EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPMEG00000000836 (Gene tree)
Gene ID: 106918899
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 5358 bases
Position: chrKQ551311.1:268157-273514
Accession: 106918899
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000028215	Smg4_UPF3	PF03467.15	2.9e-53	1	1
ENSPMEP00000011108	Smg4_UPF3	PF03467.15	2.4e-44	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000018144	-	1452	XM_014988959	ENSPMEP00000028215	483 (aa)	XP_014844445	-
ENSPMET00000018158	-	1284	-	ENSPMEP00000011108	427 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000000836's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000000836's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000000836	upf3a	90	54.902	ENSG00000169062	UPF3A	92	54.902	Homo_sapiens
ENSPMEG00000000836	upf3a	100	87.164	ENSAPOG00000013484	upf3a	100	87.164	Acanthochromis_polyacanthus
ENSPMEG00000000836	upf3a	87	55.056	ENSAMEG00000004259	UPF3A	93	55.056	Ailuropoda_melanoleuca
ENSPMEG00000000836	upf3a	83	51.636	ENSAMEG00000000163	UPF3B	50	69.620	Ailuropoda_melanoleuca
ENSPMEG00000000836	upf3a	98	86.820	ENSACIG00000020468	upf3a	99	86.820	Amphilophus_citrinellus
ENSPMEG00000000836	upf3a	50	62.661	ENSACIG00000013582	upf3b	93	47.253	Amphilophus_citrinellus
ENSPMEG00000000836	upf3a	100	87.992	ENSAOCG00000020784	upf3a	100	87.992	Amphiprion_ocellaris
ENSPMEG00000000836	upf3a	63	60.510	ENSAOCG00000000706	upf3b	93	47.588	Amphiprion_ocellaris
ENSPMEG00000000836	upf3a	100	87.992	ENSAPEG00000003519	upf3a	100	87.992	Amphiprion_percula
ENSPMEG00000000836	upf3a	100	85.093	ENSATEG00000005843	upf3a	100	85.093	Anabas_testudineus
ENSPMEG00000000836	upf3a	84	51.818	ENSATEG00000018742	upf3b	58	74.342	Anabas_testudineus
ENSPMEG00000000836	upf3a	83	63.614	ENSACAG00000001540	UPF3A	94	63.855	Anolis_carolinensis
ENSPMEG00000000836	upf3a	84	45.035	ENSANAG00000025598	-	65	68.116	Aotus_nancymaae
ENSPMEG00000000836	upf3a	83	51.402	ENSANAG00000021894	-	77	71.515	Aotus_nancymaae
ENSPMEG00000000836	upf3a	93	51.943	ENSANAG00000021713	UPF3A	97	51.943	Aotus_nancymaae
ENSPMEG00000000836	upf3a	100	86.957	ENSACLG00000026274	upf3a	100	86.957	Astatotilapia_calliptera
ENSPMEG00000000836	upf3a	99	76.971	ENSAMXG00000002608	upf3a	100	76.971	Astyanax_mexicanus
ENSPMEG00000000836	upf3a	91	53.564	ENSCJAG00000019102	UPF3A	95	53.040	Callithrix_jacchus
ENSPMEG00000000836	upf3a	83	51.402	ENSCJAG00000004975	UPF3B	77	70.909	Callithrix_jacchus
