EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000009667 (Gene tree)
Gene ID: -
Gene Symbol: ptcd1
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 6491 bases
Position: chrGL476557:313233-319723
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000010634	PPR	PF01535.20	2e-19	1	3
ENSPMAP00000010634	PPR	PF01535.20	2e-19	2	3
ENSPMAP00000010634	PPR	PF01535.20	2e-19	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000010680	-	1548	-	ENSPMAP00000010634	516 (aa)	-	S4RZJ3

Gene Model

Click here to download ENSPMAG00000009667's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000009667's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000009667	ptcd1	99	41.333	ENSG00000106246	PTCD1	73	41.333	Homo_sapiens
ENSPMAG00000009667	ptcd1	99	41.333	ENSG00000248919	ATP5MF-PTCD1	68	41.333	Homo_sapiens
ENSPMAG00000009667	ptcd1	99	38.178	ENSAPOG00000010679	ptcd1	77	38.178	Acanthochromis_polyacanthus
ENSPMAG00000009667	ptcd1	100	42.337	ENSAMEG00000006224	-	68	42.337	Ailuropoda_melanoleuca
ENSPMAG00000009667	ptcd1	100	41.346	ENSACIG00000017861	ptcd1	72	41.346	Amphilophus_citrinellus
ENSPMAG00000009667	ptcd1	96	38.235	ENSAOCG00000022617	ptcd1	73	38.235	Amphiprion_ocellaris
ENSPMAG00000009667	ptcd1	100	39.171	ENSAOCG00000020741	-	71	39.171	Amphiprion_ocellaris
ENSPMAG00000009667	ptcd1	100	39.015	ENSAPEG00000022632	ptcd1	71	39.015	Amphiprion_percula
ENSPMAG00000009667	ptcd1	100	41.188	ENSATEG00000007016	ptcd1	70	41.279	Anabas_testudineus
ENSPMAG00000009667	ptcd1	100	42.912	ENSAPLG00000006862	-	81	42.912	Anas_platyrhynchos
ENSPMAG00000009667	ptcd1	100	38.095	ENSACAG00000012871	-	68	38.095	Anolis_carolinensis
ENSPMAG00000009667	ptcd1	100	41.379	ENSANAG00000035790	-	75	41.379	Aotus_nancymaae
ENSPMAG00000009667	ptcd1	100	42.967	ENSACLG00000002824	ptcd1	70	42.967	Astatotilapia_calliptera
ENSPMAG00000009667	ptcd1	99	37.705	ENSAMXG00000037292	ptcd1	76	36.673	Astyanax_mexicanus
ENSPMAG00000009667	ptcd1	100	41.651	ENSBTAG00000020440	-	64	42.639	Bos_taurus
ENSPMAG00000009667	ptcd1	100	41.571	ENSCJAG00000015815	-	73	41.571	Callithrix_jacchus
ENSPMAG00000009667	ptcd1	100	42.337	ENSCAFG00000015055	-	68	42.337	Canis_familiaris
ENSPMAG00000009667	ptcd1	100	41.954	ENSCAFG00020014480	-	68	41.954	Canis_lupus_dingo
ENSPMAG00000009667	ptcd1	100	42.912	ENSCHIG00000027000	-	72	42.912	Capra_hircus
ENSPMAG00000009667	ptcd1	100	41.954	ENSTSYG00000029495	-	73	42.366	Carlito_syrichta
ENSPMAG00000009667	ptcd1	100	42.667	ENSCAPG00000014660	-	78	42.667	Cavia_aperea
ENSPMAG00000009667	ptcd1	100	43.810	ENSCPOG00000001780	-	73	43.810	Cavia_porcellus
ENSPMAG00000009667	ptcd1	100	41.635	ENSCCAG00000034025	-	73	41.635	Cebus_capucinus
ENSPMAG00000009667	ptcd1	99	41.524	ENSCATG00000040859	-	73	41.524	Cercocebus_atys
ENSPMAG00000009667	ptcd1	100	44.530	ENSCLAG00000006354	-	73	44.530	Chinchilla_lanigera
ENSPMAG00000009667	ptcd1	95	40.637	ENSCSAG00000017794	-	74	40.275	Chlorocebus_sabaeus
ENSPMAG00000009667	ptcd1	100	40.402	ENSCPBG00000020866	-	72	40.402	Chrysemys_picta_bellii
