EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMAG00000009733 (Gene tree)
Gene ID: -
Gene Symbol: URB1
Alias: -
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Minus strand
Length: 102067 bases
Position: chrGL476415:454264-556330
Accession: 17344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000010704	Npa1	PF11707.8	4.9e-45	1	1
ENSPMAP00000010702	Npa1	PF11707.8	3.8e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000010750	URB1-201	5259	-	ENSPMAP00000010704	1753 (aa)	-	S4RZR3
ENSPMAT00000010748	URB1-202	5547	-	ENSPMAP00000010702	1849 (aa)	-	S4RZR1

Gene Model

Click here to download ENSPMAG00000009733's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000009733's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000009733	URB1	100	34.139	ENSG00000142207	URB1	73	37.273	Homo_sapiens
ENSPMAG00000009733	URB1	99	32.247	ENSAPOG00000020308	urb1	77	32.101	Acanthochromis_polyacanthus
ENSPMAG00000009733	URB1	99	34.526	ENSAMEG00000011998	URB1	79	34.305	Ailuropoda_melanoleuca
ENSPMAG00000009733	URB1	99	32.269	ENSACIG00000003248	urb1	77	32.289	Amphilophus_citrinellus
ENSPMAG00000009733	URB1	82	37.772	ENSAOCG00000010364	urb1	65	38.260	Amphiprion_ocellaris
ENSPMAG00000009733	URB1	81	38.546	ENSAPEG00000010758	urb1	67	39.021	Amphiprion_percula
ENSPMAG00000009733	URB1	99	33.297	ENSATEG00000011790	urb1	76	32.615	Anabas_testudineus
ENSPMAG00000009733	URB1	99	33.407	ENSAPLG00000012791	URB1	82	32.137	Anas_platyrhynchos
ENSPMAG00000009733	URB1	99	33.437	ENSACAG00000002817	URB1	79	33.108	Anolis_carolinensis
ENSPMAG00000009733	URB1	100	33.927	ENSANAG00000024617	URB1	80	33.876	Aotus_nancymaae
ENSPMAG00000009733	URB1	99	32.761	ENSACLG00000024865	urb1	80	32.590	Astatotilapia_calliptera
ENSPMAG00000009733	URB1	99	32.363	ENSAMXG00000012306	urb1	77	31.910	Astyanax_mexicanus
ENSPMAG00000009733	URB1	100	34.373	ENSCJAG00000009118	URB1	80	34.268	Callithrix_jacchus
ENSPMAG00000009733	URB1	99	34.370	ENSCAFG00000008892	URB1	80	33.757	Canis_familiaris
ENSPMAG00000009733	URB1	99	34.101	ENSCAFG00020025994	-	79	33.015	Canis_lupus_dingo
ENSPMAG00000009733	URB1	99	34.373	ENSCAFG00020025987	-	79	33.386	Canis_lupus_dingo
ENSPMAG00000009733	URB1	99	35.224	ENSCHIG00000015645	URB1	71	36.192	Capra_hircus
ENSPMAG00000009733	URB1	100	33.106	ENSTSYG00000013286	URB1	80	32.897	Carlito_syrichta
ENSPMAG00000009733	URB1	99	32.735	ENSCAPG00000015589	URB1	80	32.417	Cavia_aperea
ENSPMAG00000009733	URB1	99	33.224	ENSCPOG00000006748	URB1	79	32.840	Cavia_porcellus
ENSPMAG00000009733	URB1	100	34.085	ENSCCAG00000021299	URB1	80	33.980	Cebus_capucinus
ENSPMAG00000009733	URB1	100	34.526	ENSCATG00000042630	URB1	73	37.500	Cercocebus_atys
ENSPMAG00000009733	URB1	99	33.785	ENSCLAG00000005262	URB1	69	35.417	Chinchilla_lanigera
ENSPMAG00000009733	URB1	100	34.331	ENSCSAG00000009584	URB1	80	34.406	Chlorocebus_sabaeus
ENSPMAG00000009733	URB1	99	34.407	ENSCPBG00000006454	URB1	80	33.246	Chrysemys_picta_bellii
ENSPMAG00000009733	URB1	100	33.944	ENSCANG00000031088	URB1	80	34.049	Colobus_angolensis_palliatus
