EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPMEG00000002129 (Gene tree)
Gene ID: 106905435
Gene Symbol: si:ch73-63e15.2
Alias: -
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Poecilia_mexicana
Status: putative
Strand: Plus strand
Length: 68369 bases
Position: chrKQ553118.1:13570-81938
Accession: 106905435
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPMEP00000001217	ResIII	PF04851.15	1.6e-08	1	1
ENSPMEP00000001222	ResIII	PF04851.15	1.7e-08	1	1
ENSPMEP00000001205	ResIII	PF04851.15	2.9e-08	1	1
ENSPMEP00000001203	ResIII	PF04851.15	4.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPMET00000014574	-	5648	XM_014970279	ENSPMEP00000001217	1550 (aa)	XP_014825765	UPI00072E95A4
ENSPMET00000014597	-	5090	XM_014970280	ENSPMEP00000001203	1493 (aa)	XP_014825766	UPI00072EE1B2
ENSPMET00000014562	-	5729	XM_014970276	ENSPMEP00000001222	1577 (aa)	XP_014825762	UPI00072EC296
ENSPMET00000014592	-	3063	-	ENSPMEP00000001205	1020 (aa)	-	-

Gene Model

Click here to download ENSPMEG00000002129's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPMEG00000002129's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPMEG00000002129	si:ch73-63e15.2	75	64.853	ENSPMEG00000021212	sbno1	70	65.596

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPMEG00000002129	si:ch73-63e15.2	88	71.016	ENSG00000064932	SBNO2	88	67.665	Homo_sapiens
ENSPMEG00000002129	si:ch73-63e15.2	96	86.917	ENSAPOG00000003185	si:ch73-63e15.2	93	87.162	Acanthochromis_polyacanthus
ENSPMEG00000002129	si:ch73-63e15.2	97	86.614	ENSAOCG00000016581	si:ch73-63e15.2	99	86.713	Amphiprion_ocellaris
ENSPMEG00000002129	si:ch73-63e15.2	96	85.700	ENSAPEG00000008862	si:ch73-63e15.2	100	80.284	Amphiprion_percula
ENSPMEG00000002129	si:ch73-63e15.2	96	86.707	ENSATEG00000023838	si:ch73-63e15.2	99	86.855	Anabas_testudineus
ENSPMEG00000002129	si:ch73-63e15.2	90	73.333	ENSAPLG00000007158	SBNO2	89	72.270	Anas_platyrhynchos
ENSPMEG00000002129	si:ch73-63e15.2	90	69.738	ENSANAG00000026685	SBNO2	89	67.038	Aotus_nancymaae
ENSPMEG00000002129	si:ch73-63e15.2	96	82.621	ENSACLG00000005090	si:ch73-63e15.2	100	75.899	Astatotilapia_calliptera
ENSPMEG00000002129	si:ch73-63e15.2	96	77.551	ENSAMXG00000015881	si:ch73-63e15.2	85	80.973	Astyanax_mexicanus
ENSPMEG00000002129	si:ch73-63e15.2	97	77.384	ENSAMXG00000018868	sbno2a	99	77.286	Astyanax_mexicanus
ENSPMEG00000002129	si:ch73-63e15.2	92	70.279	ENSBTAG00000020780	SBNO2	88	69.607	Bos_taurus
ENSPMEG00000002129	si:ch73-63e15.2	90	70.995	ENSCAFG00000019543	SBNO2	90	66.347	Canis_familiaris
ENSPMEG00000002129	si:ch73-63e15.2	90	70.995	ENSCAFG00020017115	SBNO2	95	66.347	Canis_lupus_dingo
ENSPMEG00000002129	si:ch73-63e15.2	90	70.964	ENSCHIG00000026127	SBNO2	90	66.212	Capra_hircus
