpc4	81	85.714	ENSOPRG00000011984	PABPC4	84	85.714	Ochotona_princeps
ENSPMAG00000007885	pabpc4	99	64.596	ENSODEG00000017434	-	96	64.819	Octodon_degus
ENSPMAG00000007885	pabpc4	100	71.748	ENSODEG00000006592	-	97	71.908	Octodon_degus
ENSPMAG00000007885	pabpc4	100	73.931	ENSONIG00000008176	pabpc4	95	74.580	Oreochromis_niloticus
ENSPMAG00000007885	pabpc4	99	72.366	ENSOANG00000010001	PABPC4	97	72.393	Ornithorhynchus_anatinus
ENSPMAG00000007885	pabpc4	95	66.208	ENSOCUG00000000562	PABPC4	88	67.061	Oryctolagus_cuniculus
ENSPMAG00000007885	pabpc4	99	73.101	ENSORLG00000017479	pabpc4	95	74.160	Oryzias_latipes
ENSPMAG00000007885	pabpc4	99	72.541	ENSORLG00020018644	pabpc4	95	74.160	Oryzias_latipes_hni
ENSPMAG00000007885	pabpc4	99	72.895	ENSORLG00015015042	pabpc4	95	73.950	Oryzias_latipes_hsok
ENSPMAG00000007885	pabpc4	99	73.006	ENSOMEG00000014410	pabpc4	95	74.790	Oryzias_melastigma
ENSPMAG00000007885	pabpc4	100	69.439	ENSOGAG00000004067	PABPC4	96	69.522	Otolemur_garnettii
ENSPMAG00000007885	pabpc4	100	66.479	ENSOARG00000020060	PABPC4	96	67.311	Ovis_aries
ENSPMAG00000007885	pabpc4	100	69.822	ENSPPAG00000043625	PABPC4	95	71.311	Pan_paniscus
ENSPMAG00000007885	pabpc4	100	69.625	ENSPPRG00000024727	PABPC4	95	71.107	Panthera_pardus
ENSPMAG00000007885	pabpc4	100	69.625	ENSPTIG00000005829	PABPC4	95	71.107	Panthera_tigris_altaica
ENSPMAG00000007885	pabpc4	100	69.822	ENSPTRG00000000573	PABPC4	95	71.311	Pan_troglodytes
ENSPMAG00000007885	pabpc4	100	69.625	ENSPANG00000009484	PABPC4	97	71.107	Papio_anubis
ENSPMAG00000007885	pabpc4	99	71.487	ENSPKIG00000025356	pabpc4	97	70.686	Paramormyrops_kingsleyae
ENSPMAG00000007885	pabpc4	99	72.366	ENSPSIG00000016892	PABPC4	97	72.393	Pelodiscus_sinensis
ENSPMAG00000007885	pabpc4	100	70.408	ENSPMGG00000009073	pabpc4	95	71.008	Periophthalmus_magnuspinnatus
ENSPMAG00000007885	pabpc4	99	66.864	ENSPEMG00000024193	-	95	67.821	Peromyscus_maniculatus_bairdii
ENSPMAG00000007885	pabpc4	99	69.368	ENSPEMG00000023569	-	95	70.697	Peromyscus_maniculatus_bairdii
ENSPMAG00000007885	pabpc4	98	75.385	ENSPCIG00000020674	PABPC4	95	75.153	Phascolarctos_cinereus
ENSPMAG00000007885	pabpc4	100	72.912	ENSPFOG00000002682	pabpc4	96	74.580	Poecilia_formosa
ENSPMAG00000007885	pabpc4	100	72.709	ENSPLAG00000010112	pabpc4	96	74.370	Poecilia_latipinna
ENSPMAG00000007885	pabpc4	99	73.045	ENSPMEG00000019739	pabpc4	98	73.265	Poecilia_mexicana
ENSPMAG00000007885	pabpc4	99	72.951	ENSPREG00000001589	pabpc4	96	74.580	Poecilia_reticulata
ENSPMAG00000007885	pabpc4	100	66.854	ENSPPYG00000001506	PABPC4	96	67.698	Pongo_abelii
ENSPMAG00000007885	pabpc4	100	61.754	ENSPCAG00000003341	PABPC4	97	62.428	Procavia_capensis
ENSPMAG00000007885	pabpc4	100	69.685	ENSPCOG00000023725	-	95	71.311	Propithecus_coquereli
ENSPMAG00000007885	pabpc4	100	71.168	ENSPCOG00000025882	-	82	71.168	Propithecus_coquereli
