EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMAG00000009884 (Gene tree)
Gene ID: -
Gene Symbol: puf60b
Alias: -
Full Name: poly-U binding splicing factor b
Gene Type: protein_coding
Species: Petromyzon_marinus
Status: putative
Strand: Plus strand
Length: 6222 bases
Position: chrGL483688:3845-10066
Accession: ZDB-GENE-040625-116
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMAP00000010862	RRM_1	PF00076.22	5.1e-31	1	2
ENSPMAP00000010862	RRM_1	PF00076.22	5.1e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMAT00000010908	-	486	-	ENSPMAP00000010862	162 (aa)	-	S4S071

Gene Model

Click here to download ENSPMAG00000009884's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMAG00000009884's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMAG00000009884	puf60b	89	39.583	ENSPMAG00000006529	tia1l	70	39.583
ENSPMAG00000009884	puf60b	80	34.615	ENSPMAG00000000738	-	59	34.615
ENSPMAG00000009884	puf60b	52	33.333	ENSPMAG00000007450	ncbp2	50	33.333
ENSPMAG00000009884	puf60b	90	40.816	ENSPMAG00000008270	HNRNPA2B1	57	40.816

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMAG00000009884	puf60b	100	89.024	ENSG00000179950	PUF60	62	87.117	Homo_sapiens
ENSPMAG00000009884	puf60b	75	88.000	ENSACLG00000016311	-	53	86.842	Astatotilapia_calliptera
ENSPMAG00000009884	puf60b	93	58.228	WBGene00004389	rnp-6	59	56.471	Caenorhabditis_elegans
ENSPMAG00000009884	puf60b	97	67.516	ENSCING00000002156	-	51	67.516	Ciona_intestinalis
ENSPMAG00000009884	puf60b	100	87.117	ENSCANG00000041843	PUF60	50	87.117	Colobus_angolensis_palliatus
ENSPMAG00000009884	puf60b	100	85.276	ENSDARG00000032175	puf60a	81	85.276	Danio_rerio
ENSPMAG00000009884	puf60b	97	84.713	ENSDARG00000001241	puf60b	75	84.713	Danio_rerio
ENSPMAG00000009884	puf60b	100	87.117	ENSGALG00000039901	PUF60	57	87.117	Gallus_gallus
ENSPMAG00000009884	puf60b	97	89.172	ENSLACG00000005456	PUF60	51	89.172	Latimeria_chalumnae
ENSPMAG00000009884	puf60b	100	87.117	ENSMMUG00000013558	PUF60	52	89.844	Macaca_mulatta
ENSPMAG00000009884	puf60b	100	87.117	ENSMGAG00000013070	PUF60	57	87.117	Meleagris_gallopavo
ENSPMAG00000009884	puf60b	100	87.117	ENSMAUG00000014267	-	51	87.117	Mesocricetus_auratus
ENSPMAG00000009884	puf60b	98	85.443	ENSMMOG00000018059	-	65	62.016	Mola_mola
ENSPMAG00000009884	puf60b	100	85.276	ENSNBRG00000013047	puf60b	78	55.844	Neolamprologus_brichardi
ENSPMAG00000009884	puf60b	100	87.117	ENSODEG00000014024	-	50	87.117	Octodon_degus
ENSPMAG00000009884	puf60b	99	84.472	ENSOMEG00000022185	-	51	84.810	Oryzias_melastigma
ENSPMAG00000009884	puf60b	97	87.261	ENSPKIG00000004295	puf60a	56	86.076	Paramormyrops_kingsleyae
ENSPMAG00000009884	puf60b	100	85.276	ENSPREG00000005440	puf60b	52	85.276	Poecilia_reticulata
ENSPMAG00000009884	puf60b	100	87.117	ENSPCAG00000014837	PUF60	50	87.117	Procavia_capensis
ENSPMAG00000009884	puf60b	98	74.214	ENSSPUG00000013518	PUF60	51	74.214	Sphenodon_punctatus
ENSPMAG00000009884	puf60b	96	89.103	ENSTGUG00000016423	-	100	89.103	Taeniopygia_guttata
ENSPMAG00000009884	puf60b	100	84.663	ENSTRUG00000005420	puf60b	53	84.663	Takifugu_rubripes
ENSPMAG00000009884	puf60b	96	89.103	ENSTBEG00000002751	-	62	89.103	Tupaia_belangeri