ENSPMEG00000000836	upf3a	83	51.643	ENSCAFG00000018426	UPF3B	50	69.620	Canis_familiaris
ENSPMEG00000000836	upf3a	85	55.972	ENSCAFG00000006504	UPF3A	86	47.188	Canis_familiaris
ENSPMEG00000000836	upf3a	85	56.471	ENSCAFG00020014268	UPF3A	84	47.666	Canis_lupus_dingo
ENSPMEG00000000836	upf3a	83	45.823	ENSCAFG00020004074	UPF3B	64	73.973	Canis_lupus_dingo
ENSPMEG00000000836	upf3a	83	55.181	ENSCHIG00000008682	UPF3A	85	52.655	Capra_hircus
ENSPMEG00000000836	upf3a	76	51.451	ENSTSYG00000001918	UPF3A	99	51.451	Carlito_syrichta
ENSPMEG00000000836	upf3a	83	50.812	ENSTSYG00000014690	UPF3B	76	66.471	Carlito_syrichta
ENSPMEG00000000836	upf3a	94	54.489	ENSCCAG00000018406	UPF3A	96	54.489	Cebus_capucinus
ENSPMEG00000000836	upf3a	89	56.659	ENSCATG00000029733	UPF3A	95	55.246	Cercocebus_atys
ENSPMEG00000000836	upf3a	89	55.928	ENSCSAG00000017388	UPF3A	95	54.167	Chlorocebus_sabaeus
ENSPMEG00000000836	upf3a	83	44.630	ENSCPBG00000020685	UPF3B	58	71.795	Chrysemys_picta_bellii
ENSPMEG00000000836	upf3a	76	59.409	ENSCGRG00001017387	Upf3a	87	57.796	Cricetulus_griseus_chok1gshd
ENSPMEG00000000836	upf3a	76	59.409	ENSCGRG00000001468	Upf3a	87	57.796	Cricetulus_griseus_crigri
ENSPMEG00000000836	upf3a	99	81.950	ENSCSEG00000005106	upf3a	99	81.950	Cynoglossus_semilaevis
ENSPMEG00000000836	upf3a	81	50.594	ENSCSEG00000002046	upf3b	54	73.026	Cynoglossus_semilaevis
ENSPMEG00000000836	upf3a	100	87.578	ENSCVAG00000022333	upf3a	100	87.578	Cyprinodon_variegatus
ENSPMEG00000000836	upf3a	85	41.463	ENSCVAG00000005030	upf3b	58	71.053	Cyprinodon_variegatus
ENSPMEG00000000836	upf3a	99	75.726	ENSDARG00000069297	upf3a	100	75.726	Danio_rerio
ENSPMEG00000000836	upf3a	83	47.523	ENSDARG00000000489	upf3b	60	69.872	Danio_rerio
ENSPMEG00000000836	upf3a	74	63.587	ENSDNOG00000034391	UPF3A	83	63.415	Dasypus_novemcinctus
ENSPMEG00000000836	upf3a	83	54.327	ENSETEG00000010110	UPF3A	94	50.840	Echinops_telfairi
ENSPMEG00000000836	upf3a	89	55.381	ENSEASG00005021884	UPF3A	89	54.767	Equus_asinus_asinus
ENSPMEG00000000836	upf3a	83	48.456	ENSEASG00005012919	UPF3B	62	71.014	Equus_asinus_asinus
ENSPMEG00000000836	upf3a	89	55.381	ENSECAG00000017141	UPF3A	89	54.767	Equus_caballus
ENSPMEG00000000836	upf3a	83	48.456	ENSECAG00000016947	UPF3B	62	64.286	Equus_caballus
ENSPMEG00000000836	upf3a	60	59.486	ENSELUG00000020389	upf3b	55	72.436	Esox_lucius
ENSPMEG00000000836	upf3a	98	76.923	ENSELUG00000011050	upf3a	99	76.763	Esox_lucius
ENSPMEG00000000836	upf3a	91	55.195	ENSFCAG00000014602	UPF3A	92	55.628	Felis_catus
