EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000000587 (Gene tree)
Gene ID: 106924920
Gene Symbol: lsm7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Minus strand
Length: 2445 bases
Position: chrKQ551715.1:51561-54005
Accession: 106924920
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000009572	LSM	PF01423.22	6.7e-21	1	1
ENSPMEP00000009580	LSM	PF01423.22	6.9e-21	1	1
ENSPMEP00000009591	LSM	PF01423.22	7.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000000545	-	1661	XM_014998878	ENSPMEP00000009591	113 (aa)	XP_014854364	UPI000514994D
ENSPMET00000000571	-	336	-	ENSPMEP00000009572	111 (aa)	-	-
ENSPMET00000000554	-	1533	XM_014998877	ENSPMEP00000009580	108 (aa)	XP_014854363	UPI000443A3AB

Gene Model

Click here to download ENSPMEG00000000587's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000000587's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000000587	lsm7	66	38.028	ENSPMEG00000018925	snrpg	83	38.028
ENSPMEG00000000587	lsm7	69	35.526	ENSPMEG00000022567	lsm8	73	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000000587	lsm7	94	94.118	ENSG00000130332	LSM7	100	93.878	Homo_sapiens
ENSPMEG00000000587	lsm7	87	98.936	ENSAPOG00000015573	lsm7	81	98.936	Acanthochromis_polyacanthus
ENSPMEG00000000587	lsm7	94	94.059	ENSAMEG00000005484	LSM7	100	94.175	Ailuropoda_melanoleuca
ENSPMEG00000000587	lsm7	91	96.939	ENSACIG00000006498	lsm7	78	96.939	Amphilophus_citrinellus
ENSPMEG00000000587	lsm7	94	98.020	ENSAOCG00000001077	lsm7	93	97.059	Amphiprion_ocellaris
ENSPMEG00000000587	lsm7	94	98.020	ENSAPEG00000000694	lsm7	100	96.117	Amphiprion_percula
ENSPMEG00000000587	lsm7	96	96.154	ENSAPEG00000024447	lsm7	98	94.545	Amphiprion_percula
ENSPMEG00000000587	lsm7	94	97.059	ENSATEG00000008557	lsm7	100	96.117	Anabas_testudineus
ENSPMEG00000000587	lsm7	94	94.118	ENSANAG00000037196	-	100	93.204	Aotus_nancymaae
ENSPMEG00000000587	lsm7	94	85.294	ENSANAG00000022222	-	100	84.466	Aotus_nancymaae
ENSPMEG00000000587	lsm7	94	96.078	ENSACLG00000021021	lsm7	100	95.146	Astatotilapia_calliptera
ENSPMEG00000000587	lsm7	94	95.098	ENSAMXG00000037622	lsm7	100	94.175	Astyanax_mexicanus
ENSPMEG00000000587	lsm7	94	94.118	ENSBTAG00000004521	LSM7	100	93.204	Bos_taurus
ENSPMEG00000000587	lsm7	95	57.282	WBGene00003081	lsm-7	99	57.282	Caenorhabditis_elegans
ENSPMEG00000000587	lsm7	51	94.545	ENSCJAG00000039713	-	87	76.056	Callithrix_jacchus
ENSPMEG00000000587	lsm7	94	94.059	ENSCAFG00000019409	LSM7	99	94.118	Canis_familiaris
ENSPMEG00000000587	lsm7	94	94.059	ENSCAFG00020018168	LSM7	74	95.000	Canis_lupus_dingo
ENSPMEG00000000587	lsm7	94	95.050	ENSCHIG00000023663	LSM7	100	95.146	Capra_hircus
ENSPMEG00000000587	lsm7	66	94.366	ENSCAPG00000014534	LSM7	100	94.366	Cavia_aperea
ENSPMEG00000000587	lsm7	94	95.050	ENSCPOG00000014025	LSM7	100	95.050	Cavia_porcellus
ENSPMEG00000000587	lsm7	94	95.050	ENSCCAG00000035456	LSM7	100	94.118	Cebus_capucinus
ENSPMEG00000000587	lsm7	94	94.118	ENSCATG00000023543	LSM7	100	93.204	Cercocebus_atys
ENSPMEG00000000587	lsm7	94	94.118	ENSCLAG00000011635	LSM7	100	93.204	Chinchilla_lanigera
ENSPMEG00000000587	lsm7	94	94.118	ENSCSAG00000011599	LSM7	100	93.204	Chlorocebus_sabaeus
