EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000008633 (Gene tree)
Gene ID: -
Gene Symbol: rbm42
Alias: -
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 8323 bases
Position: chrGL483824:5529-13851
Accession: ZDB-GENE-040809-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000009508	RRM_1	PF00076.22	2.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000009548	-	1063	-	ENSPMAP00000009508	339 (aa)	-	S4RWB8

Gene Model

Click here to download ENSPMAG00000008633's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000008633's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000008633	rbm42	100	49.206	ENSAPOG00000015109	rbm42	52	57.078	Acanthochromis_polyacanthus
ENSPMAG00000008633	rbm42	97	43.980	ENSACIG00000010771	rbm42	54	58.036	Amphilophus_citrinellus
ENSPMAG00000008633	rbm42	100	48.711	ENSAOCG00000008873	rbm42	52	54.386	Amphiprion_ocellaris
ENSPMAG00000008633	rbm42	100	48.711	ENSAPEG00000012051	rbm42	51	54.386	Amphiprion_percula
ENSPMAG00000008633	rbm42	100	49.062	ENSATEG00000000536	rbm42	53	57.207	Anabas_testudineus
ENSPMAG00000008633	rbm42	100	49.593	ENSACLG00000004988	rbm42	54	55.605	Astatotilapia_calliptera
ENSPMAG00000008633	rbm42	100	49.490	ENSAMXG00000016545	rbm42	56	55.856	Astyanax_mexicanus
ENSPMAG00000008633	rbm42	100	47.849	ENSCVAG00000015589	rbm42	52	53.540	Cyprinodon_variegatus
ENSPMAG00000008633	rbm42	100	48.936	ENSDARG00000039910	rbm42	53	56.502	Danio_rerio
ENSPMAG00000008633	rbm42	100	47.959	ENSELUG00000022403	rbm42	52	55.804	Esox_lucius
ENSPMAG00000008633	rbm42	60	56.780	ENSFHEG00000006764	rbm42	71	55.310	Fundulus_heteroclitus
ENSPMAG00000008633	rbm42	60	53.191	ENSGMOG00000012660	rbm42	52	53.333	Gadus_morhua
ENSPMAG00000008633	rbm42	67	54.264	ENSGAFG00000009059	rbm42	69	55.760	Gambusia_affinis
ENSPMAG00000008633	rbm42	100	51.351	ENSGACG00000004170	rbm42	64	55.000	Gasterosteus_aculeatus
ENSPMAG00000008633	rbm42	100	49.593	ENSHBUG00000011141	rbm42	54	55.605	Haplochromis_burtoni
ENSPMAG00000008633	rbm42	100	48.518	ENSHCOG00000021214	rbm42	52	56.542	Hippocampus_comes
ENSPMAG00000008633	rbm42	100	49.485	ENSIPUG00000022365	rbm42	52	57.848	Ictalurus_punctatus
ENSPMAG00000008633	rbm42	88	47.892	ENSKMAG00000015287	rbm42	51	57.143	Kryptolebias_marmoratus
ENSPMAG00000008633	rbm42	100	49.862	ENSLBEG00000017547	rbm42	52	57.604	Labrus_bergylta
ENSPMAG00000008633	rbm42	98	49.157	ENSLBEG00000004578	-	59	57.604	Labrus_bergylta
ENSPMAG00000008633	rbm42	99	51.366	ENSLOCG00000003368	rbm42	52	55.603	Lepisosteus_oculatus
ENSPMAG00000008633	rbm42	100	49.600	ENSMAMG00000006708	rbm42	53	58.559	Mastacembelus_armatus
ENSPMAG00000008633	rbm42	100	49.593	ENSMZEG00005025234	rbm42	54	55.605	Maylandia_zebra
ENSPMAG00000008633	rbm42	100	50.667	ENSMALG00000015720	rbm42	58	57.207	Monopterus_albus
ENSPMAG00000008633	rbm42	100	49.067	ENSONIG00000008029	rbm42	53	56.054	Oreochromis_niloticus
ENSPMAG00000008633	rbm42	100	48.257	ENSORLG00015000659	rbm42	52	57.604	Oryzias_latipes_hsok
ENSPMAG00000008633	rbm42	60	58.150	ENSOMEG00000014332	rbm42	80	56.682	Oryzias_melastigma
ENSPMAG00000008633	rbm42	100	52.162	ENSPKIG00000015165	rbm42	53	58.108	Paramormyrops_kingsleyae
ENSPMAG00000008633	rbm42	100	47.668	ENSPFOG00000007701	rbm42	57	52.991	Poecilia_formosa
ENSPMAG00000008633	rbm42	100	47.668	ENSPLAG00000009405	rbm42	57	52.991	Poecilia_latipinna
ENSPMAG00000008633	rbm42	100	48.698	ENSPMEG00000010375	rbm42	53	54.185	Poecilia_mexicana
ENSPMAG00000008633	rbm42	100	47.409	ENSPREG00000018102	rbm42	60	52.361	Poecilia_reticulata
ENSPMAG00000008633	rbm42	100	49.593	ENSPNYG00000014460	rbm42	54	55.605	Pundamilia_nyererei
ENSPMAG00000008633	rbm42	100	51.143	ENSPNAG00000009961	rbm42	51	61.722	Pygocentrus_nattereri
ENSPMAG00000008633	rbm42	100	47.315	ENSSFOG00015019227	rbm42	53	56.757	Scleropages_formosus
ENSPMAG00000008633	rbm42	100	47.244	ENSSMAG00000011935	rbm42	52	53.448	Scophthalmus_maximus
ENSPMAG00000008633	rbm42	100	49.733	ENSSDUG00000004033	rbm42	53	53.247	Seriola_dumerili
ENSPMAG00000008633	rbm42	62	56.838	ENSSLDG00000009918	rbm42	58	55.856	Seriola_lalandi_dorsalis
ENSPMAG00000008633	rbm42	100	49.206	ENSSPAG00000019871	rbm42	52	57.078	Stegastes_partitus
ENSPMAG00000008633	rbm42	100	48.541	ENSXETG00000017599	rbm42	51	58.216	Xenopus_tropicalis
ENSPMAG00000008633	rbm42	100	48.042	ENSXMAG00000012827	rbm42	61	51.271	Xiphophorus_maculatus