ENSPMAG00000009733	URB1	99	35.339	ENSCGRG00001010616	Urb1	80	33.859	Cricetulus_griseus_chok1gshd
ENSPMAG00000009733	URB1	99	35.345	ENSCGRG00000015840	Urb1	81	33.895	Cricetulus_griseus_crigri
ENSPMAG00000009733	URB1	99	32.477	ENSCSEG00000012616	urb1	73	32.353	Cynoglossus_semilaevis
ENSPMAG00000009733	URB1	95	34.036	ENSCVAG00000009076	urb1	88	33.861	Cyprinodon_variegatus
ENSPMAG00000009733	URB1	99	33.078	ENSDARG00000060308	urb1	79	31.562	Danio_rerio
ENSPMAG00000009733	URB1	99	35.104	ENSDNOG00000015586	URB1	90	34.828	Dasypus_novemcinctus
ENSPMAG00000009733	URB1	100	34.035	ENSDORG00000006735	Urb1	71	36.456	Dipodomys_ordii
ENSPMAG00000009733	URB1	93	44.220	ENSETEG00000009080	URB1	75	43.931	Echinops_telfairi
ENSPMAG00000009733	URB1	99	33.661	ENSEASG00005007711	URB1	76	35.754	Equus_asinus_asinus
ENSPMAG00000009733	URB1	99	34.153	ENSECAG00000013206	URB1	76	39.251	Equus_caballus
ENSPMAG00000009733	URB1	79	38.295	ENSELUG00000020516	urb1	78	31.897	Esox_lucius
ENSPMAG00000009733	URB1	99	34.040	ENSFCAG00000002177	URB1	80	33.788	Felis_catus
ENSPMAG00000009733	URB1	99	32.223	ENSFALG00000004636	URB1	74	38.625	Ficedula_albicollis
ENSPMAG00000009733	URB1	99	34.146	ENSFDAG00000007288	URB1	67	36.497	Fukomys_damarensis
ENSPMAG00000009733	URB1	94	44.366	ENSFHEG00000000202	urb1	78	44.718	Fundulus_heteroclitus
ENSPMAG00000009733	URB1	88	36.014	ENSGMOG00000001838	urb1	65	35.902	Gadus_morhua
ENSPMAG00000009733	URB1	99	34.156	ENSGALG00000015887	URB1	80	32.948	Gallus_gallus
ENSPMAG00000009733	URB1	93	38.776	ENSGAFG00000020694	urb1	80	31.792	Gambusia_affinis
ENSPMAG00000009733	URB1	99	32.677	ENSGACG00000011703	urb1	71	34.494	Gasterosteus_aculeatus
ENSPMAG00000009733	URB1	99	33.896	ENSGAGG00000022544	URB1	80	32.617	Gopherus_agassizii
ENSPMAG00000009733	URB1	100	34.296	ENSGGOG00000000285	URB1	75	36.305	Gorilla_gorilla
ENSPMAG00000009733	URB1	99	32.761	ENSHBUG00000001904	urb1	80	32.350	Haplochromis_burtoni
ENSPMAG00000009733	URB1	99	33.103	ENSHGLG00000004907	URB1	71	35.191	Heterocephalus_glaber_female
ENSPMAG00000009733	URB1	99	33.658	ENSHGLG00100010749	URB1	79	32.807	Heterocephalus_glaber_male
ENSPMAG00000009733	URB1	65	40.395	ENSHCOG00000018683	urb1	68	43.149	Hippocampus_comes
ENSPMAG00000009733	URB1	100	32.251	ENSIPUG00000014721	urb1	80	31.847	Ictalurus_punctatus
ENSPMAG00000009733	URB1	99	34.101	ENSSTOG00000004539	URB1	80	33.246	Ictidomys_tridecemlineatus
ENSPMAG00000009733	URB1	99	32.401	ENSKMAG00000006001	urb1	89	30.287	Kryptolebias_marmoratus
ENSPMAG00000009733	URB1	97	37.552	ENSLBEG00000027208	urb1	80	37.037	Labrus_bergylta
ENSPMAG00000009733	URB1	96	34.050	ENSLACG00000017059	URB1	74	33.844	Latimeria_chalumnae
ENSPMAG00000009733	URB1	99	34.048	ENSLOCG00000009190	urb1	77	33.425	Lepisosteus_oculatus
ENSPMAG00000009733	URB1	99	35.336	ENSLAFG00000010407	URB1	80	34.056	Loxodonta_africana
ENSPMAG00000009733	URB1	100	34.278	ENSMFAG00000034391	URB1	70	37.386	Macaca_fascicularis
ENSPMAG00000009733	URB1	100	34.372	ENSMMUG00000010295	URB1	73	37.614	Macaca_mulatta