ENSPMAG00000009667	ptcd1	99	41.143	ENSCANG00000023441	-	73	41.143	Colobus_angolensis_palliatus
ENSPMAG00000009667	ptcd1	100	41.874	ENSCGRG00001023686	Ptcd1	73	41.874	Cricetulus_griseus_chok1gshd
ENSPMAG00000009667	ptcd1	100	41.874	ENSCGRG00000015031	Ptcd1	73	41.874	Cricetulus_griseus_crigri
ENSPMAG00000009667	ptcd1	100	42.776	ENSCSEG00000002378	ptcd1	69	42.776	Cynoglossus_semilaevis
ENSPMAG00000009667	ptcd1	100	39.810	ENSCVAG00000003621	ptcd1	76	39.810	Cyprinodon_variegatus
ENSPMAG00000009667	ptcd1	100	40.000	ENSCVAG00000015826	ptcd1	72	40.000	Cyprinodon_variegatus
ENSPMAG00000009667	ptcd1	100	39.655	ENSDARG00000076176	ptcd1	74	40.421	Danio_rerio
ENSPMAG00000009667	ptcd1	100	42.418	ENSDNOG00000009957	-	72	42.256	Dasypus_novemcinctus
ENSPMAG00000009667	ptcd1	100	41.874	ENSDORG00000000740	Ptcd1	74	41.874	Dipodomys_ordii
ENSPMAG00000009667	ptcd1	99	36.786	ENSEBUG00000014515	ptcd1	93	34.806	Eptatretus_burgeri
ENSPMAG00000009667	ptcd1	100	41.794	ENSEASG00005002480	-	72	42.286	Equus_asinus_asinus
ENSPMAG00000009667	ptcd1	100	41.603	ENSECAG00000016617	-	74	41.346	Equus_caballus
ENSPMAG00000009667	ptcd1	99	39.344	ENSELUG00000016517	ptcd1	72	39.344	Esox_lucius
ENSPMAG00000009667	ptcd1	100	41.346	ENSFCAG00000015069	-	73	41.923	Felis_catus
ENSPMAG00000009667	ptcd1	100	42.322	ENSFALG00000013803	-	74	42.322	Ficedula_albicollis
ENSPMAG00000009667	ptcd1	100	42.885	ENSFDAG00000006393	-	73	43.487	Fukomys_damarensis
ENSPMAG00000009667	ptcd1	100	42.115	ENSFHEG00000012491	ptcd1	87	42.115	Fundulus_heteroclitus
ENSPMAG00000009667	ptcd1	99	40.076	ENSGMOG00000007639	ptcd1	81	40.076	Gadus_morhua
ENSPMAG00000009667	ptcd1	100	41.296	ENSGALG00000004711	-	74	41.296	Gallus_gallus
ENSPMAG00000009667	ptcd1	100	40.655	ENSGAFG00000013175	ptcd1	72	40.655	Gambusia_affinis
ENSPMAG00000009667	ptcd1	100	42.418	ENSGACG00000016607	ptcd1	78	42.418	Gasterosteus_aculeatus
ENSPMAG00000009667	ptcd1	97	39.692	ENSGAGG00000021832	-	76	39.163	Gopherus_agassizii
ENSPMAG00000009667	ptcd1	99	41.333	ENSGGOG00000015123	-	73	41.333	Gorilla_gorilla
ENSPMAG00000009667	ptcd1	100	42.967	ENSHBUG00000018275	ptcd1	70	42.967	Haplochromis_burtoni
ENSPMAG00000009667	ptcd1	100	42.614	ENSHGLG00000017621	-	73	42.614	Heterocephalus_glaber_female
ENSPMAG00000009667	ptcd1	100	42.614	ENSHGLG00100007218	-	73	42.614	Heterocephalus_glaber_male
ENSPMAG00000009667	ptcd1	100	40.655	ENSHCOG00000010784	ptcd1	72	40.655	Hippocampus_comes
ENSPMAG00000009667	ptcd1	100	41.954	ENSSTOG00000001682	-	73	41.954	Ictidomys_tridecemlineatus
ENSPMAG00000009667	ptcd1	100	41.288	ENSJJAG00000000319	Ptcd1	74	42.476	Jaculus_jaculus
ENSPMAG00000009667	ptcd1	100	42.226	ENSKMAG00000008708	ptcd1	70	42.226	Kryptolebias_marmoratus
ENSPMAG00000009667	ptcd1	100	40.190	ENSLBEG00000008061	ptcd1	70	40.381	Labrus_bergylta
ENSPMAG00000009667	ptcd1	100	41.667	ENSLACG00000011172	ptcd1	73	41.667	Latimeria_chalumnae
ENSPMAG00000009667	ptcd1	100	39.731	ENSLOCG00000004833	ptcd1	81	39.731	Lepisosteus_oculatus