ENSPMEG00000002129	si:ch73-63e15.2	90	69.368	ENSCAPG00000005731	SBNO2	94	66.667	Cavia_aperea
ENSPMEG00000002129	si:ch73-63e15.2	90	69.368	ENSCPOG00000007477	SBNO2	87	66.610	Cavia_porcellus
ENSPMEG00000002129	si:ch73-63e15.2	90	69.624	ENSCCAG00000037518	SBNO2	89	66.980	Cebus_capucinus
ENSPMEG00000002129	si:ch73-63e15.2	88	71.261	ENSCATG00000037046	SBNO2	88	67.579	Cercocebus_atys
ENSPMEG00000002129	si:ch73-63e15.2	91	69.896	ENSCLAG00000010178	SBNO2	99	68.875	Chinchilla_lanigera
ENSPMEG00000002129	si:ch73-63e15.2	88	71.261	ENSCSAG00000012317	SBNO2	90	65.323	Chlorocebus_sabaeus
ENSPMEG00000002129	si:ch73-63e15.2	91	74.710	ENSCPBG00000008920	SBNO2	78	84.634	Chrysemys_picta_bellii
ENSPMEG00000002129	si:ch73-63e15.2	88	70.776	ENSCANG00000036745	SBNO2	96	67.232	Colobus_angolensis_palliatus
ENSPMEG00000002129	si:ch73-63e15.2	90	67.073	ENSCGRG00001023960	Sbno2	85	67.393	Cricetulus_griseus_chok1gshd
ENSPMEG00000002129	si:ch73-63e15.2	90	70.094	ENSCGRG00000011984	Sbno2	85	68.728	Cricetulus_griseus_crigri
ENSPMEG00000002129	si:ch73-63e15.2	90	86.501	ENSCSEG00000006856	si:ch73-63e15.2	96	88.349	Cynoglossus_semilaevis
ENSPMEG00000002129	si:ch73-63e15.2	100	83.851	ENSCVAG00000005663	si:ch73-63e15.2	100	83.893	Cyprinodon_variegatus
ENSPMEG00000002129	si:ch73-63e15.2	96	76.660	ENSDARG00000016188	SBNO2	99	68.000	Danio_rerio
ENSPMEG00000002129	si:ch73-63e15.2	96	75.411	ENSDARG00000098801	sbno2a	91	75.635	Danio_rerio
ENSPMEG00000002129	si:ch73-63e15.2	90	70.650	ENSDORG00000002916	Sbno2	90	66.024	Dipodomys_ordii
ENSPMEG00000002129	si:ch73-63e15.2	91	70.699	ENSEASG00005021621	SBNO2	89	69.521	Equus_asinus_asinus
ENSPMEG00000002129	si:ch73-63e15.2	91	70.490	ENSECAG00000011827	SBNO2	89	69.606	Equus_caballus
ENSPMEG00000002129	si:ch73-63e15.2	96	81.897	ENSELUG00000020457	si:ch73-63e15.2	99	72.215	Esox_lucius
ENSPMEG00000002129	si:ch73-63e15.2	90	72.680	ENSFALG00000013988	SBNO2	92	67.480	Ficedula_albicollis
ENSPMEG00000002129	si:ch73-63e15.2	88	67.769	ENSFDAG00000015186	SBNO2	88	65.923	Fukomys_damarensis
ENSPMEG00000002129	si:ch73-63e15.2	96	88.390	ENSFHEG00000022262	si:ch73-63e15.2	100	84.852	Fundulus_heteroclitus
ENSPMEG00000002129	si:ch73-63e15.2	90	86.114	ENSGMOG00000007542	si:ch73-63e15.2	95	85.890	Gadus_morhua
ENSPMEG00000002129	si:ch73-63e15.2	90	73.438	ENSGALG00000037522	SBNO2	85	72.061	Gallus_gallus
ENSPMEG00000002129	si:ch73-63e15.2	96	95.115	ENSGAFG00000004860	si:ch73-63e15.2	93	98.886	Gambusia_affinis
ENSPMEG00000002129	si:ch73-63e15.2	90	86.884	ENSGACG00000013190	si:ch73-63e15.2	96	88.256	Gasterosteus_aculeatus
ENSPMEG00000002129	si:ch73-63e15.2	90	75.026	ENSGAGG00000008348	SBNO2	87	72.203	Gopherus_agassizii