ENSPMEG00000000836	upf3a	54	75.000	ENSFALG00000001569	UPF3B	51	74.359	Ficedula_albicollis
ENSPMEG00000000836	upf3a	83	49.770	ENSFHEG00000017895	upf3b	59	71.053	Fundulus_heteroclitus
ENSPMEG00000000836	upf3a	66	78.313	ENSGMOG00000019615	upf3a	100	74.251	Gadus_morhua
ENSPMEG00000000836	upf3a	50	65.060	ENSGMOG00000001621	upf3b	55	69.281	Gadus_morhua
ENSPMEG00000000836	upf3a	100	93.582	ENSGAFG00000021170	upf3a	100	93.582	Gambusia_affinis
ENSPMEG00000000836	upf3a	86	42.212	ENSGAFG00000000829	upf3b	60	71.711	Gambusia_affinis
ENSPMEG00000000836	upf3a	82	48.115	ENSGACG00000017435	upf3b	60	71.341	Gasterosteus_aculeatus
ENSPMEG00000000836	upf3a	66	82.555	ENSGACG00000001972	upf3a	100	82.555	Gasterosteus_aculeatus
ENSPMEG00000000836	upf3a	83	44.836	ENSGAGG00000001219	UPF3B	56	74.342	Gopherus_agassizii
ENSPMEG00000000836	upf3a	88	44.573	ENSGGOG00000043074	-	82	45.278	Gorilla_gorilla
ENSPMEG00000000836	upf3a	82	46.959	ENSGGOG00000041219	-	87	45.499	Gorilla_gorilla
ENSPMEG00000000836	upf3a	90	55.556	ENSGGOG00000015428	UPF3A	92	55.338	Gorilla_gorilla
ENSPMEG00000000836	upf3a	100	85.714	ENSHBUG00000011325	upf3a	99	85.892	Haplochromis_burtoni
ENSPMEG00000000836	upf3a	83	42.326	ENSHBUG00000017393	upf3b	58	71.053	Haplochromis_burtoni
ENSPMEG00000000836	upf3a	73	56.593	ENSHGLG00000001544	UPF3A	86	56.593	Heterocephalus_glaber_female
ENSPMEG00000000836	upf3a	73	56.593	ENSHGLG00100013244	UPF3A	86	56.593	Heterocephalus_glaber_male
ENSPMEG00000000836	upf3a	88	50.437	ENSHCOG00000017004	upf3b	63	73.026	Hippocampus_comes
ENSPMEG00000000836	upf3a	94	76.035	ENSHCOG00000013985	upf3a	94	76.471	Hippocampus_comes
ENSPMEG00000000836	upf3a	65	70.283	ENSIPUG00000019249	upf3b	58	72.436	Ictalurus_punctatus
ENSPMEG00000000836	upf3a	99	75.519	ENSIPUG00000023450	upf3a	100	75.519	Ictalurus_punctatus
ENSPMEG00000000836	upf3a	88	47.380	ENSKMAG00000020300	upf3b	62	71.053	Kryptolebias_marmoratus
ENSPMEG00000000836	upf3a	100	86.157	ENSKMAG00000004381	upf3a	100	86.157	Kryptolebias_marmoratus
ENSPMEG00000000836	upf3a	98	79.368	ENSLBEG00000021570	upf3a	100	78.616	Labrus_bergylta
ENSPMEG00000000836	upf3a	61	41.944	ENSLACG00000006645	UPF3A	66	87.500	Latimeria_chalumnae
ENSPMEG00000000836	upf3a	58	68.000	ENSLACG00000008691	UPF3B	60	76.316	Latimeria_chalumnae
ENSPMEG00000000836	upf3a	97	71.548	ENSLOCG00000002665	upf3a	98	71.548	Lepisosteus_oculatus
ENSPMEG00000000836	upf3a	64	80.000	ENSLAFG00000023358	UPF3A	63	80.000	Loxodonta_africana
ENSPMEG00000000836	upf3a	89	55.329	ENSMFAG00000045016	UPF3A	95	53.548	Macaca_fascicularis