ENSPMEG00000000587	lsm7	67	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSPMEG00000000587	lsm7	89	79.167	ENSCING00000022134	-	97	79.167	Ciona_intestinalis
ENSPMEG00000000587	lsm7	94	94.118	ENSCANG00000035525	LSM7	100	93.204	Colobus_angolensis_palliatus
ENSPMEG00000000587	lsm7	94	93.137	ENSCGRG00001000807	-	100	92.233	Cricetulus_griseus_chok1gshd
ENSPMEG00000000587	lsm7	83	85.556	ENSCGRG00001016005	-	93	84.615	Cricetulus_griseus_chok1gshd
ENSPMEG00000000587	lsm7	83	85.556	ENSCGRG00000006821	-	93	84.615	Cricetulus_griseus_crigri
ENSPMEG00000000587	lsm7	96	91.346	ENSCGRG00000014355	-	98	94.118	Cricetulus_griseus_crigri
ENSPMEG00000000587	lsm7	100	92.593	ENSCSEG00000014900	lsm7	90	94.340	Cynoglossus_semilaevis
ENSPMEG00000000587	lsm7	100	97.222	ENSCVAG00000021091	lsm7	100	97.222	Cyprinodon_variegatus
ENSPMEG00000000587	lsm7	94	95.098	ENSDARG00000058328	lsm7	100	94.175	Danio_rerio
ENSPMEG00000000587	lsm7	94	93.069	ENSDORG00000024460	Lsm7	100	92.157	Dipodomys_ordii
ENSPMEG00000000587	lsm7	94	70.874	FBgn0261068	LSm7	89	73.469	Drosophila_melanogaster
ENSPMEG00000000587	lsm7	94	93.069	ENSETEG00000012788	LSM7	100	93.137	Echinops_telfairi
ENSPMEG00000000587	lsm7	94	85.149	ENSEBUG00000016992	lsm7	99	84.466	Eptatretus_burgeri
ENSPMEG00000000587	lsm7	77	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSPMEG00000000587	lsm7	97	88.571	ENSECAG00000001440	LSM7	65	91.089	Equus_caballus
ENSPMEG00000000587	lsm7	94	93.137	ENSFCAG00000003445	LSM7	100	92.233	Felis_catus
ENSPMEG00000000587	lsm7	94	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSPMEG00000000587	lsm7	89	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSPMEG00000000587	lsm7	100	97.222	ENSFHEG00000006349	lsm7	96	97.222	Fundulus_heteroclitus
ENSPMEG00000000587	lsm7	94	96.040	ENSGMOG00000013320	lsm7	100	96.117	Gadus_morhua
ENSPMEG00000000587	lsm7	94	98.039	ENSGAFG00000013902	lsm7	100	97.087	Gambusia_affinis
ENSPMEG00000000587	lsm7	94	97.030	ENSGACG00000010390	lsm7	100	96.117	Gasterosteus_aculeatus
ENSPMEG00000000587	lsm7	94	94.118	ENSGGOG00000010172	LSM7	100	93.204	Gorilla_gorilla
ENSPMEG00000000587	lsm7	95	95.146	ENSHBUG00000004616	lsm7	100	95.146	Haplochromis_burtoni
ENSPMEG00000000587	lsm7	94	94.118	ENSHGLG00000010587	LSM7	100	93.204	Heterocephalus_glaber_female
ENSPMEG00000000587	lsm7	94	94.118	ENSHGLG00100000852	LSM7	100	93.204	Heterocephalus_glaber_male
ENSPMEG00000000587	lsm7	94	97.030	ENSHCOG00000020252	lsm7	100	97.030	Hippocampus_comes
ENSPMEG00000000587	lsm7	94	95.098	ENSIPUG00000024724	lsm7	100	94.175	Ictalurus_punctatus
ENSPMEG00000000587	lsm7	94	95.050	ENSSTOG00000028372	LSM7	100	94.118	Ictidomys_tridecemlineatus
ENSPMEG00000000587	lsm7	93	95.000	ENSJJAG00000001936	Lsm7	99	94.118	Jaculus_jaculus
ENSPMEG00000000587	lsm7	94	98.039	ENSKMAG00000022151	lsm7	100	97.087	Kryptolebias_marmoratus
ENSPMEG00000000587	lsm7	94	97.059	ENSLBEG00000005203	lsm7	100	96.117	Labrus_bergylta
ENSPMEG00000000587	lsm7	94	96.040	ENSLACG00000015700	LSM7	100	95.146	Latimeria_chalumnae
ENSPMEG00000000587	lsm7	94	97.030	ENSLOCG00000004356	lsm7	100	96.117	Lepisosteus_oculatus
ENSPMEG00000000587	lsm7	95	94.175	ENSLAFG00000029302	LSM7	100	94.175	Loxodonta_africana