ENSPMEG00000002129	si:ch73-63e15.2	96	82.718	ENSHBUG00000010742	si:ch73-63e15.2	100	76.321	Haplochromis_burtoni
ENSPMEG00000002129	si:ch73-63e15.2	90	69.360	ENSHGLG00000008739	SBNO2	85	68.534	Heterocephalus_glaber_female
ENSPMEG00000002129	si:ch73-63e15.2	90	69.570	ENSHGLG00100005269	SBNO2	99	68.663	Heterocephalus_glaber_male
ENSPMEG00000002129	si:ch73-63e15.2	96	84.226	ENSHCOG00000000884	si:ch73-63e15.2	96	81.634	Hippocampus_comes
ENSPMEG00000002129	si:ch73-63e15.2	96	76.627	ENSIPUG00000000537	si:ch73-63e15.2	87	79.241	Ictalurus_punctatus
ENSPMEG00000002129	si:ch73-63e15.2	97	79.225	ENSIPUG00000019672	sbno2	99	79.125	Ictalurus_punctatus
ENSPMEG00000002129	si:ch73-63e15.2	90	69.311	ENSSTOG00000025832	SBNO2	88	67.442	Ictidomys_tridecemlineatus
ENSPMEG00000002129	si:ch73-63e15.2	90	65.759	ENSJJAG00000017397	Sbno2	91	63.548	Jaculus_jaculus
ENSPMEG00000002129	si:ch73-63e15.2	96	84.683	ENSKMAG00000005541	si:ch73-63e15.2	100	78.679	Kryptolebias_marmoratus
ENSPMEG00000002129	si:ch73-63e15.2	96	86.794	ENSLBEG00000025016	si:ch73-63e15.2	99	88.466	Labrus_bergylta
ENSPMEG00000002129	si:ch73-63e15.2	60	79.818	ENSLBEG00000005937	-	100	81.818	Labrus_bergylta
ENSPMEG00000002129	si:ch73-63e15.2	62	67.625	ENSLACG00000012598	SBNO2	99	73.105	Latimeria_chalumnae
ENSPMEG00000002129	si:ch73-63e15.2	96	78.902	ENSLOCG00000004643	si:ch73-63e15.2	87	82.447	Lepisosteus_oculatus
ENSPMEG00000002129	si:ch73-63e15.2	89	68.936	ENSLAFG00000008824	SBNO2	89	65.517	Loxodonta_africana
ENSPMEG00000002129	si:ch73-63e15.2	88	69.519	ENSMFAG00000040030	SBNO2	90	66.496	Macaca_fascicularis
ENSPMEG00000002129	si:ch73-63e15.2	88	71.261	ENSMMUG00000010886	SBNO2	89	66.325	Macaca_mulatta
ENSPMEG00000002129	si:ch73-63e15.2	88	71.261	ENSMNEG00000039927	SBNO2	88	67.665	Macaca_nemestrina
ENSPMEG00000002129	si:ch73-63e15.2	88	71.261	ENSMLEG00000038556	SBNO2	97	65.565	Mandrillus_leucophaeus
ENSPMEG00000002129	si:ch73-63e15.2	96	84.323	ENSMAMG00000018758	si:ch73-63e15.2	100	75.972	Mastacembelus_armatus
ENSPMEG00000002129	si:ch73-63e15.2	96	82.621	ENSMZEG00005010682	si:ch73-63e15.2	100	75.871	Maylandia_zebra
ENSPMEG00000002129	si:ch73-63e15.2	92	71.211	ENSMGAG00000003801	SBNO2	90	71.660	Meleagris_gallopavo
ENSPMEG00000002129	si:ch73-63e15.2	90	70.242	ENSMAUG00000008034	Sbno2	88	66.943	Mesocricetus_auratus
ENSPMEG00000002129	si:ch73-63e15.2	90	70.304	ENSMICG00000013071	SBNO2	88	68.614	Microcebus_murinus
ENSPMEG00000002129	si:ch73-63e15.2	90	69.948	ENSMOCG00000010504	Sbno2	88	66.611	Microtus_ochrogaster
ENSPMEG00000002129	si:ch73-63e15.2	90	72.432	ENSMODG00000005382	SBNO2	89	67.036	Monodelphis_domestica
ENSPMEG00000002129	si:ch73-63e15.2	96	80.586	ENSMALG00000021831	si:ch73-63e15.2	99	82.049	Monopterus_albus
