EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000008279 (Gene tree)
Gene ID: -
Gene Symbol: sfswap
Alias: -
Full Name: splicing factor SWAP
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 25639 bases
Position: chrGL479827:1330-26968
Accession: ZDB-GENE-040426-931
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000009123	DRY_EERY	PF09750.9	9e-32	1	1
ENSPMAP00000009121	DRY_EERY	PF09750.9	9.3e-32	1	1
ENSPMAP00000009123	Surp	PF01805.20	1.1e-23	1	2
ENSPMAP00000009123	Surp	PF01805.20	1.1e-23	2	2
ENSPMAP00000009121	Surp	PF01805.20	1.1e-23	1	2
ENSPMAP00000009121	Surp	PF01805.20	1.1e-23	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000009160	-	1377	-	ENSPMAP00000009121	459 (aa)	-	S4RV81
ENSPMAT00000009162	-	1350	-	ENSPMAP00000009123	450 (aa)	-	S4RV83

Gene Model

Click here to download ENSPMAG00000008279's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000008279's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000008279	sfswap	77	62.535	ENSG00000061936	SFSWAP	71	77.907	Homo_sapiens
ENSPMAG00000008279	sfswap	99	54.545	ENSATEG00000021053	sfswap	50	54.060	Anabas_testudineus
ENSPMAG00000008279	sfswap	99	54.241	ENSACLG00000020159	sfswap	50	52.258	Astatotilapia_calliptera
ENSPMAG00000008279	sfswap	99	58.022	ENSBTAG00000000439	SFSWAP	51	57.451	Bos_taurus
ENSPMAG00000008279	sfswap	99	54.329	ENSCJAG00000003613	SFSWAP	51	57.974	Callithrix_jacchus
ENSPMAG00000008279	sfswap	59	36.000	ENSCING00000013950	-	100	37.132	Ciona_intestinalis
ENSPMAG00000008279	sfswap	62	36.491	ENSCSAVG00000008698	-	73	35.789	Ciona_savignyi
ENSPMAG00000008279	sfswap	59	43.284	FBgn0003638	su(w[a])	59	56.250	Drosophila_melanogaster
ENSPMAG00000008279	sfswap	98	51.982	ENSELUG00000010942	sfswap	62	50.759	Esox_lucius
ENSPMAG00000008279	sfswap	69	55.161	ENSFHEG00000011149	-	86	55.414	Fundulus_heteroclitus
ENSPMAG00000008279	sfswap	99	53.219	ENSGAFG00000006272	sfswap	50	52.903	Gambusia_affinis
ENSPMAG00000008279	sfswap	99	54.286	ENSGACG00000017647	sfswap	53	53.728	Gasterosteus_aculeatus
ENSPMAG00000008279	sfswap	99	54.095	ENSLBEG00000010239	sfswap	51	53.448	Labrus_bergylta
ENSPMAG00000008279	sfswap	77	61.389	ENSLOCG00000006202	sfswap	50	54.564	Lepisosteus_oculatus
ENSPMAG00000008279	sfswap	63	60.071	ENSMMOG00000021053	-	76	59.717	Mola_mola
ENSPMAG00000008279	sfswap	99	53.488	ENSMALG00000012603	sfswap	52	51.277	Monopterus_albus
ENSPMAG00000008279	sfswap	77	62.535	MGP_CAROLIEiJ_G0027780	Sfswap	71	75.581	Mus_caroli
ENSPMAG00000008279	sfswap	77	62.535	ENSMUSG00000029439	Sfswap	71	75.581	Mus_musculus
ENSPMAG00000008279	sfswap	77	62.535	MGP_PahariEiJ_G0024360	Sfswap	71	75.581	Mus_pahari
ENSPMAG00000008279	sfswap	77	62.535	MGP_SPRETEiJ_G0028779	Sfswap	71	75.581	Mus_spretus
ENSPMAG00000008279	sfswap	99	56.923	ENSMLUG00000011296	SFSWAP	51	56.833	Myotis_lucifugus
ENSPMAG00000008279	sfswap	77	62.535	ENSOGAG00000016724	SFSWAP	54	57.174	Otolemur_garnettii
ENSPMAG00000008279	sfswap	77	62.535	ENSPPAG00000036706	SFSWAP	50	58.099	Pan_paniscus
ENSPMAG00000008279	sfswap	77	62.535	ENSPTRG00000005640	SFSWAP	50	58.099	Pan_troglodytes
ENSPMAG00000008279	sfswap	99	56.388	ENSPCAG00000004977	-	54	57.050	Procavia_capensis
ENSPMAG00000008279	sfswap	77	62.254	ENSRNOG00000000931	Sfswap	50	57.792	Rattus_norvegicus
ENSPMAG00000008279	sfswap	77	62.817	ENSRBIG00000036330	SFSWAP	50	56.484	Rhinopithecus_bieti
ENSPMAG00000008279	sfswap	99	56.291	ENSSBOG00000026217	SFSWAP	53	57.974	Saimiri_boliviensis_boliviensis
ENSPMAG00000008279	sfswap	65	54.730	ENSTNIG00000006156	-	92	55.405	Tetraodon_nigroviridis
ENSPMAG00000008279	sfswap	99	56.344	ENSXETG00000009350	sfswap	60	56.250	Xenopus_tropicalis
ENSPMAG00000008279	sfswap	63	64.789	ENSXCOG00000005131	sfswap	78	65.845	Xiphophorus_couchianus