ENSPMEG00000000587	lsm7	94	94.118	ENSMFAG00000044572	LSM7	100	93.204	Macaca_fascicularis
ENSPMEG00000000587	lsm7	94	95.050	ENSMMUG00000000452	LSM7	100	94.118	Macaca_mulatta
ENSPMEG00000000587	lsm7	94	94.118	ENSMNEG00000004393	LSM7	100	93.204	Macaca_nemestrina
ENSPMEG00000000587	lsm7	94	95.050	ENSMLEG00000030852	LSM7	100	95.050	Mandrillus_leucophaeus
ENSPMEG00000000587	lsm7	94	96.078	ENSMAMG00000005410	lsm7	100	95.146	Mastacembelus_armatus
ENSPMEG00000000587	lsm7	94	96.078	ENSMZEG00005028055	lsm7	100	95.146	Maylandia_zebra
ENSPMEG00000000587	lsm7	94	96.078	ENSMGAG00000000750	LSM7	91	94.286	Meleagris_gallopavo
ENSPMEG00000000587	lsm7	94	94.059	ENSMAUG00000009276	Lsm7	100	93.204	Mesocricetus_auratus
ENSPMEG00000000587	lsm7	94	94.118	ENSMICG00000028619	-	100	93.204	Microcebus_murinus
ENSPMEG00000000587	lsm7	94	94.118	ENSMICG00000009988	-	100	94.175	Microcebus_murinus
ENSPMEG00000000587	lsm7	94	93.137	ENSMOCG00000016925	Lsm7	100	92.233	Microtus_ochrogaster
ENSPMEG00000000587	lsm7	94	97.059	ENSMMOG00000019645	lsm7	98	96.117	Mola_mola
ENSPMEG00000000587	lsm7	94	95.098	ENSMODG00000004722	LSM7	100	94.175	Monodelphis_domestica
ENSPMEG00000000587	lsm7	94	96.078	ENSMALG00000014511	lsm7	78	97.030	Monopterus_albus
ENSPMEG00000000587	lsm7	94	93.069	MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	Mus_caroli
ENSPMEG00000000587	lsm7	94	93.069	ENSMUSG00000035215	Lsm7	99	92.157	Mus_musculus
ENSPMEG00000000587	lsm7	94	93.069	MGP_PahariEiJ_G0031020	Lsm7	99	92.157	Mus_pahari
ENSPMEG00000000587	lsm7	94	93.069	MGP_SPRETEiJ_G0016425	Lsm7	99	92.157	Mus_spretus
ENSPMEG00000000587	lsm7	98	84.906	ENSMLUG00000024002	-	94	87.255	Myotis_lucifugus
ENSPMEG00000000587	lsm7	94	94.059	ENSMLUG00000013097	-	100	94.175	Myotis_lucifugus
ENSPMEG00000000587	lsm7	94	92.157	ENSNGAG00000021637	Lsm7	100	91.262	Nannospalax_galili
ENSPMEG00000000587	lsm7	94	97.030	ENSNBRG00000001237	-	92	90.435	Neolamprologus_brichardi
ENSPMEG00000000587	lsm7	95	95.146	ENSNBRG00000015770	lsm7	97	91.071	Neolamprologus_brichardi
ENSPMEG00000000587	lsm7	94	94.118	ENSNLEG00000002265	LSM7	100	93.204	Nomascus_leucogenys
ENSPMEG00000000587	lsm7	94	87.255	ENSODEG00000018769	-	100	86.408	Octodon_degus
ENSPMEG00000000587	lsm7	94	73.529	ENSODEG00000008190	-	100	72.816	Octodon_degus
ENSPMEG00000000587	lsm7	94	94.118	ENSODEG00000013590	-	100	93.204	Octodon_degus
ENSPMEG00000000587	lsm7	94	96.078	ENSONIG00000001801	lsm7	89	95.146	Oreochromis_niloticus
ENSPMEG00000000587	lsm7	94	98.020	ENSORLG00000023951	lsm7	100	96.117	Oryzias_latipes
ENSPMEG00000000587	lsm7	94	98.020	ENSORLG00020022226	lsm7	100	96.117	Oryzias_latipes_hni
ENSPMEG00000000587	lsm7	96	96.154	ENSORLG00015020044	lsm7	99	93.458	Oryzias_latipes_hsok
ENSPMEG00000000587	lsm7	95	97.087	ENSOMEG00000012806	lsm7	100	96.117	Oryzias_melastigma
ENSPMEG00000000587	lsm7	94	84.314	ENSOGAG00000024373	-	100	83.495	Otolemur_garnettii
ENSPMEG00000000587	lsm7	94	95.050	ENSOGAG00000000144	-	100	95.098	Otolemur_garnettii
ENSPMEG00000000587	lsm7	94	95.050	ENSOARG00000014013	LSM7	100	95.146	Ovis_aries
ENSPMEG00000000587	lsm7	94	94.118	ENSPPAG00000026500	LSM7	100	93.204	Pan_paniscus