ENSPMEG00000002129	si:ch73-63e15.2	90	69.433	ENSMUSG00000035673	Sbno2	97	66.333	Mus_musculus
ENSPMEG00000002129	si:ch73-63e15.2	90	69.570	MGP_PahariEiJ_G0030976	Sbno2	88	66.583	Mus_pahari
ENSPMEG00000002129	si:ch73-63e15.2	90	69.570	MGP_SPRETEiJ_G0016381	Sbno2	94	66.417	Mus_spretus
ENSPMEG00000002129	si:ch73-63e15.2	90	71.069	ENSMPUG00000008747	SBNO2	95	69.171	Mustela_putorius_furo
ENSPMEG00000002129	si:ch73-63e15.2	90	70.273	ENSNGAG00000004308	Sbno2	86	67.938	Nannospalax_galili
ENSPMEG00000002129	si:ch73-63e15.2	90	86.752	ENSNBRG00000022968	si:ch73-63e15.2	99	89.145	Neolamprologus_brichardi
ENSPMEG00000002129	si:ch73-63e15.2	80	78.541	ENSNLEG00000001305	SBNO2	89	69.740	Nomascus_leucogenys
ENSPMEG00000002129	si:ch73-63e15.2	75	67.692	ENSMEUG00000013511	-	78	66.596	Notamacropus_eugenii
ENSPMEG00000002129	si:ch73-63e15.2	88	70.684	ENSOPRG00000017238	SBNO2	94	69.102	Ochotona_princeps
ENSPMEG00000002129	si:ch73-63e15.2	90	68.835	ENSODEG00000011822	SBNO2	89	65.705	Octodon_degus
ENSPMEG00000002129	si:ch73-63e15.2	96	82.600	ENSONIG00000002490	si:ch73-63e15.2	94	87.786	Oreochromis_niloticus
ENSPMEG00000002129	si:ch73-63e15.2	90	90.000	ENSORLG00000000913	si:ch73-63e15.2	100	76.383	Oryzias_latipes
ENSPMEG00000002129	si:ch73-63e15.2	96	84.369	ENSORLG00020010978	si:ch73-63e15.2	100	76.318	Oryzias_latipes_hni
ENSPMEG00000002129	si:ch73-63e15.2	90	90.000	ENSORLG00015000202	si:ch73-63e15.2	100	76.643	Oryzias_latipes_hsok
ENSPMEG00000002129	si:ch73-63e15.2	96	84.175	ENSOMEG00000000359	si:ch73-63e15.2	100	75.875	Oryzias_melastigma
ENSPMEG00000002129	si:ch73-63e15.2	90	69.602	ENSOARG00000011130	SBNO2	90	65.029	Ovis_aries
ENSPMEG00000002129	si:ch73-63e15.2	88	70.802	ENSPPAG00000032482	SBNO2	90	67.502	Pan_paniscus
ENSPMEG00000002129	si:ch73-63e15.2	88	70.909	ENSPTRG00000010185	SBNO2	87	68.641	Pan_troglodytes
ENSPMEG00000002129	si:ch73-63e15.2	88	66.987	ENSPANG00000009658	SBNO2	88	64.157	Papio_anubis
ENSPMEG00000002129	si:ch73-63e15.2	96	73.096	ENSPKIG00000009707	-	84	79.137	Paramormyrops_kingsleyae
ENSPMEG00000002129	si:ch73-63e15.2	92	84.266	ENSPKIG00000024201	si:ch73-63e15.2	85	83.276	Paramormyrops_kingsleyae
ENSPMEG00000002129	si:ch73-63e15.2	90	72.557	ENSPSIG00000002852	SBNO2	99	73.529	Pelodiscus_sinensis
ENSPMEG00000002129	si:ch73-63e15.2	96	84.577	ENSPMGG00000014375	si:ch73-63e15.2	96	80.047	Periophthalmus_magnuspinnatus
ENSPMEG00000002129	si:ch73-63e15.2	90	68.182	ENSPEMG00000024122	Sbno2	85	67.370	Peromyscus_maniculatus_bairdii
ENSPMEG00000002129	si:ch73-63e15.2	88	73.276	ENSPCIG00000011264	SBNO2	89	68.075	Phascolarctos_cinereus
ENSPMEG00000002129	si:ch73-63e15.2	100	99.494	ENSPFOG00000004096	si:ch73-63e15.2	100	99.494	Poecilia_formosa
