EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000000258 (Gene tree)
Gene ID: 106910846
Gene Symbol: smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 14177 bases
Position: chrKQ551073.1:650764-664940
Accession: 106910846
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000028164	EST1	PF10374.9	4.8e-12	1	1
ENSPMEP00000028164	EST1_DNA_bind	PF10373.9	5.7e-57	1	1
ENSPMEP00000028164	PIN_4	PF13638.6	5.9e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000031243	-	7504	XM_014977535	ENSPMEP00000028164	1608 (aa)	XP_014833021	UPI00072E7FA6

Gene Model

Click here to download ENSPMEG00000000258's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000000258's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000000258	smg6	74	54.082	ENSG00000070366	SMG6	100	57.143	Homo_sapiens
ENSPMEG00000000258	smg6	100	72.678	ENSAPOG00000019448	smg6	100	73.357	Acanthochromis_polyacanthus
ENSPMEG00000000258	smg6	74	54.545	ENSAMEG00000007632	SMG6	77	56.239	Ailuropoda_melanoleuca
ENSPMEG00000000258	smg6	93	70.863	ENSACIG00000012997	smg6	100	70.882	Amphilophus_citrinellus
ENSPMEG00000000258	smg6	100	73.614	ENSAOCG00000002630	smg6	100	74.353	Amphiprion_ocellaris
ENSPMEG00000000258	smg6	100	73.402	ENSAPEG00000019101	smg6	100	74.141	Amphiprion_percula
ENSPMEG00000000258	smg6	100	70.655	ENSATEG00000006483	smg6	100	70.935	Anabas_testudineus
ENSPMEG00000000258	smg6	62	49.760	ENSACAG00000011783	SMG6	72	53.761	Anolis_carolinensis
ENSPMEG00000000258	smg6	74	54.474	ENSANAG00000035760	SMG6	76	56.801	Aotus_nancymaae
ENSPMEG00000000258	smg6	100	69.958	ENSACLG00000005288	smg6	100	71.613	Astatotilapia_calliptera
ENSPMEG00000000258	smg6	75	66.915	ENSAMXG00000017326	smg6	93	66.791	Astyanax_mexicanus
ENSPMEG00000000258	smg6	74	54.753	ENSBTAG00000000267	SMG6	83	53.894	Bos_taurus
ENSPMEG00000000258	smg6	74	54.496	ENSCJAG00000001820	SMG6	77	56.667	Callithrix_jacchus
ENSPMEG00000000258	smg6	74	54.760	ENSCAFG00000019260	SMG6	77	56.752	Canis_familiaris
ENSPMEG00000000258	smg6	74	54.760	ENSCAFG00020009770	SMG6	77	56.752	Canis_lupus_dingo
ENSPMEG00000000258	smg6	74	54.745	ENSCHIG00000021998	SMG6	83	53.816	Capra_hircus
ENSPMEG00000000258	smg6	74	53.925	ENSTSYG00000003406	SMG6	100	57.273	Carlito_syrichta
ENSPMEG00000000258	smg6	67	52.915	ENSCAPG00000016197	SMG6	68	53.101	Cavia_aperea
ENSPMEG00000000258	smg6	74	53.459	ENSCPOG00000014878	SMG6	89	59.459	Cavia_porcellus
ENSPMEG00000000258	smg6	74	54.317	ENSCCAG00000035801	SMG6	77	56.667	Cebus_capucinus
ENSPMEG00000000258	smg6	74	54.560	ENSCATG00000031956	SMG6	77	56.325	Cercocebus_atys
ENSPMEG00000000258	smg6	74	53.375	ENSCLAG00000006748	SMG6	89	57.965	Chinchilla_lanigera
ENSPMEG00000000258	smg6	74	54.796	ENSCSAG00000013800	SMG6	77	56.752	Chlorocebus_sabaeus
ENSPMEG00000000258	smg6	76	53.846	ENSCPBG00000020369	SMG6	84	53.379	Chrysemys_picta_bellii
ENSPMEG00000000258	smg6	91	48.189	ENSCANG00000031764	SMG6	100	57.505	Colobus_angolensis_palliatus
ENSPMEG00000000258	smg6	74	49.565	ENSCGRG00000007782	Smg6	77	51.757	Cricetulus_griseus_crigri