ENSPMEG00000000836	upf3a	80	58.718	ENSMMUG00000007449	UPF3A	95	54.803	Macaca_mulatta
ENSPMEG00000000836	upf3a	86	56.459	ENSMNEG00000036402	UPF3A	83	56.905	Macaca_nemestrina
ENSPMEG00000000836	upf3a	81	58.081	ENSMLEG00000014726	UPF3A	94	56.429	Mandrillus_leucophaeus
ENSPMEG00000000836	upf3a	100	85.921	ENSMAMG00000018364	upf3a	100	85.921	Mastacembelus_armatus
ENSPMEG00000000836	upf3a	100	86.957	ENSMZEG00005021571	upf3a	100	86.957	Maylandia_zebra
ENSPMEG00000000836	upf3a	86	61.215	ENSMGAG00000014837	UPF3A	99	61.305	Meleagris_gallopavo
ENSPMEG00000000836	upf3a	86	44.804	ENSMMOG00000004183	upf3b	59	73.377	Mola_mola
ENSPMEG00000000836	upf3a	100	83.058	ENSMMOG00000019751	upf3a	100	83.058	Mola_mola
ENSPMEG00000000836	upf3a	82	46.404	ENSMODG00000010232	UPF3B	57	73.649	Monodelphis_domestica
ENSPMEG00000000836	upf3a	86	63.318	ENSMODG00000003159	UPF3A	95	63.466	Monodelphis_domestica
ENSPMEG00000000836	upf3a	77	61.702	MGP_PahariEiJ_G0021311	Upf3a	87	61.702	Mus_pahari
ENSPMEG00000000836	upf3a	90	54.585	ENSMPUG00000009139	UPF3A	90	55.022	Mustela_putorius_furo
ENSPMEG00000000836	upf3a	84	49.539	ENSMLUG00000010821	UPF3B	53	69.620	Myotis_lucifugus
ENSPMEG00000000836	upf3a	81	58.780	ENSMLUG00000015905	UPF3A	92	58.780	Myotis_lucifugus
ENSPMEG00000000836	upf3a	81	56.296	ENSNGAG00000019314	Upf3a	95	56.296	Nannospalax_galili
ENSPMEG00000000836	upf3a	100	85.921	ENSNBRG00000000828	upf3a	100	85.921	Neolamprologus_brichardi
ENSPMEG00000000836	upf3a	85	58.111	ENSNLEG00000007563	UPF3A	92	55.217	Nomascus_leucogenys
ENSPMEG00000000836	upf3a	100	86.186	ENSONIG00000006817	upf3a	100	86.186	Oreochromis_niloticus
ENSPMEG00000000836	upf3a	84	45.169	ENSOANG00000002594	-	69	77.931	Ornithorhynchus_anatinus
ENSPMEG00000000836	upf3a	74	56.640	ENSOANG00000006985	-	95	56.640	Ornithorhynchus_anatinus
ENSPMEG00000000836	upf3a	84	46.575	ENSORLG00000001026	upf3b	62	67.763	Oryzias_latipes
ENSPMEG00000000836	upf3a	100	82.402	ENSORLG00000010911	upf3a	100	82.402	Oryzias_latipes
ENSPMEG00000000836	upf3a	100	80.331	ENSORLG00020014317	upf3a	100	80.331	Oryzias_latipes_hni
ENSPMEG00000000836	upf3a	84	40.783	ENSORLG00020003758	upf3b	62	68.421	Oryzias_latipes_hni
ENSPMEG00000000836	upf3a	84	41.244	ENSORLG00015012954	upf3b	62	68.421	Oryzias_latipes_hsok
ENSPMEG00000000836	upf3a	100	80.745	ENSORLG00015017339	upf3a	58	80.745	Oryzias_latipes_hsok
ENSPMEG00000000836	upf3a	100	81.781	ENSOMEG00000014425	upf3a	100	81.781	Oryzias_melastigma