ENSPMEG00000000587	lsm7	94	93.137	ENSPPRG00000008624	LSM7	100	92.233	Panthera_pardus
ENSPMEG00000000587	lsm7	94	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSPMEG00000000587	lsm7	94	94.118	ENSPTRG00000010233	LSM7	100	93.204	Pan_troglodytes
ENSPMEG00000000587	lsm7	94	94.118	ENSPANG00000020668	LSM7	100	93.204	Papio_anubis
ENSPMEG00000000587	lsm7	95	97.087	ENSPKIG00000011325	lsm7	100	96.117	Paramormyrops_kingsleyae
ENSPMEG00000000587	lsm7	94	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSPMEG00000000587	lsm7	94	97.059	ENSPMGG00000006498	lsm7	100	96.117	Periophthalmus_magnuspinnatus
ENSPMEG00000000587	lsm7	94	96.040	ENSPCIG00000030454	LSM7	100	95.098	Phascolarctos_cinereus
ENSPMEG00000000587	lsm7	100	100.000	ENSPFOG00000012467	lsm7	100	100.000	Poecilia_formosa
ENSPMEG00000000587	lsm7	100	100.000	ENSPLAG00000000252	lsm7	100	100.000	Poecilia_latipinna
ENSPMEG00000000587	lsm7	79	77.907	ENSPREG00000016718	lsm7	66	77.907	Poecilia_reticulata
ENSPMEG00000000587	lsm7	98	69.369	ENSPPYG00000009348	-	50	93.151	Pongo_abelii
ENSPMEG00000000587	lsm7	94	95.050	ENSPCOG00000017177	LSM7	100	94.118	Propithecus_coquereli
ENSPMEG00000000587	lsm7	94	96.078	ENSPNYG00000006938	lsm7	100	95.146	Pundamilia_nyererei
ENSPMEG00000000587	lsm7	94	96.040	ENSPNAG00000010141	lsm7	100	95.098	Pygocentrus_nattereri
ENSPMEG00000000587	lsm7	94	94.059	ENSRNOG00000019552	Lsm7	99	93.137	Rattus_norvegicus
ENSPMEG00000000587	lsm7	94	94.118	ENSRBIG00000035978	LSM7	100	93.204	Rhinopithecus_bieti
ENSPMEG00000000587	lsm7	94	94.118	ENSRROG00000034044	LSM7	100	93.204	Rhinopithecus_roxellana
ENSPMEG00000000587	lsm7	80	48.315	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSPMEG00000000587	lsm7	94	94.118	ENSSBOG00000034899	LSM7	100	93.204	Saimiri_boliviensis_boliviensis
ENSPMEG00000000587	lsm7	94	95.098	ENSSFOG00015006728	lsm7	100	94.175	Scleropages_formosus
ENSPMEG00000000587	lsm7	94	98.020	ENSSMAG00000004195	lsm7	94	97.087	Scophthalmus_maximus
ENSPMEG00000000587	lsm7	94	97.059	ENSSDUG00000001863	lsm7	100	96.117	Seriola_dumerili
ENSPMEG00000000587	lsm7	94	97.059	ENSSLDG00000016339	lsm7	100	96.117	Seriola_lalandi_dorsalis
ENSPMEG00000000587	lsm7	98	94.340	ENSSPAG00000015221	lsm7	100	96.117	Stegastes_partitus
ENSPMEG00000000587	lsm7	94	95.050	ENSSSCG00000013463	LSM7	100	94.118	Sus_scrofa
ENSPMEG00000000587	lsm7	94	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSPMEG00000000587	lsm7	94	96.078	ENSTRUG00000022913	lsm7	100	95.146	Takifugu_rubripes
ENSPMEG00000000587	lsm7	94	96.078	ENSTNIG00000015525	lsm7	100	95.146	Tetraodon_nigroviridis
ENSPMEG00000000587	lsm7	65	81.429	ENSTBEG00000016602	LSM7	100	81.429	Tupaia_belangeri
ENSPMEG00000000587	lsm7	94	94.059	ENSUAMG00000000912	LSM7	86	94.175	Ursus_americanus
ENSPMEG00000000587	lsm7	97	91.429	ENSUMAG00000006556	LSM7	81	92.308	Ursus_maritimus
ENSPMEG00000000587	lsm7	66	92.958	ENSVVUG00000002640	LSM7	65	92.958	Vulpes_vulpes
ENSPMEG00000000587	lsm7	94	94.059	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSPMEG00000000587	lsm7	94	99.020	ENSXCOG00000002572	lsm7	100	99.020	Xiphophorus_couchianus
ENSPMEG00000000587	lsm7	96	97.222	ENSXMAG00000018630	lsm7	100	97.087	Xiphophorus_maculatus