ENSPMEG00000000258	smg6	100	65.403	ENSCSEG00000012757	smg6	100	66.066	Cynoglossus_semilaevis
ENSPMEG00000000258	smg6	100	83.006	ENSCVAG00000012789	smg6	100	83.190	Cyprinodon_variegatus
ENSPMEG00000000258	smg6	100	57.021	ENSDARG00000100481	smg6	100	56.326	Danio_rerio
ENSPMEG00000000258	smg6	74	53.647	ENSDNOG00000048283	SMG6	76	55.717	Dasypus_novemcinctus
ENSPMEG00000000258	smg6	74	50.980	ENSDORG00000016614	Smg6	87	58.371	Dipodomys_ordii
ENSPMEG00000000258	smg6	83	87.500	ENSETEG00000016790	SMG6	69	87.500	Echinops_telfairi
ENSPMEG00000000258	smg6	59	47.809	ENSEBUG00000005059	smg6	61	47.944	Eptatretus_burgeri
ENSPMEG00000000258	smg6	74	54.203	ENSEASG00005009318	SMG6	76	56.421	Equus_asinus_asinus
ENSPMEG00000000258	smg6	74	54.203	ENSECAG00000006519	SMG6	76	56.421	Equus_caballus
ENSPMEG00000000258	smg6	74	46.493	ENSEEUG00000003493	SMG6	77	47.782	Erinaceus_europaeus
ENSPMEG00000000258	smg6	78	71.429	ENSELUG00000005934	smg6	87	65.022	Esox_lucius
ENSPMEG00000000258	smg6	74	54.232	ENSFCAG00000028817	SMG6	83	53.708	Felis_catus
ENSPMEG00000000258	smg6	83	51.634	ENSFALG00000006538	SMG6	88	53.834	Ficedula_albicollis
ENSPMEG00000000258	smg6	74	53.647	ENSFDAG00000015106	SMG6	82	59.615	Fukomys_damarensis
ENSPMEG00000000258	smg6	100	85.424	ENSFHEG00000013282	smg6	100	86.347	Fundulus_heteroclitus
ENSPMEG00000000258	smg6	77	52.847	ENSGALG00000003108	SMG6	84	53.044	Gallus_gallus
ENSPMEG00000000258	smg6	100	94.386	ENSGAFG00000000379	smg6	100	94.263	Gambusia_affinis
ENSPMEG00000000258	smg6	90	72.210	ENSGACG00000020521	smg6	99	73.074	Gasterosteus_aculeatus
ENSPMEG00000000258	smg6	74	53.865	ENSGAGG00000025617	SMG6	84	53.693	Gopherus_agassizii
ENSPMEG00000000258	smg6	74	54.317	ENSGGOG00000017156	SMG6	77	56.362	Gorilla_gorilla
ENSPMEG00000000258	smg6	100	70.114	ENSHBUG00000021311	smg6	100	71.051	Haplochromis_burtoni
ENSPMEG00000000258	smg6	74	53.840	ENSHGLG00000012882	SMG6	82	61.538	Heterocephalus_glaber_female
ENSPMEG00000000258	smg6	74	53.840	ENSHGLG00100017815	SMG6	82	61.538	Heterocephalus_glaber_male
ENSPMEG00000000258	smg6	66	68.953	ENSHCOG00000008761	smg6	83	69.017	Hippocampus_comes
ENSPMEG00000000258	smg6	100	53.910	ENSIPUG00000012493	smg6	100	53.699	Ictalurus_punctatus
ENSPMEG00000000258	smg6	74	53.937	ENSSTOG00000028127	SMG6	83	59.615	Ictidomys_tridecemlineatus
ENSPMEG00000000258	smg6	54	50.581	ENSJJAG00000015367	Smg6	63	53.771	Jaculus_jaculus
ENSPMEG00000000258	smg6	100	75.121	ENSKMAG00000000279	smg6	100	75.317	Kryptolebias_marmoratus
ENSPMEG00000000258	smg6	100	69.594	ENSLBEG00000002184	smg6	100	69.809	Labrus_bergylta
ENSPMEG00000000258	smg6	67	64.611	ENSLOCG00000006448	smg6	100	55.364	Lepisosteus_oculatus
ENSPMEG00000000258	smg6	74	53.281	ENSLAFG00000001261	SMG6	77	55.812	Loxodonta_africana
ENSPMEG00000000258	smg6	74	54.796	ENSMFAG00000003394	SMG6	77	56.752	Macaca_fascicularis
ENSPMEG00000000258	smg6	74	54.717	ENSMMUG00000023161	SMG6	77	56.667	Macaca_mulatta
ENSPMEG00000000258	smg6	74	51.884	ENSMNEG00000044592	SMG6	76	53.669	Macaca_nemestrina