ENSPMEG00000000836	upf3a	82	41.844	ENSOMEG00000014736	upf3b	57	67.763	Oryzias_melastigma
ENSPMEG00000000836	upf3a	71	60.822	ENSOGAG00000004788	UPF3A	88	60.822	Otolemur_garnettii
ENSPMEG00000000836	upf3a	84	56.563	ENSOARG00000009004	UPF3A	84	56.563	Ovis_aries
ENSPMEG00000000836	upf3a	90	54.684	ENSPPAG00000042267	UPF3A	92	54.684	Pan_paniscus
ENSPMEG00000000836	upf3a	91	54.978	ENSPPRG00000025062	UPF3A	92	54.762	Panthera_pardus
ENSPMEG00000000836	upf3a	84	50.688	ENSPPRG00000023536	UPF3B	51	69.620	Panthera_pardus
ENSPMEG00000000836	upf3a	82	43.796	ENSPTRG00000051640	-	87	42.092	Pan_troglodytes
ENSPMEG00000000836	upf3a	82	47.087	ENSPTRG00000041187	-	87	43.689	Pan_troglodytes
ENSPMEG00000000836	upf3a	90	54.684	ENSPTRG00000006073	UPF3A	92	54.684	Pan_troglodytes
ENSPMEG00000000836	upf3a	89	56.885	ENSPANG00000004346	UPF3A	90	56.885	Papio_anubis
ENSPMEG00000000836	upf3a	93	70.217	ENSPKIG00000004422	upf3a	98	68.750	Paramormyrops_kingsleyae
ENSPMEG00000000836	upf3a	92	47.660	ENSPKIG00000019226	upf3b	93	64.474	Paramormyrops_kingsleyae
ENSPMEG00000000836	upf3a	83	64.663	ENSPSIG00000007468	UPF3A	96	64.663	Pelodiscus_sinensis
ENSPMEG00000000836	upf3a	100	82.004	ENSPMGG00000012696	upf3a	100	82.004	Periophthalmus_magnuspinnatus
ENSPMEG00000000836	upf3a	78	59.173	ENSPEMG00000019968	-	91	59.173	Peromyscus_maniculatus_bairdii
ENSPMEG00000000836	upf3a	74	68.722	ENSPCIG00000019590	-	90	67.150	Phascolarctos_cinereus
ENSPMEG00000000836	upf3a	86	46.119	ENSPCIG00000028914	UPF3B	56	69.461	Phascolarctos_cinereus
ENSPMEG00000000836	upf3a	100	95.445	ENSPFOG00000013222	upf3a	100	95.445	Poecilia_formosa
ENSPMEG00000000836	upf3a	100	98.595	ENSPLAG00000011960	upf3a	100	98.595	Poecilia_latipinna
ENSPMEG00000000836	upf3a	90	54.684	ENSPPYG00000005536	UPF3A	92	54.684	Pongo_abelii
ENSPMEG00000000836	upf3a	86	45.578	ENSPCOG00000021960	UPF3B	54	69.620	Propithecus_coquereli
ENSPMEG00000000836	upf3a	82	57.039	ENSPVAG00000005656	UPF3A	82	56.039	Pteropus_vampyrus
ENSPMEG00000000836	upf3a	83	43.823	ENSPNYG00000009846	upf3b	60	71.053	Pundamilia_nyererei
ENSPMEG00000000836	upf3a	100	86.957	ENSPNYG00000011289	upf3a	100	86.957	Pundamilia_nyererei
ENSPMEG00000000836	upf3a	99	76.141	ENSPNAG00000019532	upf3a	100	76.310	Pygocentrus_nattereri
ENSPMEG00000000836	upf3a	66	71.226	ENSPNAG00000021528	upf3b	60	74.359	Pygocentrus_nattereri
ENSPMEG00000000836	upf3a	68	64.848	ENSRNOG00000017397	Upf3a	81	64.848	Rattus_norvegicus
ENSPMEG00000000836	upf3a	81	58.333	ENSRBIG00000034007	UPF3A	91	56.563	Rhinopithecus_bieti