ENSPMEG00000002129	si:ch73-63e15.2	100	98.997	ENSPLAG00000014653	si:ch73-63e15.2	100	99.015	Poecilia_latipinna
ENSPMEG00000002129	si:ch73-63e15.2	100	98.100	ENSPREG00000006755	si:ch73-63e15.2	100	98.100	Poecilia_reticulata
ENSPMEG00000002129	si:ch73-63e15.2	81	72.315	ENSPCAG00000012256	SBNO2	77	69.142	Procavia_capensis
ENSPMEG00000002129	si:ch73-63e15.2	90	63.351	ENSPCOG00000015216	SBNO2	88	62.351	Propithecus_coquereli
ENSPMEG00000002129	si:ch73-63e15.2	96	82.621	ENSPNYG00000019926	si:ch73-63e15.2	100	76.321	Pundamilia_nyererei
ENSPMEG00000002129	si:ch73-63e15.2	91	83.475	ENSPNAG00000020260	si:ch73-63e15.2	85	81.810	Pygocentrus_nattereri
ENSPMEG00000002129	si:ch73-63e15.2	96	76.953	ENSPNAG00000026609	sbno2a	99	69.894	Pygocentrus_nattereri
ENSPMEG00000002129	si:ch73-63e15.2	90	69.675	ENSRNOG00000013987	Sbno2	89	68.914	Rattus_norvegicus
ENSPMEG00000002129	si:ch73-63e15.2	90	69.263	ENSRBIG00000009740	SBNO2	86	68.000	Rhinopithecus_bieti
ENSPMEG00000002129	si:ch73-63e15.2	77	71.411	ENSRROG00000044671	SBNO2	85	71.043	Rhinopithecus_roxellana
ENSPMEG00000002129	si:ch73-63e15.2	90	69.665	ENSSBOG00000023562	SBNO2	89	67.237	Saimiri_boliviensis_boliviensis
ENSPMEG00000002129	si:ch73-63e15.2	91	72.083	ENSSHAG00000010241	SBNO2	98	70.470	Sarcophilus_harrisii
ENSPMEG00000002129	si:ch73-63e15.2	90	83.135	ENSSFOG00015005861	si:ch73-63e15.2	99	79.510	Scleropages_formosus
ENSPMEG00000002129	si:ch73-63e15.2	94	90.761	ENSSMAG00000012489	si:ch73-63e15.2	100	77.305	Scophthalmus_maximus
ENSPMEG00000002129	si:ch73-63e15.2	96	84.810	ENSSDUG00000003527	si:ch73-63e15.2	100	77.693	Seriola_dumerili
ENSPMEG00000002129	si:ch73-63e15.2	96	84.563	ENSSLDG00000004623	si:ch73-63e15.2	100	77.565	Seriola_lalandi_dorsalis
ENSPMEG00000002129	si:ch73-63e15.2	90	91.116	ENSSPAG00000017717	si:ch73-63e15.2	100	79.482	Stegastes_partitus
ENSPMEG00000002129	si:ch73-63e15.2	92	70.010	ENSSSCG00000030042	SBNO2	90	68.601	Sus_scrofa
ENSPMEG00000002129	si:ch73-63e15.2	91	88.098	ENSTRUG00000018193	si:ch73-63e15.2	86	88.655	Takifugu_rubripes
ENSPMEG00000002129	si:ch73-63e15.2	50	92.816	ENSTNIG00000000856	si:ch73-63e15.2	93	93.661	Tetraodon_nigroviridis
ENSPMEG00000002129	si:ch73-63e15.2	90	71.064	ENSUAMG00000006568	SBNO2	93	71.016	Ursus_americanus
ENSPMEG00000002129	si:ch73-63e15.2	90	71.204	ENSVVUG00000022823	SBNO2	89	66.347	Vulpes_vulpes
ENSPMEG00000002129	si:ch73-63e15.2	81	76.566	ENSXETG00000021579	sbno2	91	76.566	Xenopus_tropicalis
ENSPMEG00000002129	si:ch73-63e15.2	100	90.175	ENSXCOG00000009209	si:ch73-63e15.2	94	95.371	Xiphophorus_couchianus
ENSPMEG00000002129	si:ch73-63e15.2	100	96.388	ENSXMAG00000012091	si:ch73-63e15.2	100	96.388	Xiphophorus_maculatus