ENSPMAG00000009667	ptcd1	100	42.125	ENSLAFG00000002588	-	73	42.125	Loxodonta_africana
ENSPMAG00000009667	ptcd1	99	41.333	ENSMFAG00000041324	-	73	41.333	Macaca_fascicularis
ENSPMAG00000009667	ptcd1	99	41.143	ENSMMUG00000030408	-	73	41.143	Macaca_mulatta
ENSPMAG00000009667	ptcd1	99	41.524	ENSMNEG00000043786	-	73	41.524	Macaca_nemestrina
ENSPMAG00000009667	ptcd1	99	52.033	ENSMLEG00000031179	-	69	52.033	Mandrillus_leucophaeus
ENSPMAG00000009667	ptcd1	100	42.035	ENSMAMG00000007623	ptcd1	70	42.035	Mastacembelus_armatus
ENSPMAG00000009667	ptcd1	100	42.775	ENSMZEG00005012722	ptcd1	70	42.775	Maylandia_zebra
ENSPMAG00000009667	ptcd1	100	42.366	ENSMGAG00000004211	-	68	42.366	Meleagris_gallopavo
ENSPMAG00000009667	ptcd1	100	40.727	ENSMICG00000017428	-	73	41.412	Microcebus_murinus
ENSPMAG00000009667	ptcd1	100	40.454	ENSMMOG00000020243	ptcd1	78	40.454	Mola_mola
ENSPMAG00000009667	ptcd1	100	40.000	ENSMODG00000001350	-	72	40.000	Monodelphis_domestica
ENSPMAG00000009667	ptcd1	99	42.389	ENSMALG00000018442	ptcd1	70	42.389	Monopterus_albus
ENSPMAG00000009667	ptcd1	100	42.004	MGP_CAROLIEiJ_G0028011	Ptcd1	74	42.004	Mus_caroli
ENSPMAG00000009667	ptcd1	100	42.115	ENSMUSG00000029624	Ptcd1	74	42.115	Mus_musculus
ENSPMAG00000009667	ptcd1	100	41.426	MGP_PahariEiJ_G0024580	Ptcd1	74	41.426	Mus_pahari
ENSPMAG00000009667	ptcd1	100	42.115	MGP_SPRETEiJ_G0029012	Ptcd1	74	42.115	Mus_spretus
ENSPMAG00000009667	ptcd1	100	42.639	ENSMPUG00000016518	-	73	43.021	Mustela_putorius_furo
ENSPMAG00000009667	ptcd1	100	42.256	ENSMLUG00000010994	-	68	42.315	Myotis_lucifugus
ENSPMAG00000009667	ptcd1	100	42.775	ENSNBRG00000010079	ptcd1	72	42.775	Neolamprologus_brichardi
ENSPMAG00000009667	ptcd1	99	40.649	ENSNLEG00000011060	-	86	40.649	Nomascus_leucogenys
ENSPMAG00000009667	ptcd1	100	39.810	ENSMEUG00000006930	-	74	39.810	Notamacropus_eugenii
ENSPMAG00000009667	ptcd1	85	62.500	ENSOPRG00000013647	-	63	62.500	Ochotona_princeps
ENSPMAG00000009667	ptcd1	100	41.524	ENSONIG00000003168	ptcd1	82	41.524	Oreochromis_niloticus
ENSPMAG00000009667	ptcd1	96	39.539	ENSOANG00000007728	-	65	39.539	Ornithorhynchus_anatinus
ENSPMAG00000009667	ptcd1	100	43.295	ENSOCUG00000010584	-	72	43.295	Oryctolagus_cuniculus
ENSPMAG00000009667	ptcd1	100	41.874	ENSORLG00000009275	ptcd1	73	41.874	Oryzias_latipes
ENSPMAG00000009667	ptcd1	100	41.491	ENSORLG00020000988	ptcd1	74	41.491	Oryzias_latipes_hni
ENSPMAG00000009667	ptcd1	100	41.109	ENSORLG00015010557	ptcd1	74	41.109	Oryzias_latipes_hsok
ENSPMAG00000009667	ptcd1	100	42.065	ENSOMEG00000020627	ptcd1	75	42.065	Oryzias_melastigma
ENSPMAG00000009667	ptcd1	100	40.727	ENSOGAG00000010877	-	74	40.918	Otolemur_garnettii
ENSPMAG00000009667	ptcd1	100	39.775	ENSOARG00000018676	-	73	39.775	Ovis_aries
ENSPMAG00000009667	ptcd1	99	41.603	ENSPPAG00000036024	-	73	41.603	Pan_paniscus
ENSPMAG00000009667	ptcd1	100	41.874	ENSPPRG00000003478	-	74	41.874	Panthera_pardus
ENSPMAG00000009667	ptcd1	99	41.524	ENSPTRG00000019452	-	73	41.524	Pan_troglodytes