ENSPMEG00000000258	smg6	87	59.298	ENSMLEG00000029353	SMG6	77	58.988	Mandrillus_leucophaeus
ENSPMEG00000000258	smg6	100	69.892	ENSMAMG00000020119	smg6	100	71.576	Mastacembelus_armatus
ENSPMEG00000000258	smg6	100	69.737	ENSMZEG00005024736	smg6	100	70.729	Maylandia_zebra
ENSPMEG00000000258	smg6	53	49.615	ENSMGAG00000005401	-	81	50.055	Meleagris_gallopavo
ENSPMEG00000000258	smg6	74	54.209	ENSMICG00000012913	SMG6	77	56.544	Microcebus_murinus
ENSPMEG00000000258	smg6	100	64.058	ENSMMOG00000010883	smg6	100	64.342	Mola_mola
ENSPMEG00000000258	smg6	74	54.824	ENSMODG00000010622	SMG6	72	58.930	Monodelphis_domestica
ENSPMEG00000000258	smg6	100	68.675	ENSMALG00000001106	smg6	100	69.112	Monopterus_albus
ENSPMEG00000000258	smg6	74	53.743	MGP_CAROLIEiJ_G0016729	Smg6	87	69.524	Mus_caroli
ENSPMEG00000000258	smg6	74	53.695	ENSMUSG00000038290	Smg6	87	69.206	Mus_musculus
ENSPMEG00000000258	smg6	74	53.428	MGP_PahariEiJ_G0017866	Smg6	87	68.889	Mus_pahari
ENSPMEG00000000258	smg6	74	53.616	MGP_SPRETEiJ_G0017572	Smg6	87	68.889	Mus_spretus
ENSPMEG00000000258	smg6	74	54.745	ENSMPUG00000013046	SMG6	83	53.816	Mustela_putorius_furo
ENSPMEG00000000258	smg6	74	54.466	ENSMLUG00000005739	SMG6	83	54.466	Myotis_lucifugus
ENSPMEG00000000258	smg6	74	53.828	ENSNGAG00000007287	Smg6	89	56.388	Nannospalax_galili
ENSPMEG00000000258	smg6	97	68.086	ENSNBRG00000009511	smg6	99	70.483	Neolamprologus_brichardi
ENSPMEG00000000258	smg6	74	54.610	ENSNLEG00000017171	SMG6	100	57.143	Nomascus_leucogenys
ENSPMEG00000000258	smg6	74	54.818	ENSMEUG00000015804	SMG6	74	57.923	Notamacropus_eugenii
ENSPMEG00000000258	smg6	52	62.304	ENSOPRG00000000579	SMG6	87	50.857	Ochotona_princeps
ENSPMEG00000000258	smg6	86	48.025	ENSODEG00000008038	SMG6	81	52.907	Octodon_degus
ENSPMEG00000000258	smg6	100	70.138	ENSONIG00000005594	smg6	99	76.622	Oreochromis_niloticus
ENSPMEG00000000258	smg6	74	54.223	ENSOCUG00000013018	SMG6	83	53.906	Oryctolagus_cuniculus
ENSPMEG00000000258	smg6	100	66.989	ENSORLG00000003317	smg6	100	67.775	Oryzias_latipes
ENSPMEG00000000258	smg6	100	66.948	ENSORLG00020015343	smg6	100	67.816	Oryzias_latipes_hni
ENSPMEG00000000258	smg6	100	67.089	ENSORLG00015020454	smg6	100	68.077	Oryzias_latipes_hsok
ENSPMEG00000000258	smg6	100	67.773	ENSOMEG00000010838	smg6	100	68.130	Oryzias_melastigma
ENSPMEG00000000258	smg6	74	54.353	ENSOGAG00000004483	SMG6	77	56.410	Otolemur_garnettii
ENSPMEG00000000258	smg6	74	54.753	ENSOARG00000015076	SMG6	85	53.894	Ovis_aries
ENSPMEG00000000258	smg6	74	54.353	ENSPPAG00000043296	SMG6	77	56.277	Pan_paniscus
ENSPMEG00000000258	smg6	74	54.232	ENSPPRG00000014581	SMG6	83	53.708	Panthera_pardus
ENSPMEG00000000258	smg6	74	54.232	ENSPTIG00000008925	SMG6	100	58.000	Panthera_tigris_altaica
ENSPMEG00000000258	smg6	74	54.275	ENSPTRG00000008544	SMG6	100	57.143	Pan_troglodytes
ENSPMEG00000000258	smg6	74	54.717	ENSPANG00000024588	SMG6	77	56.667	Papio_anubis
ENSPMEG00000000258	smg6	68	52.340	ENSPSIG00000006660	SMG6	82	51.727	Pelodiscus_sinensis