ENSPMAG00000009733	URB1	100	33.913	ENSMNEG00000032981	URB1	73	36.209	Macaca_nemestrina
ENSPMAG00000009733	URB1	100	34.226	ENSMLEG00000041435	URB1	73	37.500	Mandrillus_leucophaeus
ENSPMAG00000009733	URB1	94	39.620	ENSMAMG00000011238	urb1	76	39.620	Mastacembelus_armatus
ENSPMAG00000009733	URB1	96	32.243	ENSMZEG00005011862	urb1	80	31.709	Maylandia_zebra
ENSPMAG00000009733	URB1	99	33.498	ENSMGAG00000014512	URB1	81	33.001	Meleagris_gallopavo
ENSPMAG00000009733	URB1	90	43.156	ENSMAUG00000010516	Urb1	79	42.776	Mesocricetus_auratus
ENSPMAG00000009733	URB1	99	34.047	ENSMICG00000016424	URB1	80	34.108	Microcebus_murinus
ENSPMAG00000009733	URB1	99	34.400	ENSMOCG00000012613	Urb1	77	34.075	Microtus_ochrogaster
ENSPMAG00000009733	URB1	100	33.882	ENSMODG00000021076	URB1	79	32.241	Monodelphis_domestica
ENSPMAG00000009733	URB1	93	38.121	ENSMALG00000017411	urb1	74	38.038	Monopterus_albus
ENSPMAG00000009733	URB1	100	33.229	MGP_CAROLIEiJ_G0020948	Urb1	77	33.624	Mus_caroli
ENSPMAG00000009733	URB1	100	33.019	ENSMUSG00000039929	Urb1	77	33.333	Mus_musculus
ENSPMAG00000009733	URB1	100	33.108	MGP_PahariEiJ_G0016653	Urb1	77	33.697	Mus_pahari
ENSPMAG00000009733	URB1	100	33.281	MGP_SPRETEiJ_G0021854	Urb1	77	33.515	Mus_spretus
ENSPMAG00000009733	URB1	100	34.523	ENSMPUG00000001123	URB1	80	34.260	Mustela_putorius_furo
ENSPMAG00000009733	URB1	100	33.020	ENSNGAG00000001905	Urb1	77	33.624	Nannospalax_galili
ENSPMAG00000009733	URB1	72	31.567	ENSNBRG00000001049	urb1	66	31.442	Neolamprologus_brichardi
ENSPMAG00000009733	URB1	91	37.185	ENSNLEG00000026872	URB1	73	37.071	Nomascus_leucogenys
ENSPMAG00000009733	URB1	79	57.944	ENSMEUG00000010828	URB1	62	57.944	Notamacropus_eugenii
ENSPMAG00000009733	URB1	100	33.368	ENSOPRG00000013482	URB1	76	36.120	Ochotona_princeps
ENSPMAG00000009733	URB1	99	33.860	ENSODEG00000002587	URB1	71	37.416	Octodon_degus
ENSPMAG00000009733	URB1	100	32.839	ENSONIG00000005599	urb1	80	32.525	Oreochromis_niloticus
ENSPMAG00000009733	URB1	99	34.400	ENSOCUG00000009381	URB1	77	34.060	Oryctolagus_cuniculus
ENSPMAG00000009733	URB1	99	33.078	ENSORLG00000003429	urb1	77	32.256	Oryzias_latipes
ENSPMAG00000009733	URB1	99	33.333	ENSORLG00020013785	urb1	80	32.604	Oryzias_latipes_hni
ENSPMAG00000009733	URB1	99	32.027	ENSORLG00015019421	urb1	81	31.657	Oryzias_latipes_hsok
ENSPMAG00000009733	URB1	79	35.933	ENSOMEG00000002094	urb1	79	35.655	Oryzias_melastigma
ENSPMAG00000009733	URB1	99	34.027	ENSOGAG00000017140	URB1	80	33.634	Otolemur_garnettii
ENSPMAG00000009733	URB1	87	37.304	ENSOARG00000013679	URB1	69	36.686	Ovis_aries
ENSPMAG00000009733	URB1	100	34.191	ENSPPAG00000003423	URB1	75	36.090	Pan_paniscus
ENSPMAG00000009733	URB1	99	34.404	ENSPPRG00000023131	URB1	80	33.948	Panthera_pardus
ENSPMAG00000009733	URB1	99	33.243	ENSPTIG00000016125	URB1	85	32.931	Panthera_tigris_altaica
ENSPMAG00000009733	URB1	100	34.122	ENSPTRG00000013852	URB1	75	35.953	Pan_troglodytes
ENSPMAG00000009733	URB1	100	34.121	ENSPANG00000021964	URB1	73	37.273	Papio_anubis
ENSPMAG00000009733	URB1	99	34.978	ENSPKIG00000003683	urb1	76	34.594	Paramormyrops_kingsleyae