ENSPMEG00000000836	upf3a	81	58.228	ENSRROG00000012212	UPF3A	85	56.563	Rhinopithecus_roxellana
ENSPMEG00000000836	upf3a	76	54.762	ENSSBOG00000029989	UPF3A	84	54.082	Saimiri_boliviensis_boliviensis
ENSPMEG00000000836	upf3a	83	51.163	ENSSBOG00000019740	UPF3B	78	72.393	Saimiri_boliviensis_boliviensis
ENSPMEG00000000836	upf3a	59	71.242	ENSSHAG00000008634	UPF3B	51	73.649	Sarcophilus_harrisii
ENSPMEG00000000836	upf3a	87	62.529	ENSSHAG00000009895	UPF3A	96	64.000	Sarcophilus_harrisii
ENSPMEG00000000836	upf3a	99	66.874	ENSSFOG00015021851	upf3a	100	69.248	Scleropages_formosus
ENSPMEG00000000836	upf3a	100	81.098	ENSSMAG00000003858	upf3a	100	82.317	Scophthalmus_maximus
ENSPMEG00000000836	upf3a	82	50.922	ENSSMAG00000012913	upf3b	55	73.684	Scophthalmus_maximus
ENSPMEG00000000836	upf3a	100	86.777	ENSSDUG00000009680	upf3a	100	86.957	Seriola_dumerili
ENSPMEG00000000836	upf3a	100	85.507	ENSSLDG00000009700	upf3a	100	85.507	Seriola_lalandi_dorsalis
ENSPMEG00000000836	upf3a	80	48.744	ENSSARG00000007262	UPF3A	92	47.739	Sorex_araneus
ENSPMEG00000000836	upf3a	83	45.863	ENSSPUG00000013082	UPF3B	62	74.000	Sphenodon_punctatus
ENSPMEG00000000836	upf3a	100	87.785	ENSSPAG00000007938	upf3a	100	87.785	Stegastes_partitus
ENSPMEG00000000836	upf3a	83	52.103	ENSSSCG00000012617	UPF3B	51	69.620	Sus_scrofa
ENSPMEG00000000836	upf3a	76	59.318	ENSSSCG00000024679	UPF3A	76	59.008	Sus_scrofa
ENSPMEG00000000836	upf3a	83	64.578	ENSTGUG00000009493	UPF3A	100	65.144	Taeniopygia_guttata
ENSPMEG00000000836	upf3a	81	46.747	ENSTGUG00000003413	UPF3B	58	76.389	Taeniopygia_guttata
ENSPMEG00000000836	upf3a	100	78.261	ENSTRUG00000012730	upf3a	100	78.261	Takifugu_rubripes
ENSPMEG00000000836	upf3a	84	71.671	ENSTNIG00000014973	upf3a	100	71.186	Tetraodon_nigroviridis
ENSPMEG00000000836	upf3a	75	52.547	ENSTTRG00000015414	UPF3A	74	52.533	Tursiops_truncatus
ENSPMEG00000000836	upf3a	81	56.219	ENSVPAG00000003525	UPF3A	94	56.219	Vicugna_pacos
ENSPMEG00000000836	upf3a	84	55.399	ENSVVUG00000013538	UPF3A	84	46.226	Vulpes_vulpes
ENSPMEG00000000836	upf3a	83	45.823	ENSVVUG00000011594	UPF3B	77	71.515	Vulpes_vulpes
ENSPMEG00000000836	upf3a	61	71.429	ENSXETG00000007440	upf3b	71	73.780	Xenopus_tropicalis
ENSPMEG00000000836	upf3a	84	56.659	ENSXETG00000002572	upf3a	93	56.659	Xenopus_tropicalis
ENSPMEG00000000836	upf3a	100	90.000	ENSXCOG00000018591	upf3a	100	90.227	Xiphophorus_couchianus
ENSPMEG00000000836	upf3a	100	94.824	ENSXMAG00000013452	upf3a	100	94.824	Xiphophorus_maculatus