ENSPMEG00000000258	smg6	94	78.261	ENSPMGG00000000844	smg6	99	77.853	Periophthalmus_magnuspinnatus
ENSPMEG00000000258	smg6	74	54.358	ENSPEMG00000020707	Smg6	84	59.615	Peromyscus_maniculatus_bairdii
ENSPMEG00000000258	smg6	100	99.502	ENSPFOG00000012035	smg6	100	99.502	Poecilia_formosa
ENSPMEG00000000258	smg6	100	99.440	ENSPLAG00000017660	smg6	100	99.440	Poecilia_latipinna
ENSPMEG00000000258	smg6	100	96.768	ENSPREG00000010066	smg6	100	96.768	Poecilia_reticulata
ENSPMEG00000000258	smg6	74	50.273	ENSPPYG00000007790	SMG6	77	51.990	Pongo_abelii
ENSPMEG00000000258	smg6	71	59.410	ENSPCAG00000000552	SMG6	77	52.891	Procavia_capensis
ENSPMEG00000000258	smg6	74	53.973	ENSPCOG00000020925	SMG6	77	56.715	Propithecus_coquereli
ENSPMEG00000000258	smg6	71	62.100	ENSPVAG00000002159	SMG6	73	62.324	Pteropus_vampyrus
ENSPMEG00000000258	smg6	93	67.010	ENSPNYG00000024151	smg6	99	70.285	Pundamilia_nyererei
ENSPMEG00000000258	smg6	74	61.588	ENSPNAG00000015480	smg6	100	52.578	Pygocentrus_nattereri
ENSPMEG00000000258	smg6	74	53.743	ENSRNOG00000003041	Smg6	87	69.841	Rattus_norvegicus
ENSPMEG00000000258	smg6	74	54.517	ENSRBIG00000024746	SMG6	77	56.851	Rhinopithecus_bieti
ENSPMEG00000000258	smg6	74	54.517	ENSRROG00000030423	SMG6	100	58.076	Rhinopithecus_roxellana
ENSPMEG00000000258	smg6	74	54.617	ENSSBOG00000022518	SMG6	76	54.957	Saimiri_boliviensis_boliviensis
ENSPMEG00000000258	smg6	74	54.917	ENSSHAG00000010045	SMG6	76	56.492	Sarcophilus_harrisii
ENSPMEG00000000258	smg6	94	68.073	ENSSFOG00015005436	smg6	100	51.678	Scleropages_formosus
ENSPMEG00000000258	smg6	100	69.964	ENSSMAG00000019777	smg6	100	69.964	Scophthalmus_maximus
ENSPMEG00000000258	smg6	100	73.329	ENSSDUG00000016412	smg6	100	73.807	Seriola_dumerili
ENSPMEG00000000258	smg6	90	73.753	ENSSLDG00000020747	smg6	98	74.016	Seriola_lalandi_dorsalis
ENSPMEG00000000258	smg6	74	54.877	ENSSPUG00000007152	SMG6	72	58.861	Sphenodon_punctatus
ENSPMEG00000000258	smg6	100	73.418	ENSSPAG00000015633	smg6	100	74.036	Stegastes_partitus
ENSPMEG00000000258	smg6	74	54.268	ENSSSCG00000017826	SMG6	77	56.727	Sus_scrofa
ENSPMEG00000000258	smg6	83	51.168	ENSTGUG00000005836	SMG6	88	53.057	Taeniopygia_guttata
ENSPMEG00000000258	smg6	93	64.816	ENSTRUG00000000358	smg6	98	66.667	Takifugu_rubripes
ENSPMEG00000000258	smg6	95	72.456	ENSTNIG00000016164	smg6	100	72.379	Tetraodon_nigroviridis
ENSPMEG00000000258	smg6	74	51.431	ENSTBEG00000011424	SMG6	72	55.839	Tupaia_belangeri
ENSPMEG00000000258	smg6	66	56.410	ENSTTRG00000001175	SMG6	63	56.534	Tursiops_truncatus
ENSPMEG00000000258	smg6	74	54.225	ENSUAMG00000025152	SMG6	79	56.399	Ursus_americanus
ENSPMEG00000000258	smg6	61	95.833	ENSVPAG00000000225	SMG6	63	95.833	Vicugna_pacos
ENSPMEG00000000258	smg6	74	55.395	ENSVVUG00000021727	SMG6	78	57.493	Vulpes_vulpes
ENSPMEG00000000258	smg6	67	54.091	ENSXETG00000023799	SMG6	75	54.018	Xenopus_tropicalis
ENSPMEG00000000258	smg6	98	91.058	ENSXCOG00000009867	smg6	99	90.572	Xiphophorus_couchianus
ENSPMEG00000000258	smg6	100	94.873	ENSXMAG00000010321	smg6	100	94.812	Xiphophorus_maculatus