ENSPMAG00000007885	pabpc4	100	67.481	ENSPVAG00000002187	PABPC4	97	67.505	Pteropus_vampyrus
ENSPMAG00000007885	pabpc4	100	73.931	ENSPNYG00000006134	pabpc4	95	74.580	Pundamilia_nyererei
ENSPMAG00000007885	pabpc4	99	72.414	ENSPNAG00000024355	pabpc4	96	72.973	Pygocentrus_nattereri
ENSPMAG00000007885	pabpc4	99	68.472	ENSRNOG00000015642	Pabpc4	95	69.461	Rattus_norvegicus
ENSPMAG00000007885	pabpc4	99	67.118	ENSRNOG00000028592	AABR07035074.1	95	68.064	Rattus_norvegicus
ENSPMAG00000007885	pabpc4	100	69.822	ENSRBIG00000039761	PABPC4	95	71.311	Rhinopithecus_bieti
ENSPMAG00000007885	pabpc4	100	69.822	ENSRROG00000033355	PABPC4	95	71.311	Rhinopithecus_roxellana
ENSPMAG00000007885	pabpc4	100	69.231	ENSSBOG00000026193	PABPC4	95	70.697	Saimiri_boliviensis_boliviensis
ENSPMAG00000007885	pabpc4	98	71.805	ENSSHAG00000018139	PABPC4	97	71.984	Sarcophilus_harrisii
ENSPMAG00000007885	pabpc4	99	71.856	ENSSFOG00015023514	pabpc4	95	72.279	Scleropages_formosus
ENSPMAG00000007885	pabpc4	99	74.385	ENSSMAG00000009007	pabpc4	95	75.000	Scophthalmus_maximus
ENSPMAG00000007885	pabpc4	100	73.116	ENSSDUG00000012683	pabpc4	95	74.370	Seriola_dumerili
ENSPMAG00000007885	pabpc4	100	73.116	ENSSLDG00000013025	pabpc4	95	74.370	Seriola_lalandi_dorsalis
ENSPMAG00000007885	pabpc4	100	66.292	ENSSARG00000000310	PABPC4	91	66.925	Sorex_araneus
ENSPMAG00000007885	pabpc4	99	73.038	ENSSPUG00000003204	PABPC4	97	73.292	Sphenodon_punctatus
ENSPMAG00000007885	pabpc4	100	73.523	ENSSPAG00000009252	pabpc4	95	74.370	Stegastes_partitus
ENSPMAG00000007885	pabpc4	100	69.625	ENSSSCG00000003660	-	95	71.107	Sus_scrofa
ENSPMAG00000007885	pabpc4	99	37.014	ENSSSCG00000036170	-	81	37.474	Sus_scrofa
ENSPMAG00000007885	pabpc4	99	67.978	ENSTGUG00000001266	PABPC4	97	68.786	Taeniopygia_guttata
ENSPMAG00000007885	pabpc4	99	73.868	ENSTRUG00000005907	pabpc4	95	74.160	Takifugu_rubripes
ENSPMAG00000007885	pabpc4	99	68.712	ENSTNIG00000016902	pabpc4	95	68.685	Tetraodon_nigroviridis
ENSPMAG00000007885	pabpc4	99	61.985	ENSTBEG00000009035	PABPC4	86	62.209	Tupaia_belangeri
ENSPMAG00000007885	pabpc4	99	54.562	ENSTTRG00000014340	PABPC4	97	55.000	Tursiops_truncatus
ENSPMAG00000007885	pabpc4	100	69.625	ENSUAMG00000000303	PABPC4	97	71.311	Ursus_americanus
ENSPMAG00000007885	pabpc4	100	73.313	ENSUMAG00000019585	PABPC4	95	73.313	Ursus_maritimus
ENSPMAG00000007885	pabpc4	62	78.061	ENSVPAG00000010041	PABPC4	53	78.061	Vicugna_pacos
ENSPMAG00000007885	pabpc4	100	69.625	ENSVVUG00000005215	PABPC4	95	71.107	Vulpes_vulpes
ENSPMAG00000007885	pabpc4	99	69.679	ENSXETG00000010946	pabpc4	97	70.902	Xenopus_tropicalis
ENSPMAG00000007885	pabpc4	50	32.673	ENSXETG00000027221	-	97	32.673	Xenopus_tropicalis
ENSPMAG00000007885	pabpc4	100	76.000	ENSXCOG00000013190	pabpc4	96	84.038	Xiphophorus_couchianus
ENSPMAG00000007885	pabpc4	100	73.320	ENSXMAG00000019007	pabpc4	96	74.580	Xiphophorus_maculatus