ENSPMAG00000009733	URB1	99	35.035	ENSPEMG00000021205	Urb1	78	33.595	Peromyscus_maniculatus_bairdii
ENSPMAG00000009733	URB1	100	33.059	ENSPCIG00000016350	URB1	81	32.275	Phascolarctos_cinereus
ENSPMAG00000009733	URB1	99	33.297	ENSPLAG00000004371	urb1	80	33.021	Poecilia_latipinna
ENSPMAG00000009733	URB1	99	32.713	ENSPMEG00000006634	urb1	80	32.572	Poecilia_mexicana
ENSPMAG00000009733	URB1	99	33.298	ENSPREG00000013453	urb1	80	33.105	Poecilia_reticulata
ENSPMAG00000009733	URB1	100	34.209	ENSPPYG00000011359	URB1	80	34.249	Pongo_abelii
ENSPMAG00000009733	URB1	95	35.565	ENSPCAG00000007430	URB1	76	35.565	Procavia_capensis
ENSPMAG00000009733	URB1	99	33.966	ENSPCOG00000022695	URB1	80	33.914	Propithecus_coquereli
ENSPMAG00000009733	URB1	100	33.351	ENSPVAG00000000889	URB1	80	33.106	Pteropus_vampyrus
ENSPMAG00000009733	URB1	99	32.589	ENSPNYG00000010589	urb1	80	32.068	Pundamilia_nyererei
ENSPMAG00000009733	URB1	100	32.914	ENSPNAG00000019324	urb1	77	33.352	Pygocentrus_nattereri
ENSPMAG00000009733	URB1	99	33.676	ENSRNOG00000002080	Urb1	77	33.297	Rattus_norvegicus
ENSPMAG00000009733	URB1	100	34.084	ENSRBIG00000033122	URB1	75	36.684	Rhinopithecus_bieti
ENSPMAG00000009733	URB1	100	33.979	ENSRROG00000040237	URB1	75	36.471	Rhinopithecus_roxellana
ENSPMAG00000009733	URB1	100	34.119	ENSSBOG00000027672	URB1	80	34.119	Saimiri_boliviensis_boliviensis
ENSPMAG00000009733	URB1	100	33.205	ENSSHAG00000005140	URB1	79	32.190	Sarcophilus_harrisii
ENSPMAG00000009733	URB1	99	33.425	ENSSFOG00015000339	urb1	82	33.407	Scleropages_formosus
ENSPMAG00000009733	URB1	99	33.333	ENSSMAG00000003782	urb1	80	32.578	Scophthalmus_maximus
ENSPMAG00000009733	URB1	99	33.352	ENSSDUG00000012313	urb1	80	32.561	Seriola_dumerili
ENSPMAG00000009733	URB1	99	33.352	ENSSLDG00000023179	urb1	80	32.613	Seriola_lalandi_dorsalis
ENSPMAG00000009733	URB1	99	33.388	ENSSPUG00000012447	URB1	76	33.333	Sphenodon_punctatus
ENSPMAG00000009733	URB1	99	33.352	ENSSPAG00000006325	urb1	73	35.282	Stegastes_partitus
ENSPMAG00000009733	URB1	99	34.137	ENSSSCG00000032024	URB1	80	33.526	Sus_scrofa
ENSPMAG00000009733	URB1	90	34.445	ENSTGUG00000013442	URB1	95	34.263	Taeniopygia_guttata
ENSPMAG00000009733	URB1	99	32.516	ENSTRUG00000009372	urb1	76	33.247	Takifugu_rubripes
ENSPMAG00000009733	URB1	99	32.090	ENSTNIG00000016277	urb1	78	31.356	Tetraodon_nigroviridis
ENSPMAG00000009733	URB1	87	36.671	ENSTTRG00000007712	URB1	71	36.395	Tursiops_truncatus
ENSPMAG00000009733	URB1	99	34.890	ENSUAMG00000012231	URB1	79	34.215	Ursus_americanus
ENSPMAG00000009733	URB1	94	39.973	ENSUMAG00000017419	URB1	86	39.535	Ursus_maritimus
ENSPMAG00000009733	URB1	59	53.957	ENSVPAG00000001164	URB1	50	53.957	Vicugna_pacos
ENSPMAG00000009733	URB1	99	34.524	ENSVVUG00000000551	URB1	80	33.281	Vulpes_vulpes
ENSPMAG00000009733	URB1	99	35.371	ENSXETG00000009895	urb1	79	33.177	Xenopus_tropicalis
ENSPMAG00000009733	URB1	99	33.333	ENSXCOG00000005500	urb1	81	32.928	Xiphophorus_couchianus
ENSPMAG00000009733	URB1	99	33.092	ENSXMAG00000007253	urb1	81	32.627	Xiphophorus_maculatus