ENSPMAG00000009667	ptcd1	99	41.714	ENSPANG00000016730	-	73	41.714	Papio_anubis
ENSPMAG00000009667	ptcd1	100	43.103	ENSPKIG00000014215	ptcd1	74	43.103	Paramormyrops_kingsleyae
ENSPMAG00000009667	ptcd1	96	39.010	ENSPSIG00000011184	-	87	39.080	Pelodiscus_sinensis
ENSPMAG00000009667	ptcd1	100	39.552	ENSPCIG00000024778	-	72	39.552	Phascolarctos_cinereus
ENSPMAG00000009667	ptcd1	99	40.927	ENSPFOG00000004458	ptcd1	71	40.927	Poecilia_formosa
ENSPMAG00000009667	ptcd1	99	41.120	ENSPLAG00000011051	ptcd1	71	41.120	Poecilia_latipinna
ENSPMAG00000009667	ptcd1	99	41.618	ENSPMEG00000020547	ptcd1	71	41.618	Poecilia_mexicana
ENSPMAG00000009667	ptcd1	100	41.233	ENSPREG00000000059	ptcd1	72	41.233	Poecilia_reticulata
ENSPMAG00000009667	ptcd1	99	41.524	ENSPPYG00000017377	-	78	41.524	Pongo_abelii
ENSPMAG00000009667	ptcd1	85	64.583	ENSPCAG00000001852	-	69	64.583	Procavia_capensis
ENSPMAG00000009667	ptcd1	100	42.418	ENSPCOG00000018596	-	73	42.720	Propithecus_coquereli
ENSPMAG00000009667	ptcd1	100	42.775	ENSPNYG00000019993	ptcd1	70	42.775	Pundamilia_nyererei
ENSPMAG00000009667	ptcd1	100	40.115	ENSPNAG00000014931	ptcd1	77	39.522	Pygocentrus_nattereri
ENSPMAG00000009667	ptcd1	100	41.923	ENSRNOG00000000987	Ptcd1	75	41.923	Rattus_norvegicus
ENSPMAG00000009667	ptcd1	99	41.333	ENSRBIG00000043393	-	73	41.333	Rhinopithecus_bieti
ENSPMAG00000009667	ptcd1	99	41.143	ENSRROG00000036420	-	73	41.143	Rhinopithecus_roxellana
ENSPMAG00000009667	ptcd1	100	41.300	ENSSBOG00000024114	-	73	41.300	Saimiri_boliviensis_boliviensis
ENSPMAG00000009667	ptcd1	100	39.700	ENSSHAG00000011376	-	78	39.665	Sarcophilus_harrisii
ENSPMAG00000009667	ptcd1	100	40.260	ENSSFOG00015007909	ptcd1	71	40.260	Scleropages_formosus
ENSPMAG00000009667	ptcd1	100	41.412	ENSSMAG00000000218	ptcd1	78	41.412	Scophthalmus_maximus
ENSPMAG00000009667	ptcd1	100	43.021	ENSSDUG00000015671	ptcd1	73	43.021	Seriola_dumerili
ENSPMAG00000009667	ptcd1	100	42.639	ENSSLDG00000014261	ptcd1	71	42.639	Seriola_lalandi_dorsalis
ENSPMAG00000009667	ptcd1	100	37.963	ENSSPUG00000003540	-	72	38.148	Sphenodon_punctatus
ENSPMAG00000009667	ptcd1	100	40.417	ENSSPAG00000011049	ptcd1	70	40.909	Stegastes_partitus
ENSPMAG00000009667	ptcd1	100	43.977	ENSSSCG00000007622	-	77	43.977	Sus_scrofa
ENSPMAG00000009667	ptcd1	100	43.269	ENSTGUG00000007563	-	84	43.269	Taeniopygia_guttata
ENSPMAG00000009667	ptcd1	100	40.116	ENSTRUG00000013471	ptcd1	69	40.116	Takifugu_rubripes
ENSPMAG00000009667	ptcd1	100	39.885	ENSTNIG00000008271	ptcd1	74	39.885	Tetraodon_nigroviridis
ENSPMAG00000009667	ptcd1	100	43.536	ENSTBEG00000011021	-	74	43.536	Tupaia_belangeri
ENSPMAG00000009667	ptcd1	100	41.221	ENSTTRG00000003006	-	73	41.221	Tursiops_truncatus
ENSPMAG00000009667	ptcd1	100	41.603	ENSUAMG00000008049	-	73	42.176	Ursus_americanus
ENSPMAG00000009667	ptcd1	100	41.954	ENSVVUG00000008836	-	73	41.954	Vulpes_vulpes
ENSPMAG00000009667	ptcd1	99	39.464	ENSXETG00000009891	ptcd1	74	39.464	Xenopus_tropicalis
ENSPMAG00000009667	ptcd1	100	40.848	ENSXMAG00000015540	ptcd1	71	40.848	Xiphophorus_maculatus